ccnj (ccnj,LOC107562385)


Basic Information

Item Value
gene id ccnj
gene name ccnj,LOC107562385
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11037969 ~ 11041301 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942945.2
GTGTGGCATGTTGCTGTTGCTTATAACTTAGATGTTTCATcgtaaacataaacataaacaccgCTTTCGGcgttgaattatttttttcctccatttcgATATGCGGGATAGTTTGCTATTTGGTAGTGTGTATCCATGTTTCATTGTGTAGGGCATCCTGACACTTTTCACCCAATGGAGCTGGAGGGCCAGTGGTGGAAAGGCCAACTGGCTGGAGATATTTACCATGCTCTGCGCTACAAGGAGCTGAGGTTGCCTGTTTACAAAGGTCAGTCCCCACAACTGAACCTTAGGCGCTACTTTGCAGACCTCATAGCCATAGTGAGCAACCGGTTCAGGCTGTGTCCTGCAGCTAGACACCTGGCTGTGTATCTGCTGGACCTCTTCATGGACCACTATGACATCTCTGTGCAGCAGCTCCACATGGTGGCTCTTTCGTGCCTACTTTTGGCTAGTAAatttgaagagagagaggacagagtaCCTAAGCTGGAAACCCTCAACAGCCTCACTTGTATGAGCTCCATGAACCTGGTGTTGACCAAACAGGGCCTATTGCACATGGAGCTGCTGCTCCTTGAGACCTTCCACTGGAACCTCTACTTACCCACAGCTGCCCACTTTATCGAGTATTACCTGTCAATTGCTGTCAGTGAAACAGATCTACATGATGGCTGGCCAATGGCTTGCTTAGAGAAGACAATGTTGTATATGAACAAGTATGCAGATTACTTTCTGGAAGTCTCTTTGCAAGACCATGCATTTCTGCGATTTGCGCCGTCATTAGTAGCTGCTGCCTGTGTGGCTTCATCTCGAGTAATCCTGCATTTGGCTCCGACCTGGCCGCCTCGTCTACAGCGCCTGTCCGCCTACGCCTGGGAGCAGTTACTGCCCTGCGTGGAGAGACTGCTTCTTGCTCATGATAGTGATGTAAAGGAAGCCAACAAGCAGAAGTGCCAGCTACAGCAGCCTGGTGCACAGCCAGGGCAGGCTGTGTTCCCAGCACAAAGCCAGAGTGCCACAGTAGCCCAGTACGTCCACAGACCGGCCTTGCAATATGGCCAGCAGAGCTGCCCACCTGTGCTGGTCTCGGCCCACGCCTCAAGTGCCTACCTGTGCCATAGTAGTTCACTGCAGGTGTCTAGTGGCCCGTCACATGGGCAAGCACAGCCACAGACTATCTCTCTACCTCTGGATGCTAAGATGAAGATGCCGAACAGGTCGTACCAGGTGAACTCCATTTACTCATGCACAGCACCGTGCTTCAACAGGTGATGGCAGCTGGACACCGGCTACAAACTGAGCGGTTAATTATATAAAAGACATTTACTTGAGTATAAAGCAATCTATGAAAATGATGGTAATGCCAACCTTCGCATCTCAAGCTGGATAATTCAAGCTCCTGAATcctgttttaataattaaaaaaaaaaaaaaaacactgaagtaaTGGACATTgtgttaaatactgtaataactGAACAACGAAGTGCAAAGTGAGCAAGATGTGCAATCCTGTGAGACTTATTTCATTCAAATTCCTTCCATGTGaagtgtttgttttcatttgtttgtggttttttttttttttttttttttttttgcactgagaacagtattttttatattcttgcTGCTTGAGAAGATGGTGTGATTTTTATCAGCACCAGCAAGCTTATGCCAGTGATAACCAGGTTA
>XM_034302583.1
TTGGCCGAAGTTGGCAAAGCATCCTGACACTTTTCACCCAATGGAGCTGGAGGGCCAGTGGTGGAAAGGCCAACTGGCTGGAGATATTTACCATGCTCTGCGCTACAAGGAGCTGAGGTTGCCTGTTTACAAAGGTCAGTCCCCACAACTGAACCTTAGGCGCTACTTTGCAGACCTCATAGCCATAGTGAGCAACCGGTTCAGGCTGTGTCCTGCAGCTAGACACCTGGCTGTGTATCTGCTGGACCTCTTCATGGACCACTATGACATCTCTGTGCAGCAGCTCCACATGGTGGCTCTTTCGTGCCTACTTTTGGCTAGTAAatttgaagagagagaggacagagtaCCTAAGCTGGAAACCCTCAACAGCCTCACTTGTATGAGCTCCATGAACCTGGTGTTGACCAAACAGGGCCTATTGCACATGGAGCTGCTGCTCCTTGAGACCTTCCACTGGAACCTCTACTTACCCACAGCTGCCCACTTTATCGAGTATTACCTGTCAATTGCTGTCAGTGAAACAGATCTACATGATGGCTGGCCAATGGCTTGCTTAGAGAAGACAATGTTGTATATGAACAAGTATGCAGATTACTTTCTGGAAGTCTCTTTGCAAGACCATGCATTTCTGCGATTTGCGCCGTCATTAGTAGCTGCTGCCTGTGTGGCTTCATCTCGAGTAATCCTGCATTTGGCTCCGACCTGGCCGCCTCGTCTACAGCGCCTGTCCGCCTACGCCTGGGAGCAGTTACTGCCCTGCGTGGAGAGACTGCTTCTTGCTCATGATAGTGATGTAAAGGAAGCCAACAAGCAGAAGTGCCAGCTACAGCAGCCTGGTGCACAGCCAGGGCAGGCTGTGTTCCCAGCACAAAGCCAGAGTGCCACAGTAGCCCAGTACGTCCACAGACCGGCCTTGCAATATGGCCAGCAGAGCTGCCCACCTGTGCTGGTCTCGGCCCACGCCTCAAGTGCCTACCTGTGCCATAGTAGTTCACTGCAGGTGTCTAGTGGCCCGTCACATGGGCAAGCACAGCCACAGACTATCTCTCTACCTCTGGATGCTAAGATGAAGATGCCGAACAGGTCGTACCAGGTGAACTCCATTTACTCATGCACAGCACCGTGCTTCAACAGGTGATGGCAGCTGGACACCGGCTACAAACTGAGCGGTTAATTATATAAAAGACATTTACTTGAGTATAAAGCAATCTATGAAAATGATGGTAATGCCAACCTTCGCATCTCAAGCTGGATAATTCAAGCTCCTGAATcctgttttaataattaaaaaaaaaaaaaaaacactgaagtaaTGGACATTgtgttaaatactgtaataactGAACAACGAAGTGCAAAGTGAGCAAGATGTGCAATCCTGTGAGACTTATTTCATTCAAATTCCTTCCATGTGaagtgtttgttttcatttgtttgtggttttttttttttttttttttttttttgcactgagaacagtattttttatattcttgcTGCTTGAGAAGATGGTGTGATTTTTATCAGCACCAGCAAGCTTATGCCAGTGATAACCAGGTTA
>XM_034302584.1
GTGAGGGGTTCATGTCGCCTTCCCTGCCCTAGTACACCAGATTCTATCCCCTTCCTACCACAGCTCAGGTTTCAGGTTAGCATGTGGTCGTAGAGCTTGTGAACATGTTCACATGGAAGAGTTCAGCAGAGTAATCAAGGGCCTCTACTAGAGCTCCAGCACACTGtcgacatgttttttttttttttcatttcctatACAGTAAATATGAGTTGGTAATAAACCTAAGCGAAATATGCAGGATATTAACTTTTGTATAAGGTATTATTACATACAGCACGCAGGCTTTGCTAACATTTCATCAAGCCTCGACTGGATTACAAGTCTGGCTCCTCGGTTGCTGACTCCGTGACGTCAGTGCAAGCCTGCTCCTGATTGGTTGAGCACTGAAGTTTGGCGATTCATCCTGACACTTTTCACCCAATGGAGCTGGAGGGCCAGTGGTGGAAAGGCCAACTGGCTGGAGATATTTACCATGCTCTGCGCTACAAGGAGCTGAGGTTGCCTGTTTACAAAGGTCAGTCCCCACAACTGAACCTTAGGCGCTACTTTGCAGACCTCATAGCCATAGTGAGCAACCGGTTCAGGCTGTGTCCTGCAGCTAGACACCTGGCTGTGTATCTGCTGGACCTCTTCATGGACCACTATGACATCTCTGTGCAGCAGCTCCACATGGTGGCTCTTTCGTGCCTACTTTTGGCTAGTAAatttgaagagagagaggacagagtaCCTAAGCTGGAAACCCTCAACAGCCTCACTTGTATGAGCTCCATGAACCTGGTGTTGACCAAACAGGGCCTATTGCACATGGAGCTGCTGCTCCTTGAGACCTTCCACTGGAACCTCTACTTACCCACAGCTGCCCACTTTATCGAGTATTACCTGTCAATTGCTGTCAGTGAAACAGATCTACATGATGGCTGGCCAATGGCTTGCTTAGAGAAGACAATGTTGTATATGAACAAGTATGCAGATTACTTTCTGGAAGTCTCTTTGCAAGACCATGCATTTCTGCGATTTGCGCCGTCATTAGTAGCTGCTGCCTGTGTGGCTTCATCTCGAGTAATCCTGCATTTGGCTCCGACCTGGCCGCCTCGTCTACAGCGCCTGTCCGCCTACGCCTGGGAGCAGTTACTGCCCTGCGTGGAGAGACTGCTTCTTGCTCATGATAGTGATGTAAAGGAAGCCAACAAGCAGAAGTGCCAGCTACAGCAGCCTGGTGCACAGCCAGGGCAGGCTGTGTTCCCAGCACAAAGCCAGAGTGCCACAGTAGCCCAGTACGTCCACAGACCGGCCTTGCAATATGGCCAGCAGAGCTGCCCACCTGTGCTGGTCTCGGCCCACGCCTCAAGTGCCTACCTGTGCCATAGTAGTTCACTGCAGGTGTCTAGTGGCCCGTCACATGGGCAAGCACAGCCACAGACTATCTCTCTACCTCTGGATGCTAAGATGAAGATGCCGAACAGGTCGTACCAGGTGAACTCCATTTACTCATGCACAGCACCGTGCTTCAACAGGTGATGGCAGCTGGACACCGGCTACAAACTGAGCGGTTAATTATATAAAAGACATTTACTTGAGTATAAAGCAATCTATGAAAATGATGGTAATGCCAACCTTCGCATCTCAAGCTGGATAATTCAAGCTCCTGAATcctgttttaataattaaaaaaaaaaaaaaaacactgaagtaaTGGACATTgtgttaaatactgtaataactGAACAACGAAGTGCAAAGTGAGCAAGATGTGCAATCCTGTGAGACTTATTTCATTCAAATTCCTTCCATGTGaagtgtttgttttcatttgtttgtggttttttttttttttttttttttttttgcactgagaacagtattttttatattcttgcTGCTTGAGAAGATGGTGTGATTTTTATCAGCACCAGCAAGCTTATGCCAGTGATAACCAGGTTA

Function

symbol description
ccnj Is expressed in rhombomere 4. Orthologous to human CCNJ (cyclin J).

NR:

description
PREDICTED: cyclin-J

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942945.2 False 1698 mRNA 0.46 6 11037969 11040858
XM_034302583.1 False 1564 mRNA 0.47 6 11037969 11040883
XM_034302584.1 True 1947 mRNA 0.47 6 11037969 11041301

Neighbor

gene id symbol gene type direction distance location
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276 coding downstream 27603 10982594 ~ 11010366 (-)
march5 march5,LOC107719203 coding downstream 110741 10894351 ~ 10927228 (-)
dennd10 fam45a,LOC106576813,LOC106604714,LOC107711433 coding downstream 175859 10856138 ~ 10862110 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding downstream 188256 10845031 ~ 10849713 (-)
polr1b polr1b coding downstream 240874 10785741 ~ 10797095 (-)
blnk LOC108263522 coding upstream 13467 11054768 ~ 11094954 (-)
vent NA coding upstream 281419 11322720 ~ 11324343 (-)
vox ventx coding upstream 286328 11327629 ~ 11328847 (-)
LOC113544651 kndc1,LOC104962727,LOC107573641,LOC107373061 coding upstream 289663 11330964 ~ 11372987 (-)
LOC113544831 adgra1 coding upstream 348574 11389875 ~ 11566240 (-)
G44275 NA non-coding downstream 57674 10978646 ~ 10980295 (-)
G44274 NA non-coding downstream 59546 10974819 ~ 10978423 (-)
G44271 NA non-coding downstream 81477 10953505 ~ 10956492 (-)
G44262 NA non-coding downstream 112711 10922309 ~ 10925258 (-)
G44173 NA non-coding downstream 220677 10816672 ~ 10817292 (-)
G44582 NA non-coding upstream 345905 11387206 ~ 11387946 (-)
G44818 NA non-coding upstream 798151 11839452 ~ 11839822 (-)
G44820 NA non-coding upstream 870909 11912210 ~ 11914029 (-)
G44848 NA non-coding upstream 966525 12007826 ~ 12008029 (-)
LOC117596852 NA non-coding upstream 1200308 12241609 ~ 12242121 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 876446 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 1029408 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1809085 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 2184175 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 2254171 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 667313 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 969630 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1103539 12144840 ~ 12152522 (-)
nin nin other upstream 1393808 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1483335 12524636 ~ 12534215 (-)

Expression


Co-expression Network