LOC113544337 (LOC108263461)


Basic Information

Item Value
gene id LOC113544337
gene name LOC108263461
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15813565 ~ 15821008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943105.2
TCTGTTCTTTGTCAGACTGACCGAGTAAACCTGCCAGAGTACTCTTGCTGCTCCAGTCCAGAAAGATGAAGCCATCcgtttatttgatattttgctTCCTTTTTCTTATTGGAATTAGGGACAATGTGATAGTTGTGCTGAGTACAGACCTCCACTTCGATTCGGGGGttcagtatgagtatgagtacagCACGTCTATGGCGGTGGCTCCCATCTCTGTGGATTTTGGAGAAGTTACTGCATTCACTATGCTAGCAGTCATACACATCCATTCACTATGGAGGAACAGCCAGCAAGAGCAGCTTCTGCACTTACAAATTCGAGATCTAAAACTTATTCCCAATTCAAGTGACTCCACCAGCACACCCTTGGTCCTTGGTGACATGGCGAGTGGCTCTGAACATTTTAAGGAACCATTTCTTGTGCATGTCCACTCAGGAAAGATTAAAGGAGTTTTTGATGTTTCTTCGGACAACACGGTCAGCTTGAATTTCAAAAAAGGATTGGTGTCGCTGCTCCAAATTCAAGCTCAATCTGGAATCATTATGGAAGATGACACAACAGGACAGTGCCAGGTCTCACACCACACGTCAGgggatgacatcatcaaagtCAAACATCATGAAAACTGTGAAAAGATAATGCCTGATGGTATGATGTTCGCTAACCagCTCTTTAGGGTGAGTTCAGGTGGGAGTTCTGAAACAGTTTTCACCATGGATGGTAGCCACATAAAATCAGTAATTTCTGAGGAATTACGCTCACTGGTTTTAGATGAACATCCTACTGTCGGAATCCACATTTCTTCAAGGCAGTTTTTGCAGCTCTTATCAACACACTCTGGTCCTAATGAGGCACAGGGAGCACTGCAGGGCGTGCTCAGTTCTCTCAAGGCAGGCTATGTGAATCATACTATTCATGCAATACCTGCTGTCAGACAGCCTGCCACAAACAGATATTCAGTTCCTAAAATCCTACATCGTCTGAAAGCAAAAGGGTTGCACACTCAGTCAGCGACAGTGAACATGTTTCTCCAGCTGTCAGAATCCCTGCGAAATCTGGAAATggctgaaattaaaaatatttttaaaaaatctcatgCCAAATTTGTTCCTATTCTGATAGATGCGGCTGCAGCAGCCTCTACACCTGCTTCACTGGAGGCTCTTGTCTCTTTTATCAACATCACAAATCCAAAGACATCACCACTGCTGCAGAAATTCCTCTATGCCTGCGCATTCTCTTCTCAGCCATCCACTCATTTAATTAATATCATCACTCGCATCcttacacacacatctgcacgGTGGGAGACGCATGAAATGGCTCTCATTGTTCTTGGGACAGTAATAAGGAAAATGTGTTCTGCAGATATGTGCCACCTTCAgGAAGTTGAACATGCTAAGAGACTTATTGTGAAAGGGCTGAGTGCATccactgaagagagagagataaagtcaTACCTGCTAGCCCTAAAAAGTGCTCGTCTTCCAGAGACAGTGCCTGTCCTTCTCCAGTATATTGACCACTCCAAATCTCTGTCAAGCATTGTACTCTCAGCACTGCAGGCCTTTCCATCTCAATATATCACAAAAGagGTTAAGGAGCATGCCAGAGACATTTTTACCCAAAGAAAGAAGCCTTTTCCTGCTCCTGTACGTCTGGATGCTGCCCAGCTCTTGCTTATGTATGATCCTCTGGACATAGATGTCCGAGAGATAATCCTGAAAATTGCAGAGGAAAAGCCTGAGGTCTCCAAGTTTCTTACGACCAAAATTATGAGCATGCTACAGTCAGATTCTCCTGCCAGAAATGTCATTCGTACCGTGTTGAAAGATCCAAAGCTGAATAATTATTTCCATCTTGCACGACTTGGTTGTTCCTCATCATACGCTGGACTGATGACAGAGAACAAAAACATGGTTGCATCATATGACTTCGAATTTCTCTTCTCCGAGGCTGGAGCTCTAAAGCAAAGCAACAGCCATTTCTATACCCAAACCAGAGGGAGAAGTTTGCCTTTACTGCAGGTTTCTCTAGAAACGAGTGGTCTTGATTCTCTATTTGGGACCGAAGCAACTAAGGGAGCAGAAGAGGAAGAGCTAATGGCAGGCATGTCATCCATGTTTCTGGGCGTGCAAATCCAGCCCATTGTCTTCTTCCAGGGCTATTCAGACTTGATGATCAAGTACTTCTCAGCAGGTGAAGGACCAGTGAACATTATCTCTGGAAATATTCTTGTTCTCGATCACAGACAGAGTCTCATTCTCCAGTCTGGACTACAAGCTCAGGGGGTTTTTCATGGAGGTCTTTCAGTTGACGTAGCAGCTGATTTGGCATTCAGCTTATTCACTCAGGAGTCAAAAACCTCTGTCGATAACAAGTTCTCACTAGTTGTCAGTGCCAGGGCAGAAGTAGACGCTCCACTCATGAGCACTACGGCTGAGACCGTGGTGAAGATGGATCCTTCTGTCAGATTTGTCACCACTGTTAGCTTCTATGACACGCCTGTACAATACTGTCTGCAGCTTATCAGAGAGCCTCTGCTTTACAGagagagagtgtctacCCAAGTAGACAttcaaaacagaagaaaacttGGTCAGCAAAGCAAACGAAAATGGACTCTCTCAGGAGAAGAGACAGCACTCCACAGGGACAATTCAAAGATGTGTAGAAGTCTACTTAACCCAAACtccaaataacaataaaaaaagactcGAGTCTTCATGATCATCTGCTCAGAAAGAGCACTGAGTTGTTCATTCGTTGACTAGGACAGGTGGAAAAACATTGTGCCTGTATATGACTACACAAGTTTGTGCTTCAGAGACTAAAGGGACATCCTAAGCAGAGTGCTATAACAAATGACACCCTGTACAATTCAgacaagcaagaaaaacaaatcaataaactaCTTTTCAATGTTTGCTGTATTATGCTGTAACTCTCATAGGTGGAACATACTTATGTAATTGTTTATTATGGATAAGTATAATT
>XM_034302828.1
GATCAATTCATTACAGACTGACCGAGTAAACCTGCCAGAGTACTCTTGCTGCTCCAGTCCAGAAAGATGAAGCCATCcgtttatttgatattttgctTCCTTTTTCTTATTGGAATTAGGGACAATGTGATAGTTGTGCTGAGTACAGACCTCCACTTCGATTCGGGGGttcagtatgagtatgagtacagCACGTCTATGGCGGTGGCTCCCATCTCTGTGGATTTTGGAGAAGTTACTGCATTCACTATGCTAGCAGTCATACACATCCATTCACTATGGAGGAACAGCCAGCAAGAGCAGCTTCTGCACTTACAAATTCGAGATCTAAAACTTATTCCCAATTCAAGTGACTCCACCAGCACACCCTTGGTCCTTGGTGACATGGCGAGTGGCTCTGAACATTTTAAGGAACCATTTCTTGTGCATGTCCACTCAGGAAAGATTAAAGGAGTTTTTGATGTTTCTTCGGACAACACGGTCAGCTTGAATTTCAAAAAAGGATTGGTGTCGCTGCTCCAAATTCAAGCTCAATCTGGAATCATTATGGAAGATGACACAACAGGACAGTGCCAGGTCTCACACCACACGTCAGgggatgacatcatcaaagtCAAACATCATGAAAACTGTGAAAAGATAATGCCTGATGGTATGATGTTCGCTAACCagCTCTTTAGGGTGAGTTCAGGTGGGAGTTCTGAAACAGTTTTCACCATGGATGGTAGCCACATAAAATCAGTAATTTCTGAGGAATTACGCTCACTGGTTTTAGATGAACATCCTACTGTCGGAATCCACATTTCTTCAAGGCAGTTTTTGCAGCTCTTATCAACACACTCTGGTCCTAATGAGGCACAGGGAGCACTGCAGGGCGTGCTCAGTTCTCTCAAGGCAGGCTATGTGAATCATACTATTCATGCAATACCTGCTGTCAGACAGCCTGCCACAAACAGATATTCAGTTCCTAAAATCCTACATCGTCTGAAAGCAAAAGGGTTGCACACTCAGTCAGCGACAGTGAACATGTTTCTCCAGCTGTCAGAATCCCTGCGAAATCTGGAAATggctgaaattaaaaatatttttaaaaaatctcatgCCAAATTTGTTCCTATTCTGATAGATGCGGCTGCAGCAGCCTCTACACCTGCTTCACTGGAGGCTCTTGTCTCTTTTATCAACATCACAAATCCAAAGACATCACCACTGCTGCAGAAATTCCTCTATGCCTGCGCATTCTCTTCTCAGCCATCCACTCATTTAATTAATATCATCACTCGCATCcttacacacacatctgcacgGTGGGAGACGCATGAAATGGCTCTCATTGTTCTTGGGACAGTAATAAGGAAAATGTGTTCTGCAGATATGTGCCACCTTCAgGAAGTTGAACATGCTAAGAGACTTATTGTGAAAGGGCTGAGTGCATccactgaagagagagagataaagtcaTACCTGCTAGCCCTAAAAAGTGCTCGTCTTCCAGAGACAGTGCCTGTCCTTCTCCAGTATATTGACCACTCCAAATCTCTGTCAAGCATTGTACTCTCAGCACTGCAGGCCTTTCCATCTCAATATATCACAAAAGagGTTAAGGAGCATGCCAGAGACATTTTTACCCAAAGAAAGAAGCCTTTTCCTGCTCCTGTACGTCTGGATGCTGCCCAGCTCTTGCTTATGTATGATCCTCTGGACATAGATGTCCGAGAGATAATCCTGAAAATTGCAGAGGAAAAGCCTGAGGTCTCCAAGTTTCTTACGACCAAAATTATGAGCATGCTACAGTCAGATTCTCCTGCCAGAAATGTCATTCGTACCGTGTTGAAAGATCCAAAGCTGAATAATTATTTCCATCTTGCACGACTTGGTTGTTCCTCATCATACGCTGGACTGATGACAGAGAACAAAAACATGGTTGCATCATATGACTTCGAATTTCTCTTCTCCGAGGCTGGAGCTCTAAAGCAAAGCAACAGCCATTTCTATACCCAAACCAGAGGGAGAAGTTTGCCTTTACTGCAGGTTTCTCTAGAAACGAGTGGTCTTGATTCTCTATTTGGGACCGAAGCAACTAAGGGAGCAGAAGAGGAAGAGCTAATGGCAGGCATGTCATCCATGTTTCTGGGCGTGCAAATCCAGCCCATTGTCTTCTTCCAGGGCTATTCAGACTTGATGATCAAGTACTTCTCAGCAGGTGAAGGACCAGTGAACATTATCTCTGGAAATATTCTTGTTCTCGATCACAGACAGAGTCTCATTCTCCAGTCTGGACTACAAGCTCAGGGGGTTTTTCATGGAGGTCTTTCAGTTGACGTAGCAGCTGATTTGGCATTCAGCTTATTCACTCAGGAGTCAAAAACCTCTGTCGATAACAAGTTCTCACTAGTTGTCAGTGCCAGGGCAGAAGTAGACGCTCCACTCATGAGCACTACGGCTGAGACCGTGGTGAAGATGGATCCTTCTGTCAGATTTGTCACCACTGTTAGCTTCTATGACACGCCTGTACAATACTGTCTGCAGCTTATCAGAGAGCCTCTGCTTTACAGagagagagtgtctacCCAAGTAGACAttcaaaacagaagaaaacttGGTCAGCAAAGCAAACGAAAATGGACTCTCTCAGGAGAAGAGACAGCACTCCACAGGGACAATTCAAAGATGTGTAGAAGTCTACTTAACCCAAACtccaaataacaataaaaaaagactcGAGTCTTCATGATCATCTGCTCAGAAAGAGCACTGAGTTGTTCATTCGTTGACTAGGACAGGTGGAAAAACATTGTGCCTGTATATGACTACACAAGTTTGTGCTTCAGAGACTAAAGGGACATCCTAAGCAGAGTGCTATAACAAATGACACCCTGTACAATTCAgacaagcaagaaaaacaaatcaataaactaCTTTTCAATGTTTGCTGTATTATGCTGTAACTCTCATAGGTGGAACATACTTATGTAATTGTTTATTATGGATAAGTATAATT

Function

NR:

description
PREDICTED: microsomal triglyceride transfer protein large subunit-like isoform X2

GO:

id name namespace
GO:0015908 fatty acid transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943105.2 False 3000 mRNA 0.43 18 15813565 15820885
XM_034302828.1 True 3001 mRNA 0.43 19 15813565 15821008

Neighbor

gene id symbol gene type direction distance location
ppa1b ppa1,ppa1b,LOC107668792,LOC107708308,LOC107588733 coding downstream 23459 15782599 ~ 15790106 (-)
sar1ab sar1a,sar1ab,LOC104930554,LOC103355135,LOC105021427,LOC107588735,LOC107668793,LOC107708324 coding downstream 31401 15778870 ~ 15782164 (-)
tysnd1 tysnd1 coding downstream 35903 15774144 ~ 15777662 (-)
LOC113544455 LOC108263660 coding downstream 80812 15731459 ~ 15732753 (-)
trmt2b trmt2b coding downstream 90687 15721281 ~ 15722878 (-)
zcchc24 zcchc24,LOC107564348 coding upstream 171206 15992214 ~ 16025302 (-)
wu:fj13e08 LOC108262408 coding upstream 206128 16027136 ~ 16032780 (-)
si:dkey-275b16.2 paox coding upstream 212242 16033250 ~ 16042031 (-)
rassf4a rassf4 coding upstream 224327 16045335 ~ 16076953 (-)
tmem72 tmem72 coding upstream 258942 16079950 ~ 16162197 (-)
G47160 NA non-coding downstream 66791 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 79486 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 116151 15697078 ~ 15697414 (-)
LOC117596835 NA non-coding downstream 140107 15619605 ~ 15673458 (-)
G47114 LOC101463634 non-coding downstream 214359 15596729 ~ 15599206 (-)
G47213 NA non-coding upstream 190562 16011570 ~ 16013344 (-)
G47359 NA non-coding upstream 450262 16271270 ~ 16272531 (-)
G47599 NA non-coding upstream 855042 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 944701 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 967511 16788519 ~ 16788729 (-)
c3h10orf53 NA other downstream 397082 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 1028812 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1621322 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2378079 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2782369 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 623688 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1158123 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1650179 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1740396 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1757170 17578178 ~ 17661419 (-)

Expression


Co-expression Network