pou4f2 (pou4f2)


Basic Information

Item Value
gene id pou4f2
gene name pou4f2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5078360 ~ 5081554 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943133.2
agttgtgatgatgatgatgatgatgtctgtGAACAGCAGTAGCAAGCAGGCGTTCGTCATGCCTCACACCTCTTTACCCGAGCCCAAGTACTCGTCCTTGCATTCTTCTTCTCCTACGacttcttcttcgtcttcttcaGCCTCATCCACCTCGTCCTCCACTTTGACTTCCGACTCGCAGTCGTCGTCCTGCTCGTCCTCTCGCCACAGCAGCATCAGCACGAGCATCATCAGCACCTGCATCAGCAGCAGCGCGAGCTCGGAGGCAATGCGCCGTGCGGGTCTCCCGACCCCACCGAGCAACATATTCGGCGGCTTGGATGAGAGTCTGCTGGCCCGCGCCGAAGCTCTGGCGGCGGTGGACATCGTCTCACAGACCAAAAGtcaccaccagcaccagcagcaCCACCATCACCCTCACCACCCTCCGCATCCTCACCAGTCTCACCCTCCACCTCACCACAGCCCCTTTAAGCCGGACGCGACATACCACGCCATGAACGCGTTGCCGTGCACCTCCTCGACGTCCTCGTCCTCGTCGTCCTCTTCGTCCGTGCCAATCTCTCACCCGTCTGCGCTGGGCGGCGGCGGGAACGgaggccaccaccatcatcatcatcaccaccaccaccatcaccccCAGCCTCACCAAGCGCTGGAAGGGGAGCTCCTCGAGCACCTCAGCCCGGGCCTGGCGCTCGCAGGTGCAGCCATGGACGGCTCGGTGGTGTCCACGCCGGCGGCCCACATGGCCGGCGTGAACCACCCCATGCACCAGGCAGCCATCAACatggcggcggcggcggcggcgcaCGCTCACGCCCACGCGCACGCCCACGCCCACGCGCACGCCCACGCACTCCCGTCGGCGCACCACCTGGGCTGCCCGAGCGACGTGGACGCCGATCCGCGGGACCTGGAAGCGTTCGCCGAGCGCTTCAAGCAGCGGCGCATCAAGCTCGGCGTCACGCAGGCGGACGTGGGCGCGGCGCTCGCCAACCTCAAGATCCCAGGCGTGGGCTCGCTCAGCCAGAGCACGATCTGCCGCTTCGAGTCGCTCACACTCTCGCACAACAACATGATCGCGCTCAAGCCCATTCTCCAGGCGTGGCTGGACGAGGCCGAGAAGTCGCACCGCGAGAAACTCAGCAAGCCCGAGCTCTTCAACGGCGCCGAGAAGAAGCGGAAGCGCACGTCCATCGCGGCGCCCGAGAAGCGCTCCCTCGAGGCCTACTTCGCCATCCAGCCGCGACCCTCGTCCGAAAAAATCGCCGCCATTGCCGAAAAGCTGGACCTCAAAAAGAACGTAGTGCGCGTCTGGTTCTGCAACCAGAGGCAGAAACAAAAACGCATGAAATACTCAGCGTgcgtgtaaaaaaataataaagtttcaCTCTTTTAAAAGACTTCACGAACTGTTTGTATAACATTTCTTATcctcacatcttttttttttattttcccctgAATCATCCATGACTCGTGCACTGAAGCAGACTGTCACTCTGACTGAAAACACCAAAATCACTGTCACGTCAAAAGAGGATGTGGAGGCATTTTTAAAGGACCGGACCAAGTAAGACCttgtttttccccttttgaTATTTAACATGGTCAGGATTTCAGATGAGTGTGACTCTCTAAAGCCTCAATCAAATTGGTTTCTGGGCAATTTTCCGTGTAGAAGAGCTAAGGATGGACGGTAAATATATGAAAtagtaatgaatgaaaaagtCGCGTCAAAAAAAGAGGACAAATTAtccataaataaaactttttatattaattatatgagGAATAATATTAGACTAAGGATGAAGGCGAAATTGAAGAGGTTGAAATTGTTTTGATTGTTGTATTCTTTTCTGGATCAACTTGTCAACATGCCATGAAAATCAACCCCACCTgacagcttattattattattattattattattattattattattattacatggtGATCAAATGCAATACAATTTCTAGTGGATGGTTGATTTAGCTGATTGAGTTAAATCAagatttctctttatttattttaattccacCTCTTCGATTTCAATACTCATCACAGTCCTAATCAAAGAATAAATAGTTTTGTATTTCTCGCTAAATATTTAGTgcgtaaaaaattaaaaaattaaaaaaaatattaaaaaaaaatcgaatAACCTGAACTTTTAGGCTAAATAAATGTTGCTAAGGCTATGgatactgaaggaaaaaaaaaaaggttaaactGTGTGCCAACCATGTGGATTTGTTTGAACCAAATCTCAGCTGCAATACGCCTGCGCTCTAGTTTCTTATGAACTATTTATCATGTGAGGTAATGTTTACTTCATTACATATTTATTGGGATTCCctcctcgtttttttttttttttttttcttgagaaaATCATATTCTGAGTACAGAACAGCGTGGTCTCTACAACAAGCAGGGGGGAGGGGGGatgcttaaaataataataagccggctttatttattatgattattatgattattatttttcatttttttccctgataTCAACACAATTGACAGAGATATGATTCCCCTATTTGAATGACCTTTATGTTGTATGTTCTTTGGTaatttatttgtacaaaatGGACGCGTATCATGATGAATTCATGGCTTGTTACATTCACCGTGTTtggtaaatgttttctttatggaaaaaaaaaaaaaaaaaagatccgtTTCATGGAAAGTATACgtgtataatgtaaataaatcattgGGTCGATCGAACACATGAGATATTATCCGTATTTGCTGTATTGCTGTTTTAGCTGCGGTCAAACTTCTCTCTGTAATGTCTGTTGCTTTAGGTTTACTT

Function

symbol description
pou4f2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and heart development. Predicted to be located in nucleus. Is expressed in eye and rhombomere. Orthologous to human POU4F2 (POU class 4 homeobox 2).

NR:

description
PREDICTED: POU domain, class 4, transcription factor 2

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943133.2 True 2845 mRNA 0.47 2 5078360 5081554

Neighbor

gene id symbol gene type direction distance location
ednraa ednra coding downstream 133765 4921788 ~ 4944595 (-)
arhgap10 arhgap10,LOC107742542 coding downstream 199551 4785773 ~ 4878809 (-)
fam193a fam193a,LOC103156485 coding downstream 537737 4511701 ~ 4540623 (-)
sparcl1 LOC108262882 coding downstream 605062 4463696 ~ 4473298 (-)
LOC113542300 NA coding downstream 782231 4293496 ~ 4296129 (-)
zgc:152968 LOC108262836 coding upstream 275987 5357541 ~ 5384816 (-)
mmaa mmaa,LOC102789515 coding upstream 309602 5391156 ~ 5401649 (-)
smad1 smad1,LOC103023608,LOC107734580 coding upstream 321940 5403494 ~ 5433155 (-)
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding upstream 363809 5445363 ~ 5457180 (-)
LOC113541269 NA coding upstream 389403 5470957 ~ 5484612 (-)
G40992 NA non-coding downstream 266935 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 303707 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 309140 4765079 ~ 4769220 (-)
G40966 NA non-coding downstream 334286 4743727 ~ 4744074 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding downstream 338649 4739384 ~ 4739711 (-)
LOC117596884 NA non-coding upstream 179637 5261191 ~ 5264789 (-)
G41114 NA non-coding upstream 196397 5277951 ~ 5281223 (-)
G41174 NA non-coding upstream 518430 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 794547 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 1213678 6295232 ~ 6302088 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 172121 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 468910 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 2043807 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 2044423 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 2045557 3032732 ~ 3032803 (-)
lsm6 lsm6 other upstream 122152 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 674463 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2079920 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 2357350 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 3053087 8134641 ~ 8216551 (-)

Expression


Co-expression Network