prph2b (LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000)


Basic Information

Item Value
gene id prph2b
gene name LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22244109 ~ 22265419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943156.2
TTTCTGAGATATTTCTATGGAGAGGGAGAAAACGGGGATCGCGGTAAAatcagagaggaagagagactcATTATCCATCCTGCCACATGAAAGCACACTGTTCTCTTTTGCCCTGTGCAGCGGATTTGGACCACCTATCTACATCATGCTGTATGTACATGATGGAGGATGCAATAGGCTAAGGTTCCTCAGAGTAACTCTCCTCCCACTGCGCTGTTTAGCAGGAGAAACTAAAGCAACTAACCAATTACACAGAAAGATGAGGGATTACAACCCAAGGTTCATCTCCTGAAAATGAGATCAAGGCTGATTAGAAGGGTTTAGCATGACGTAGAGCAACACACTGCTTCAATCACTTGATGCCTCAACTGGTCACCTCTTTTTTTCAGGAAGAGGAACTGTTACATTTTGGtcaattttatgcaaaatttGGTCCTTGGTAGAGATCTCTACTTGCTGACACTATGGATCTCCATGAGTTCTGGGTGGTCagaatgaagatgaagaggGGAATTATTGGCATGGCATCTGTGGTAGCACCATTCTGGaatagaaaacaaaactaaGCTGGTGAAGTgcaatttttttgaaaacatttttgataGTGAGAACACGTAATCTTCCACTAAAGACTGAATATTTGACAGATaacaaatcaagaaaaaaacatatggCTTTGATGGTTATAAAATTTGACTTGGCCAAGCGAATCAAACTGGCCCAGGGACTGTGGCTCCTGTACTGGCTCGCGGTTATGGGTGGGATCCTCATCTTCAGCATGGGGCTTTTCTTCAAGATTGAACTTCGCAAAAGGAGTGAGATGATGGACAATAATGAGAGTCATTTTGTACCCAACCTGCTCATCCTGGTAGGCCTTGCTGCCTGCGGCATCAATGTTTTCGGTGGCAAAGTGTGCCATGACTCACTTGATTCAGCCAAGTTTTCCAAGTGGAAGCCCATGGTGAAGAATTACCTGTGCGGATGCTTTGCCTTCTCcatcatcctcttcatcatAGCTCTGCTTTGCTTCCTGATGCAGATCTCTCTACATTTTGCCCTGGCTGAAGGTCTAAAAAATGGGATGAAATATTACAAAGACACAGACACCCCAGGACGGTGCTTCATGAAGAGGACGCTGGACATGACCCAGATTGAGTTCCGTTGCTGTGGCAACAACAACTTTAGGGACTGGTTTGAGATCCAGTGGGTTAGCAACCGCTACCTGGACTTCAGCAATGATGAGGTCAAAGATCGTATCACAAGCAACGTAGAAGGTAAATACCTTATGGACAGCGTTCCCTTTAGCTGTTGCAACCCTGGTTCTCCACGGCCCTGCATCCAGCACCATCTGACCAATAACTCAGCTCACTATGACTACGACCATCACACCGAAGAACTAAACATCTGGACTCGAGGCTGCCGTGAAGCCCTGGTCTCCTACTATGGGGGGATGATGAACAGCATTGGGGCTTTTGTGCTGCTAGTCATGGTCTTGCAGGCTGCAGATATGGTGGGACTGAAATACCTGACAACCTCTTTGGAGACCCTGACAAACCCAGAGAACCCCGAGAGTGAGAGTGAAGGTTGGCTGCTGGAAAAGAGTGTGAAAGAGACTGTATCTGAGGTCCTGCAGAAGATAACATCACTTGGCAAAAAGAACCAGGTGGAGGGGgctgaggctgctgccagtgcCAGCTgagcagctcacacacacacaaacacacacctgggaCTGAAACCATCCTATAAGCAGAATCAAAGATTCTACAAACAAATTCCTACAAACATTGACACGCATTCACTTAAGCACTCGTAAATATATTGTACTGATGGGTTGTACAACCAGAAGTGAACAAAAGTAACAGATCCTTAATGAACCTTTAAATGCATTGAGCACTaactgaaaaaatgtaaatgtgaatgttcATATTgacatgtaaatataaatttaaataacataaaatggagtttaattttaaaaagatgtatatttgttgtggggaaaaaatgaaggtCAGAGAATATTTAGGATAATATTTATGTTGTCTCTTGCCCCCAGACAATCAGGGTTCAGGAAGGGCCAAAAACATAGTGGTGATGACCCTCACATGACCTTGTCCAAATCCAAAGGGCTAACACCATTAAGGCACATATCCTTTTGACcttttattgcattattataatataataatttttttggggggggggccTTTCAACAGCTAGTGAAGTAAATATGGCCTCTGACTGGTGTCCAGGTTTTTCTCAAACACTGCTGTTTGAGTAAATGTGCAACACTAGCACAGCTTGACAATTTAAATCAGGATCatgatgaaattaattaattataaaggAATGAATGATGCAGCATTCCCATCAGTGTGTGATCCTCTTGGGATAAGTATCTCAACGAGGTATAGAAGTAAATGACATATCTGAGATCTGAGCTAGACTTTGAGGAAGgtgaaaaacctttttttcttttttttttacatgatttcgATAGTTAAAAATTTAAAGCAGAATATTTGACAGCTTACTCTTTGGTCAAATCATTACCAGTTGTGTTTATGTTGTATTTCGTGTGACCACATT

Function

NR:

description
peripherin-2-like

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17343 PRPH2, TSPAN22; peripherin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943156.2 True 2592 mRNA 0.42 4 22244109 22265419

Neighbor

gene id symbol gene type direction distance location
LOC113537563 LOC108263692,LOC108422693 coding upstream 273149 21967741 ~ 21970960 (+)
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 283710 21954905 ~ 21960399 (+)
hcar1-3 NA coding upstream 326441 21914549 ~ 21917668 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding upstream 339000 21899556 ~ 21905109 (+)
LOC113542474 zfp36l2 coding upstream 507576 21733757 ~ 21736533 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding downstream 305952 22571371 ~ 22587644 (+)
yipf3 yipf3,LOC107696384 coding downstream 336137 22601556 ~ 22608030 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding downstream 343060 22608479 ~ 22621693 (+)
dlk2 dlk2 coding downstream 430976 22696395 ~ 22720888 (+)
mea1 mea1 coding downstream 477308 22742727 ~ 22745804 (+)
LOC113544795 NA non-coding upstream 14661 22227445 ~ 22229448 (+)
G50880 eml4 non-coding upstream 202957 22035482 ~ 22041152 (+)
LOC113545609 NA non-coding upstream 228620 22004718 ~ 22015489 (+)
G50783 NA non-coding upstream 369094 21874813 ~ 21875015 (+)
G50772 NA non-coding upstream 375081 21868824 ~ 21869028 (+)
G50929 NA non-coding downstream 1278 22266697 ~ 22337044 (+)
G50938 NA non-coding downstream 20019 22285438 ~ 22288102 (+)
LOC113539127 NA non-coding downstream 159000 22424419 ~ 22449509 (+)
G51161 NA non-coding downstream 268919 22534338 ~ 22536437 (+)
LOC117596907 NA non-coding downstream 463903 22729322 ~ 22736667 (+)
wu:fj16a03 NA other upstream 220298 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1125145 21025733 ~ 21118964 (+)
G49862 NA other upstream 1668630 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1851508 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2888011 19341350 ~ 19356098 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 219891 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 518909 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 645725 22911144 ~ 22913552 (+)
G51562 NA other downstream 1189009 23454428 ~ 23455549 (+)
G51749 NA other downstream 1431613 23697032 ~ 23697294 (+)

Expression


Co-expression Network