LOC113544434 (LOC108262902,LOC108442942)


Basic Information

Item Value
gene id LOC113544434
gene name LOC108262902,LOC108442942
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15457511 ~ 15473941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943267.2
AATGGCCCTGGTCTAAGACTCATCATTGGATTAGCTTTAGCTCTCCTCAGTCTAAAACAACCACCTTCAAAGAGACACCTGCTTAGATCCAACCACTGCCACTTTCCTTGGACTGTTTCAGTTTTTTAGGATGAATGTTGATAAAAGGATACTTTCACCATTTATGTTATTGGTACATTTCCAGTTTGTAGCAACACAGAGCGATTACGCACCATATTTCTATGACAATGGGCCCCAGAGTAACAACGGTAATCTGGCATTGTTCAGTCTTTCAGAGGACACGCCAAAGGGAACACATATATATGTTCTGAATGGAACTGATCCAGAGGGACAGCCCGTAAGATATGGCCTGGGCTTTGATCCAGGATCTAAAGAATACTTTAGTGTTGATCCCATATCTGGGATAGTTACTCTGGTAGAGGAACTTGACAGAGAGATACAGGATGAGATTGGGGTCCTTGTCAGTATTTCTGATGACTTTAATAAAGTAGTAGAAAAAGTGAGGGTGTTTGTGATGGATGCCAATGATGAGGAGCCACAGTTTCAGAACCTGCCCTCCATTGTGGACGTGCCAGAGagCACACCCTCTGGGAGCAGTATATTTAAAGTGCAGGCTGTGGATAGAGATACAGGCTCAGGTGGATCTGTCACCTACTTTCTTCAAAGCACTGGCCCAAACACTAAGTTTGCTATTGACCGCCACAGTGGAGTGTTAAGGATAAAAGTGGGTGAGGCTCTAGACTATGAGAGAGTGAGGACACATTTTGTTACTGTGGTGGCAAAGGATGGAGGCGGAAGTTATAATGGAAGGGAACAGGTGATGTCATCGTCTGCTACCTTGACAATTAATGTGATTGACAGTCAGGACACTCCTCCCAGTTTTGTTGGTACACCATACTTTGGCTACGTCTATGAAGTCTCTTCACTTgGATCTGAAATATTCACTGTTTTTGCCCAAGATGGAGATGTAGAAACTCCTAATCCAATTATTTATTCTCTTGAAAGTGGAGCTGATGGTGTATTTAGCATCAACAAAACAAGTGGCTGCATCACTCTCCTAGCCTATCCAGATAATTtaagaaaggaaatgtttaatatcaaGGTCAAGGCTTCAGAGGTGAATTCACAGGGAAGTGTCATGGACTTTGCTATCACCACTGTAACTATTCGAGTAATGGACCTGAACAACCACCCCCCTACCTTTTATGGTGAGAATGGCCCACAGGACACCTTTGAGTTGACCATGTATGAACATCCTCCAGAGGGAGAGATATTGAGGGGCTTGAGGATTACAGTCAATGACTCAGACCAGggcGCAAATGCAAAGTTCAACCTAAGGCTGGTGGGACCAGGTCATATGTTACGAGTGGTCCCACAGACTGTCCTTAATGAAGCTCAAGTCACTTTATTAGTAGAAGACTCCACTGCAATAGACTATGAGAAATTCCAGTTTCTGACATTCAAGATTCTTGCAGTGGAAATTGATACCCCCGAGAGATTCAGTGCCACCGCAGATATAGTCATACACTTGCTTGACACTAACGATAACGCTCCAAGATTCTCCTCTGATTTCTATATTGCACGAGTCCCAGAGAACTCACCTGGTGGCTCCAATGTTGTGTCTGTGACAGCTAAGGATCCAGACTCTGGTTTGTGGGGTGTTGTCAAATACTCCATCCATGGCTCAGGATCAGATCTCTTCTTCATCCAGTCAGATTCAGGGATCATCTACACCCAGCCCTGGGCCAGTCTGGACGCTGAGGTGAAGTCCAAGTACAATTTCTTCATTAAGGCTGAGGACACAGAGGGAAAATACAGCCTTGCTGAAGTTTTTGTCACAGTTCTGGACCTCAATGATCATCGACCAGAGTTCAATGAGAATATTTTAGAGAAAACAATGATCATTGGCGCACCAGTGAAAATAGAGGCAATAGATGATGATGCAGAGGAGCCAAACAATGTTATTGAGTATTCAATCATGAAAGCAGAACCGGACAATATATTTGACATCAATGCAGACACAGGAGAGATCAGATTGAAGCCCTACATCAAGTCAATGGACATAGTGCAAAACATCACAAATCAGAAAGACTGCACGTGGTCTGTGGTGGTCCAGGCCAGAGACAGAGGCTCCCCGTCTTTCAGTACAACCACACTTGTGAAAATTGATATCACAGAAGCGACTCGACTCAATGGCCCATTGCCATCCTTTTTAATGAAAAGTCGAGAAAATCCCATGCAAATCCTTGGCATGATCGCAGCTGTCATTATAGCTTTGGTTTTTGTGACTGTCTTGATCTCTACGGCTATTTTCATGCGTAATAAAAAGTCTAACAAGGTCTTGCCTTCTCGACGGATCATCAGAAGAAAACTTAGGCAACACAAGCAGTGGAACTTCCATAATCCCTTCAAACAACAGAACAATAGTGAAAGGTTCATGAAAGAATCTGAGGTCCCAGAGAATGTCAACTGTAACaataacaatgtgtgtgtgcatcactcCCTACCTCTGCCACCTCCACTGCCAGGCTATTCCAGACTCGGAGAGCGACCTTGGGCAGTATCATCCATTTCTGCAACAGTGGCAAAGAGGAATAAACAGAGCCACGTCAACACAGCACTGGTTTCTGAGCTCAAATTAAGACTTCAGCAGAAGAAATTGATGAACCAATACTAGTGCTTtgagtatatgtgtatatttgagATGTGCACATTtgtacacactctacactaatGTTCAGTGGGGATGTAAGAAGTGTGTAAATTTTGCCAATCATCTGGTCATATATCATATGATATGAGAAATACATGACTTACTTGTCCTAAGGACAAGATCTCAGCCTATATTTCTGTTTCACTGCCAATCATATGAGCCAATTAGTTTTTAACGCTATGTAAGTTGGTAGCAGGCTCCCACCAAACTAATCTGCCatttattgtaaaaaataaaataaaataaaataaaataccttaCTT

Function

NR:

description
PREDICTED: cadherin-related family member 1-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16501 CDHR1, PCDH21; cadherin-related family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943267.2 True 2976 mRNA 0.43 18 15457511 15473941

Neighbor

gene id symbol gene type direction distance location
rgra rgra,rgr,LOC108262941,LOC108442935,LOC107588645,LOC107585363 coding downstream 11996 15436535 ~ 15445515 (-)
slc18a3a slc18a3,slc18a3a,LOC108262949,LOC108442244,LOC107708354,LOC107716340,LOC107683739 coding downstream 25748 15429014 ~ 15431763 (-)
chata chat coding downstream 29271 15418742 ~ 15428240 (-)
LOC113544576 hps6 coding downstream 373182 15079023 ~ 15084329 (-)
pcgf6 pcgf6,LOC107716281 coding downstream 432683 15018483 ~ 15024828 (-)
hif1an hif1an,LOC107707391 coding upstream 206780 15680721 ~ 15696855 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351 coding upstream 229218 15703159 ~ 15708376 (-)
scdb scd coding upstream 237189 15711130 ~ 15718040 (-)
trmt2b trmt2b coding upstream 247340 15721281 ~ 15722878 (-)
LOC113544455 LOC108263660 coding upstream 257518 15731459 ~ 15732753 (-)
G46869 NA non-coding downstream 303815 15106917 ~ 15153696 (-)
G46754 NA non-coding downstream 391512 15064518 ~ 15065999 (-)
G46750 NA non-coding downstream 396338 15060856 ~ 15061173 (-)
G46711 NA non-coding downstream 445061 15012247 ~ 15012450 (-)
G46680 NA non-coding downstream 520202 14937096 ~ 14937309 (-)
LOC113538630 NA non-coding upstream 110224 15584165 ~ 15591191 (-)
G47114 LOC101463634 non-coding upstream 122788 15596729 ~ 15599206 (-)
LOC117596835 NA non-coding upstream 145664 15619605 ~ 15673458 (-)
G47130 NA non-coding upstream 223137 15697078 ~ 15697414 (-)
G47158 NA non-coding upstream 259892 15733833 ~ 15734079 (-)
c3h10orf53 NA other downstream 41028 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 672758 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1265268 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2022025 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 2426315 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 970755 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 1505190 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1997246 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2087463 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 2104237 17578178 ~ 17661419 (-)

Expression


Co-expression Network