dnajb12a (LOC108263659,LOC108443064)


Basic Information

Item Value
gene id dnajb12a
gene name LOC108263659,LOC108443064
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15722881 ~ 15730701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943305.2
GTTTTGGTCGCGTCATTATGCGGCGCCTAAAAGCCATTTCAGTTCCGCTGTCGCAATGGAATCAAACAAGGACGAAGCGGAACGCTGCATAGAGATATCTATCGCGGCGCTTCGAGATAATCAACCCGACAAAGCTCGAAGATTCCTGGAGAAGGCACAGAAACTGTTTCCCACACAGAAGGCACAACGTTTATTAGAATCTATAGCTCTGAATGGAAACACACATGGCAGTAATAATAActgtggagaaaaagagagcagtGGAGTTAGACACCGAGCCACCAGTGCTGGAGAGGAGACATCAGAAGACGGTGCCACAGACGGAGCCAAGTCATATACAGCAGAACAACTGGATGCAGTCAAACAAATAAAGAAGTGCAAAGACTACTATGAGATTCTGGGAGTCAGTAAAGATGTGTCGGATGATGATCTGAAAAAAGCTTATAGAAAACTGGCTTTGAAATTCCATCCGGATAAAAACCATGCTCCAGGTGCTACAGAGGCATTTAAAGCTATCGGGAATGCGTATGCCATACTTAGTAACACAGAAAAGCGGAAACAGTACGACCTTTATGGTGAGGAGAAAGTTCACCAGTCACGTCATGGCCATTCTCATCACGGCTTTGAGGCAGATATTTCGCCTGAGGATCTCTTCAACATGTTCTTTGGAGGCGGATTCCCATCAAGTAATGTCCATGTTTATAGTAATGGCAGGATGAGATTTGGACATAACCAGAGGCATGAACGAAGAGAACAACGGAGAGATGGAAGCCTTGCTCTGTTTGTTCAGCTGATGCCCATCCTCGTCCTCATTGTAGTTTCAGCCCTTAGCCAGTTGATGGTGTCCAGCCCTCCCTACAGTCTAAGCCACAGGCCATCCTCAGGGCACACGAACAGGCGACAGACAGCTAATCTGAAGGTGCCTTACTATGTGGGTGACCACTTTTCAGAAGAATATACTGGAAAGCATCTTAAGAATATTGAGCAAAGTGTGGAGGATGACTACATTTCAAACCTTCGAAATAACTGTTGGAAGGAAAAGCAACAGAAGGAAGGACTGTTGTATCGGGCACGGTATTTTGGAGATTCAGACTTATACCAAAGGGCCCAGAAGATGGGTACACCCAGTTGTTCAAAGCTGTCAGACATTCAAGTCCTTTTACATGGACACTGAAAAACAAgaaggtCCATATTTGAAGGTGACCAACTACAAACTCACCAAACTTTCAGTAAAAGTAGAGTGGGAATTTGCACCagttcaagaaaaaaa

Function

NR:

description
dnaJ homolog subfamily B member 12

GO: NA

KEGG:

id description
K09518 DNAJB12; DnaJ homolog subfamily B member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943305.2 True 1270 mRNA 0.45 9 15722881 15730701

Neighbor

gene id symbol gene type direction distance location
cuedc2 cuedc2 coding upstream 45432 15673435 ~ 15677449 (+)
pax2a pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 coding upstream 97035 15590118 ~ 15625846 (+)
chst3a LOC108262760,LOC108442959 coding upstream 235358 15480527 ~ 15487523 (+)
lrit1a LOC108262901,LOC108442250 coding upstream 272001 15447423 ~ 15450880 (+)
ogdhl ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740 coding upstream 309491 15388496 ~ 15413390 (+)
spock2 spock2,LOC108262742,LOC108443083,LOC107668819,LOC107673954 coding downstream 15752 15746453 ~ 15773703 (+)
pald1b LOC108263458,LOC108443100 coding downstream 68527 15799228 ~ 15812772 (+)
rps24 rps24 coding downstream 90392 15821093 ~ 15827467 (+)
zmiz1a zmiz1,LOC108443181 coding downstream 142616 15873317 ~ 15986353 (+)
ppifa ppifa,LOC108263515,LOC108442288,LOC107588732,LOC107668776,LOC107564349,LOC107673899,LOC105909881 coding downstream 256738 15987439 ~ 15991054 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding upstream 7357 15711137 ~ 15715524 (+)
G46849 NA non-coding upstream 249011 15473201 ~ 15473870 (+)
G46833 NA non-coding upstream 303239 15419029 ~ 15419642 (+)
G46765 hps6 non-coding upstream 638571 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 707700 15014123 ~ 15015181 (+)
G47071 NA non-coding downstream 162880 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 302603 16033304 ~ 16035339 (+)
G47224 NA non-coding downstream 373135 16103836 ~ 16104050 (+)
G47265 c3h10orf71 non-coding downstream 461994 16192695 ~ 16203524 (+)
G47406 znf488,prdm8,LOC107757101,LOC107708270,LOC107673884,LOC107548615,LOC107588729,LOC107668783 non-coding downstream 664304 16395005 ~ 16397038 (+)
borcs7 borcs7 other upstream 748813 14972568 ~ 14974068 (+)
cgas NA other upstream 1354781 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 1436339 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 2221831 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2688531 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 62705 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 340013 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 393926 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 503813 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 554421 16285122 ~ 16308898 (+)

Expression


Co-expression Network