tlx1 (tlx1,LOC107588667,LOC107585374,LOC107694453)


Basic Information

Item Value
gene id tlx1
gene name tlx1,LOC107588667,LOC107585374,LOC107694453
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14785440 ~ 14791568 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943619.2
CGCGGCTCCCTCCATCCGGCAGCCTTGCTCTAAGCCAAAAAGGAGGTAGGGGGAAAACGACAAACGACTGAAGTTGAGTGTTTCTCACACATGCTCACGCAGTCGTGGTTCTGAGATAGCGAGGGTCCGAGCACTAAGCCGCGCTCCTGTAGCTGCGTGATCAGGCGCGGCGCGCGGAGGAGCTCTGGGAGCGCGCGCCTCTTCGGGACTATGGATCATAACATAGGAGCACATCTCCACCACACACACGTAGACTCCATCAGCTTCGGCATCGATCAGATTCTCAACAATGCAGAGCAAGGGAGCTGTATGATCTCTAACCCCAGGATGCAGGACTTGGACTACGGGCTGGGGAGCATTGTGAGCAATGCCTACAACACCATGACGGGCAACTACAACGGCAATAACACCGGCGCATACACCAGCAATGCGTGCAGCGCTGCACCACTCACTGGCTCCTACAACATGAACGTTGGCATGAACGGGAGCGGAAACGGCGTGAACGCGTCCGGGGTGATCCGTGTACCCGCACACCGGCCACTCAACAGCGTGCACTCCTCCATTCCCACAAGCGGCGCCACGGTGCACAACATGGCAGGCATGGGCACTCTGAACAACCTGACAGGACTAACATTTCCGTGGATGGAGAGTAACAGGAGATACACCAAAGACAGGTTTACAGTGGCCCTCTCACCCTTCACTGTAACACGCCGTATAGGTCACCCGTACCAGAACCGCACACCaccgaagaagaagaagccgaGGACGTCGTTCACGCGCCTGCAGATCTGCGAGCTGGAGAAGCGCTTTCACCGCCAGAAGTACCTGGCTTCAGCGGAGAGAGCCGCTCTGGCAAAAGCACTTAAAATGACTGATGCACAAGTCAAAACATGGTTCCAGAACAGAAGGACAAAATGGAGGAGGCAGACGGCGGAGGAGAGAGAGGCCGAGCGGCAGCAGGCGAATCGCTTATTAATGCAGCTGCAGCAGGAAGCTTTTCAAAAGACTCTGAACCAGCCTGTAACTCCAGACCCGATCTGCCTGCACAACAGCTCCCTGTTCGCCCTGCACAACCTGCAGCCATGGACTGATAACACCAACAAGATCAGCAGCGTCTCCACCTGCGACTAGCAGCACCACCTCTTCCTTTCTGCAGCTCTAGCTCTGTATCACTGAGTAATCCCGGCGTCACTTTTCCTCCACCTACCACTGCTCCTGTGTTACTGTCAGCCTGCAGGAGAGCAGGCTTCATTCCCCACGGCTTGCTCTTGTCTCCAGTCTGAACGAAAACTCTAACGAATTATTCCAGATATCAGGTGTTTGAACACATGTGTAGTAGGCTATATTTTTATACAGCATTTTTTGCACTTTTACTCTTCACTGCATTTTAGATTAAATGGCGCGTGAATGCCACAAAGTCCTGGGTTTTAGTTGcaacaccattttttttaaagctaagcAGAAAATGGACTTGAAGAATCAGGTTTCAAGCACTTATTCCGGAGGTATGATACTCAAAACACCTCCTTTCAGACAAATCCGGTAATTCTGTATAGTTTTGATAGCACATGGTCTGTGTTATGGTTTTAATTTTTGGTAAACAGACAAAGTAAAGACAACAGCAATCACGTAGGctactttacatttatttagcacGCTAAGCTTAATTCCATATTTTCTTCAACATAGCTTTCATCTGAGATAAATCAGAGATAGTTATCTGATACAGAGAGTCTTTTCTTCATTGCTGTTCTGGTTAATGAGACAGCTGGATACCTTATTTTGCAGTAAAACAGCTGTATGTATTATTTTGTCAAGTTCATATTTCATTCAACATTTTTGTTCagataatattttaaacactgaactcaacttttattcctcttctttttcacttaaagcaacatttttatACTGACATCCTGTAGCAAGACAAATTTTAGATAGATATTGGATTTCATTTCAGAGTGAATGACTGTTTCGGTTGCATGATAAATGTATGTCCTCCTCGTTGTATGGGGAATgtaacagtgtgtttgtgttattaacTATATGCagatgtgagagtgtgtttgaaACTTTCCATGGCCATGCTAGAAGAGTATCGTGTTAAGGTCCATCTGCACATTCCAAATGCTACAGTGCATTAAATGTAtcctttaaaaatgacaaaatattaagaCATGGGAAACAAGAGGAAACCCAACATCAACCCAAGCAAAACTAAAATCCGAAGTCATGGCGAGATGTCcataaataagcaaacaaagACTGGTTTAACCCTTTTTATAGACTTTTGATTTTGTGAAGAATTCAAGATTCCATCATAACTGGTTTTATGtctgctttaataaatatttaacatttaatctcCTCATTTTTCCATAAGCGTAAGCTGTAACACAGTTGTACAGGAAACATGCATTGCAAATAGCTGCATTCCAACTTTTCCTGGAACTATTAGATGATGTACATAGGTAGTAACTATTACAGCGTGCACCAAATTTCcagacaaaagtccttcatcagctgtgccaCTGAAGCTGCAGGAGTTAAACGCAGCTGATATGTTGATTTGTTTTCACTGGAAATTTTGTGTACTATGCTACAATTTTTATTACctctacaattttttttactaaggTACCCTGCAGTACAGTATATGGTGGTCAGAGATCAAGACTTATGTGAATAAAATACTTGAACATTGAACATAATGAGTGGTAGGCTATATATTCAGTTTATACAAAAGATCATATTAATGATACCGTTTCACCCAAACAAATTAAGCATATTGGTGCCTAGTcatctttcatttctgtttttaaagaaCACTGTCATTTTTCATGCTGTCATTTTTGTCTATTAACATATGTTAATAGAATTTCCTATTTCCTATATTGTAAAGAGGCTGTAGAATATTATTGCTCAGTATTACGATCATGGAACTGTAATTATGAGAAAAACAAGCTGGGACCCATAAAAACCATGTGATAATTATCTCTAGGTCTCTATCTAggtctctatctctatctctggGTTATTTGGATATTCgatttataaaatactacttgGAATCCTTTCTGATAGTGAAACACTCAGTCGTAGGGGTCTACAGAAAATCTTCCAGAGTTCTCCTGAGGGTCAAAATGGATAACCCTTAAGATTTAAATTCATTCTGAGAGTGTATTCACAAGGGCATATTAgtcttttgcatttatttttcatgcagGTCAAAAATCCAAAGCACATAACTAATCTGGTgtattgttttctgtttaatCATACTGCCAGGAGGTTAATTGTTGCcagttatttcatttcatttcatagaAGTGTGAAAATGATGTGTTAAAATATTCACAATGAATAAACATACATATTGTTTGTTTGATAA
>XM_026943626.2
CGCGGCTCCCTCCATCCGGCAGCCTTGCTCTAAGCCAAAAAGGAGGTAGGGGGAAAACGACAAACGACTGAAGTTGAGTGTTTCTCACACATGCTCACGCAGTCGTGGTTCTGAGATAGCGAGGGTCCGAGCACTAAGCCGCGCTCCTGTAGCTGCGTGATCAGGCGCGGCGCGCGGAGGAGCTCTGGGAGCGCGCGCCTCTTCGGGACTATGGATCATAACATAGGAGCACATCTCCACCACACACACGTAGACTCCATCAGCTTCGGCATCGATCAGATTCTCAACAATGCAGAGCAAGGGAGCTGTATGATCTCTAACCCCAGGATGCAGGACTTGGACTACGGGCTGGGGAGCATTGTGAGCAATGCCTACAACACCATGACGGGCAACTACAACGGCAATAACACCGGCGCATACACCAGCAATGCGTGCAGCGCTGCACCACTCACTGGCTCCTACAACATGAACGTTGGCATGAACGGGAGCGGAAACGGCGTGAACGCGTCCGGGGTGATCCGTGTACCCGCACACCGGCCACTCAACAGCGTGCACTCCTCCATTCCCACAAGCGGCGCCACGGTGCACAACATGGCAGGCATGGGCACTCTGAACAACCTGACAGGACTAACATTTCCGTGGATGGAGAGTAACAGGAGATACACCAAAGACAGGTTTACAGGTCACCCGTACCAGAACCGCACACCaccgaagaagaagaagccgaGGACGTCGTTCACGCGCCTGCAGATCTGCGAGCTGGAGAAGCGCTTTCACCGCCAGAAGTACCTGGCTTCAGCGGAGAGAGCCGCTCTGGCAAAAGCACTTAAAATGACTGATGCACAAGTCAAAACATGGTTCCAGAACAGAAGGACAAAATGGAGGAGGCAGACGGCGGAGGAGAGAGAGGCCGAGCGGCAGCAGGCGAATCGCTTATTAATGCAGCTGCAGCAGGAAGCTTTTCAAAAGACTCTGAACCAGCCTGTAACTCCAGACCCGATCTGCCTGCACAACAGCTCCCTGTTCGCCCTGCACAACCTGCAGCCATGGACTGATAACACCAACAAGATCAGCAGCGTCTCCACCTGCGACTAGCAGCACCACCTCTTCCTTTCTGCAGCTCTAGCTCTGTATCACTGAGTAATCCCGGCGTCACTTTTCCTCCACCTACCACTGCTCCTGTGTTACTGTCAGCCTGCAGGAGAGCAGGCTTCATTCCCCACGGCTTGCTCTTGTCTCCAGTCTGAACGAAAACTCTAACGAATTATTCCAGATATCAGGTGTTTGAACACATGTGTAGTAGGCTATATTTTTATACAGCATTTTTTGCACTTTTACTCTTCACTGCATTTTAGATTAAATGGCGCGTGAATGCCACAAAGTCCTGGGTTTTAGTTGcaacaccattttttttaaagctaagcAGAAAATGGACTTGAAGAATCAGGTTTCAAGCACTTATTCCGGAGGTATGATACTCAAAACACCTCCTTTCAGACAAATCCGGTAATTCTGTATAGTTTTGATAGCACATGGTCTGTGTTATGGTTTTAATTTTTGGTAAACAGACAAAGTAAAGACAACAGCAATCACGTAGGctactttacatttatttagcacGCTAAGCTTAATTCCATATTTTCTTCAACATAGCTTTCATCTGAGATAAATCAGAGATAGTTATCTGATACAGAGAGTCTTTTCTTCATTGCTGTTCTGGTTAATGAGACAGCTGGATACCTTATTTTGCAGTAAAACAGCTGTATGTATTATTTTGTCAAGTTCATATTTCATTCAACATTTTTGTTCagataatattttaaacactgaactcaacttttattcctcttctttttcacttaaagcaacatttttatACTGACATCCTGTAGCAAGACAAATTTTAGATAGATATTGGATTTCATTTCAGAGTGAATGACTGTTTCGGTTGCATGATAAATGTATGTCCTCCTCGTTGTATGGGGAATgtaacagtgtgtttgtgttattaacTATATGCagatgtgagagtgtgtttgaaACTTTCCATGGCCATGCTAGAAGAGTATCGTGTTAAGGTCCATCTGCACATTCCAAATGCTACAGTGCATTAAATGTAtcctttaaaaatgacaaaatattaagaCATGGGAAACAAGAGGAAACCCAACATCAACCCAAGCAAAACTAAAATCCGAAGTCATGGCGAGATGTCcataaataagcaaacaaagACTGGTTTAACCCTTTTTATAGACTTTTGATTTTGTGAAGAATTCAAGATTCCATCATAACTGGTTTTATGtctgctttaataaatatttaacatttaatctcCTCATTTTTCCATAAGCGTAAGCTGTAACACAGTTGTACAGGAAACATGCATTGCAAATAGCTGCATTCCAACTTTTCCTGGAACTATTAGATGATGTACATAGGTAGTAACTATTACAGCGTGCACCAAATTTCcagacaaaagtccttcatcagctgtgccaCTGAAGCTGCAGGAGTTAAACGCAGCTGATATGTTGATTTGTTTTCACTGGAAATTTTGTGTACTATGCTACAATTTTTATTACctctacaattttttttactaaggTACCCTGCAGTACAGTATATGGTGGTCAGAGATCAAGACTTATGTGAATAAAATACTTGAACATTGAACATAATGAGTGGTAGGCTATATATTCAGTTTATACAAAAGATCATATTAATGATACCGTTTCACCCAAACAAATTAAGCATATTGGTGCCTAGTcatctttcatttctgtttttaaagaaCACTGTCATTTTTCATGCTGTCATTTTTGTCTATTAACATATGTTAATAGAATTTCCTATTTCCTATATTGTAAAGAGGCTGTAGAATATTATTGCTCAGTATTACGATCATGGAACTGTAATTATGAGAAAAACAAGCTGGGACCCATAAAAACCATGTGATAATTATCTCTAGGTCTCTATCTAggtctctatctctatctctggGTTATTTGGATATTCgatttataaaatactacttgGAATCCTTTCTGATAGTGAAACACTCAGTCGTAGGGGTCTACAGAAAATCTTCCAGAGTTCTCCTGAGGGTCAAAATGGATAACCCTTAAGATTTAAATTCATTCTGAGAGTGTATTCACAAGGGCATATTAgtcttttgcatttatttttcatgcagGTCAAAAATCCAAAGCACATAACTAATCTGGTgtattgttttctgtttaatCATACTGCCAGGAGGTTAATTGTTGCcagttatttcatttcatttcatagaAGTGTGAAAATGATGTGTTAAAATATTCACAATGAATAAACATACATATTGTTTGTTTGATAA

Function

symbol description
tlx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in spleen. Human ortholog(s) of this gene implicated in adult T-cell leukemia. Orthologous to human TLX1 (T cell leukemia homeobox 1).

NR:

description
T-cell leukemia homeobox protein 1 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943619.2 True 3397 mRNA 0.42 3 14785440 14791568
XM_026943626.2 False 3361 mRNA 0.42 3 14785440 14791568

Neighbor

gene id symbol gene type direction distance location
smap1 smap1 coding downstream 6952 14673081 ~ 14778488 (-)
ogfrl1 ogfrl1 coding downstream 142703 14630895 ~ 14642737 (-)
LOC113537600 rims1 coding downstream 190354 14520938 ~ 14595086 (-)
kcnq5a kcnq5,LOC107718835 coding downstream 270554 14388987 ~ 14514886 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding downstream 398067 14368187 ~ 14387373 (-)
lbx1a lbx1a,lbx1,LOC108262976,LOC107585373,LOC107716305 coding upstream 21137 14812705 ~ 14815300 (-)
LOC113542020 cyp17,LOC103036160,LOC108442132,LOC107695149,LOC107588661 coding upstream 171381 14962949 ~ 14966801 (-)
nt5c2a nt5c2,nt5c2a,LOC107707668,LOC107656928,LOC107716328,LOC107585323 coding upstream 205949 14997517 ~ 15009590 (-)
pcgf6 pcgf6,LOC107716281 coding upstream 226915 15018483 ~ 15024828 (-)
LOC113544576 hps6 coding upstream 287455 15079023 ~ 15084329 (-)
G46576 NA non-coding downstream 159470 14617653 ~ 14625970 (-)
G46591 NA non-coding downstream 170676 14614516 ~ 14614764 (-)
G46590 NA non-coding downstream 171622 14613541 ~ 14613818 (-)
G46304 LOC108263835 non-coding downstream 493807 14289556 ~ 14291633 (-)
G46183 NA non-coding downstream 601354 14183768 ~ 14184086 (-)
G46680 NA non-coding upstream 145528 14937096 ~ 14937309 (-)
G46711 NA non-coding upstream 220679 15012247 ~ 15012450 (-)
G46750 NA non-coding upstream 269288 15060856 ~ 15061173 (-)
G46754 NA non-coding upstream 272950 15064518 ~ 15065999 (-)
G46869 NA non-coding upstream 315349 15106917 ~ 15153696 (-)
sdhaf4 sdhaf4 other downstream 687 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 593197 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 1349954 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1754244 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 2145838 12639530 ~ 12639602 (-)
c3h10orf53 NA other upstream 621345 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 1653128 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2187563 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 2679619 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 2769836 17561404 ~ 17574422 (-)

Expression


Co-expression Network