nkx1.2la (nkx1-2)


Basic Information

Item Value
gene id nkx1.2la
gene name nkx1-2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16991878 ~ 16995154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943638.2
TTTACTGATTTAAAAGTGGAGGAATTTAAGTGCTGGCTTGTTTAAGCCAATTAAGAGAAACCGACTTAGCGCCTAACCGCCAGCTTGCCAGTCACGTGGGCTGAGAGAGCGCGCGCGCGCCTGTTCGAAAGCGGCTCATAGTAAAGAGCGCGCGCCGCTCCATCTGTACCTTCCGCGAAGAGTGCACACACCtctccatccacacacacacacacacacacacctccatccacacacacaaacacacacacttagtttACCATCCACAAACGCACCGGGAAGAGCGCGCACACAAAACTCcattcatatatacacacacacacactttaccatCCACACACGCACCGGGAAGAGCGCACAcacctcttcacacacacaaacacacacacactcacagacttTATGATCCACACACGCACTAGGAAGAGTGCACACCCCTCTCCATCTACACACCCCTCTCCATCTACACACACCTCTCCGTCCGCCGGTAAGAGCCGCATCCGCGCGCCAGTGTATCTCCGACGTTAACAGGAAAAGGTTTACAGGAGGATAAAGGAGGTGAAACTCTAGCGAACTTGCTCTCCTGTCGAAGTGTCCTGCTGTCTTCTGGGCAGCGCCCGACTCAAGATGTTTGAACACCAGGATCCCGCGctgaaaacaacagcagctcacagaATTTCCTTTTCAATTATGGACATTTTGGACCCTCACAAGTTCACACGTAAAAAGCGGGCCGGACTTTCCCCAGCGAGCAGCGACACGCCTTTCCGGAGCACAGAGTTTGGAAACATGTCCAGCTCACTCTCTGGCAGAGCTGCTGCTTCTCCACATGAGTCCTCACTTCCCAACAGCAATCCAGGAAGGAGCACAGAGGAGGTGCAGTGCAGCTCTCCGCTCACACCTGATGTGCAGACAACCACCGCCCTCGGAGACACACACTCTCGGCTCTCATGTCCCAAAGACCCGGATGAGGCGGACGGCGATGAAGAAAGCAGTAGCATTAACTGTGCTGCAGACGCATCGAGCACGGAGGATCCCGCGCGCCGCCGCCGTCGCTCCCGGACCGATCACGGGAGCGCGCGCCCCCGACGCGCCAGAACCGCGTTCACCTACGAGCAGCTGGTGGCGCTGGAGAACAAGTTCCGCGCAACGCGCTACCTGTCCGTGTGCGAGAGACTGAACCTGGCGCTGGCGCTCAGCCTGACAGAGACCCAGGTGAAGATCTGGTTTCAGAACCGCagaacaaaatggaagaaacaAAACCCGGGGGCTGCGGACAGTATCCTGCAACCGCCGAGCTCGAGCGTGAGTCCAGGTGCGGGACTGTGCGGGGCAGCCGTGGCGGGATTTCACTCTTTCCCGCCTTTCAGCGGCGGAAATAGTATTTTTCACTCTTCCAGCGCCATACCATTATCATCCCCTGGTACGCTCCTGCGTCCGTTTTTTTCTACTGGCTACCTGCAACCCACCTTCTTCCAGCCTCATTTATAAAAGGCAAGATGACCTGCTAAAGGAAAGGAAGCGGAATGACGAACTTAAAAGTtatgatgtaaatataacaaGACTTCATCGCAGGACTTCAAACTGGCTCTTTCTCATTGCCAGTCTGGTACATCCAGCACACATGACCCTGCAGAGCTACTGCCTCTGTAAACACATCTTAGTTATTTAAGGACTAAGAGATAAACTACAGCCCATACTATAGCTCAGTCATGAGTCACATTTTATGAACTAAGATCAAACCTTGTTAATACTTGATACATCTGCAACAACATATTTATGTTGTTACAAGATGCATTATTGGATCCTTTAATCGAAAAAAGTGTTCATATCAGTGATTTACATAATGTATGtgctataaattacattaaatccAACTTTTTAATAGTATATTATGGGAAACTGTGAAGAAAggaaatgtataataataaa

Function

symbol description
nkx1-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: NK1 transcription factor-related protein 2

GO: NA

KEGG:

id description
K09309 NKX1; homeobox protein Nkx-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943638.2 True 1932 mRNA 0.51 2 16991878 16995154

Neighbor

gene id symbol gene type direction distance location
hps1 hps1,LOC107719232 coding upstream 23623 16955117 ~ 16968255 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding upstream 43100 16897731 ~ 16948778 (+)
got1 got1,LOC107601049,LOC107665595 coding upstream 117162 16864808 ~ 16874716 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding upstream 167818 16807900 ~ 16824060 (+)
golga7bb LOC108443489,LOC108263631,LOC107375346,LOC103368019 coding upstream 301264 16676120 ~ 16690614 (+)
prkg1a prkg1,LOC108263833,LOC108443637,LOC103355670,LOC100694992,LOC107098368 coding downstream 17478 17012632 ~ 17083433 (+)
dkk1a LOC108262840 coding downstream 92439 17087593 ~ 17089944 (+)
dhx57 dhx57,LOC107699277,LOC107081174 coding downstream 470494 17465648 ~ 17488083 (+)
atl2 atl2,LOC107699303,LOC107586488,LOC107708410,LOC107589558 coding downstream 502029 17497183 ~ 17508721 (+)
si:ch211-250c4.5 LOC108262903 coding downstream 513698 17508852 ~ 17511933 (+)
G47672 NA non-coding upstream 153477 16838182 ~ 16838401 (+)
LOC117596359 NA non-coding upstream 460498 16492318 ~ 16531380 (+)
G47431 NA non-coding upstream 531967 16459245 ~ 16459911 (+)
LOC117596920 NA non-coding upstream 540113 16442062 ~ 16451765 (+)
G47406 znf488,prdm8,LOC107757101,LOC107708270,LOC107673884,LOC107548615,LOC107588729,LOC107668783 non-coding upstream 594840 16395005 ~ 16397038 (+)
G47852 NA non-coding downstream 4026 16999180 ~ 16999395 (+)
G47856 NA non-coding downstream 11352 17006506 ~ 17006922 (+)
G47951 NA non-coding downstream 136308 17131462 ~ 17132001 (+)
G48095 NA non-coding downstream 472794 17467948 ~ 17468148 (+)
G48133 NA non-coding downstream 606720 17601874 ~ 17603154 (+)
LOC113541016 ankrd2 other upstream 14849 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 524528 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 682980 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 754336 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 857876 16124627 ~ 16134002 (+)
dlg5a dlg5 other downstream 1181587 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 1907284 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 2031814 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 2219053 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 2260910 19256064 ~ 19262088 (+)

Expression


Co-expression Network