lrit1a (LOC108262901,LOC108442250)


Basic Information

Item Value
gene id lrit1a
gene name LOC108262901,LOC108442250
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15447423 ~ 15450880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943684.2
TATAACATGCCGCTACGATTTCCATAAATGAAAAAGTGGAGTTTCTTTAATCAGACTCTTTCCTGGGTATTGAAGTACAGGGGATTAAAGATGATGGTCATTGTCTTCTTTGCTCTGTTGCTCGCATCAGGTGGATTTCCGCCTGCACAGACCTCATGTCCTTCTCAGTGCAGCTGCCACTATCACAACCTGAGTGATGGATCCAGGGCCAGGAGTGTGATTTGTAATGACCCTGCAATAACCCTGGTGCCTGCCAGCTTCCCCACTGATACATCCAGTCTCAGAATAGAAAAAACAGCTATAAAGAGGATCCCCAGTGAAGCATTTAAATACCTCCCAAATCTGGAGTTTTTGTGGATGTCCTTCAATGTATTGTCATCAGTGAACGTGGACAGCTTCCGTGGACTGAACAGTCTGGAAGAGCTAAGGCTTGATGGAAATTCCCTTACTGCTTTTCCTTGGGAGTCCTTAAAGTATATGCCTAACCTAAAGCTCCTTGACTTGCACAGTAACAAACTCTCTTCAGTCCCTACAGAGGCAGTAAAGTACATAAGGCCTTTAACATACCTGGATCTCTCCAGCAATAACCTGCTGACGATGCCGACTGAAGTCCTTACTACTTGGATGACAGTCAAACCCATCCAAGGAGCAGAGAATTCAAAAATTATTCTTGGACTCCATGACAATCCTTGGCTTTGTGACTGTCGGTTGTATGACCTGGTCCAGTTCCAAAAGTCTCCATCACTGGCTGTGGCCTTCATTGACACCAGCCTGAGGTGTACTGCTCCTGAGAGTCTCTCAGGAGTTCTGTTCAGTGATGCTGACTTGAGACGATGCCAGGAGCCCAAGGTTCATTCAGCTGTATCCCGCATCAGGAGCACAGTGGGCAGCAATGTGTTACTGCGGTGTGGTGCTGTTGGCGTCCCCATGCCTACGTTGACATGGAGAAGGGCAGATGGGAAAACGTTGAATGGGACAGTTAAACAAGAGAACTCTAAAGATGGAATTGTTTGGTCTATTCTAAATGTGCCTGTTGTCTCCTTCCATGACTCTGGGAAATACATATGCAAAGCAACAAACTATGCTGGGAGTGCAGAGGCTTTGATTGCTTTAATCATAAGCAAGTCTCCAAAGTTAGACAATGGAACTGAAACTGTAAAGAAAATCAAAGAAGACAAACAAAACcctgctgaaaaagaaaaaattattacCAAATATATTTCCCCAAGACCCTCTTCTGTTCCTGTAATAACAAGTCCTATGGTTTACACTGGTCCCTATCCTGGCATGCAGAGTGACAGCGTTGCAGAGAGTGGGACGAACACACATCCAACTAGTCCTGATCGACTTCTAGAGGCCAATCTGAGCAACCTCGCAGCCAATGCCTCCTCTCTGCAGCAAGACCTTAACAGGATTGTTCGCTCAGTCAAAGTGGTTGGAGATACAGACTATTCTGTGTGCCTAACCTGGAGAGCCCCAAAAGCCAATAACTCGACTGCCTTTAGTGTGCTGTATGCAGTATTTGGAGAGAGGGACATGCGCAGAATCAATGTCAGTCCTGGAAACAATCGAATCATCATTGAAGGCTTGGTTCCAAAAACCAAATAcattgcctgtgtgtgtgtaaaaggtcTGATCCCTAAAAAAGAGCAGTGTGTAATCTTTTCCACAGATGCAGCAGCAAGTGCTAATGGGACCCAAAAGCTTATTAATGTAGTTGTAATATCCGTTGCCTGTGTGATAGCTGTGCCTCTGACTGTGGTCGTCTGTTGTGGAGCACTTAAGAGGAAAATCCAAAAACTTCTGAGCAAAAAGTCCAAAGATATTCAGGATTCATATGTAACATTTGAGAGTCTTTCGCCCAGCACAAAGGCCAAAGGCCTGGAGGGGGACTATCTGTCCAAACTGAACCCAGAGGAGTCCAATAGATTGCTATCAGCCAGGTCTAGCCTGGACTCTGAGTCCATCACTCAGATTGAAGAACAGCGAAACGAGTACTTGTGCTGACAGTTTTCCTCAATCACTACTCCATCAACCAGCGTAAGTATCCATGCTCAGCACCAGTATCAGAATGCACATAGTTTATACCAGAACTGCTTTGCTGAGCATTGCTCAACAATTCCAGTTAGTAACTAAGGACACAATGAGATGGCTTTGAGTCTCTCCCTTTGATTTAATATTGTTCTCTTTTACTATAGTCACAGTCTTAATTAAAAGACTAAGCCATATGGCTGGTGGTGGGGTTGTGGTTGAGGAATCTCtgaagcatgcacacacacacaaactactaACTGACTGTAATGTACTTAGAGTATACAtttaatacagtatgtgttcaTCTTTGTATTCCActgataaattaaattaagtaaattaaatatcAATGGACATAACGCTTTCA

Function

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943684.2 True 2401 mRNA 0.44 4 15447423 15450880

Neighbor

gene id symbol gene type direction distance location
ogdhl ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740 coding upstream 34033 15388496 ~ 15413390 (+)
parga LOC108263327 coding upstream 61029 15355817 ~ 15386394 (+)
myofl LOC108263542,LOC108442891 coding upstream 93010 15325232 ~ 15354413 (+)
unc5b unc5b,LOC108263852 coding upstream 125376 15259363 ~ 15322047 (+)
ly6pge si:ch73-28h20.1,LOC107673896,LOC107585320 coding upstream 287338 15157757 ~ 15160085 (+)
chst3a LOC108262760,LOC108442959 coding downstream 29647 15480527 ~ 15487523 (+)
pax2a pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 coding downstream 139238 15590118 ~ 15625846 (+)
cuedc2 cuedc2 coding downstream 222555 15673435 ~ 15677449 (+)
dnajb12a LOC108263659,LOC108443064 coding downstream 272001 15722881 ~ 15730701 (+)
spock2 spock2,LOC108262742,LOC108443083,LOC107668819,LOC107673954 coding downstream 295573 15746453 ~ 15773703 (+)
G46833 NA non-coding upstream 27781 15419029 ~ 15419642 (+)
G46765 hps6 non-coding upstream 363113 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 432242 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 435434 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 820933 14617608 ~ 14626490 (+)
G46849 NA non-coding downstream 22321 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 260257 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 442701 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 582424 16033304 ~ 16035339 (+)
G47224 NA non-coding downstream 652956 16103836 ~ 16104050 (+)
borcs7 borcs7 other upstream 473355 14972568 ~ 14974068 (+)
cgas NA other upstream 1079323 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 1160881 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1946373 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2413073 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 342526 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 619834 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 673747 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 783634 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 834242 16285122 ~ 16308898 (+)

Expression


Co-expression Network