LOC113544778


Basic Information

Item Value
gene id LOC113544778
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17903229 ~ 17919337 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943721.2
ttttcgaaCACCTGGTCGAAGTGGTGTGTAGCTTTAATGACGTTGTAGTCCTATCAAGGGGCAGGTGATTTCCGAAGGTAAAAAGAGAAGGTAAACATTAGTGCAGGTCGTTTGAATTTTCTGAAGTGGAAAGCGAAAGGAATTGTGGATTTAAGGTTTTCAGGTGTCTGCTTAACTAACCTGCAGTAACTTACGATCACAGGCCTTTGGCTGGAAGGATGGCAGATAATATAAAAGGTGAAGCAGATGGACCTAGTGACATTTCAGCATGTGGTGAGGACTCATTCCCAactgaaatgacagaaaataacagaactcaaataaatggcaaaaagaagaagaatagcaTAATAAAGTCCTTCAGAAGAAACTTTCAACGAGCTGGAGAGATGAGTCCTTTGTCCCCGAAAAACAAAGCGCCAAATAACAAAATAGACAGGGCAAGTACTGGAAATGACCTTGGTAATTCCTCTGACTCTCCAGTACAATCTCCAGCTTCACCAATAGAAGAACAGCTTACAAAACAGGAATCTGCCAGATGGAAACTGCGTTTTggaagtaagaaagaaaacacatccAAGCAGGAGCAGCTGGAGGTGTGCACAGAGGTTGTTATGTCATCAGAGGAGAAAAAGTCAGAGGTTACAGGAGGAACAACAGAGGTCTGGAAGTTATACTTCCTACCTGAGATCCCACCAGTACCTTTATCAgTAATGCAGATTAACAATCTCATTAAGAATAATGCCTTGGAAGATGCCTATGTCAATATACTCTCTTTGCGGAACGAGGTTCAATGTGAGCGGGATGAATTGGGTGAAAAAGCTTTTCCAGTTGAACtgttaaataaagagaaagacttAACTCTGCTCTACAACAACCTGAGAGATAAACTTACTGAAATTGTCCAACAATCCTGTGCCCAGCCTTCTTGCAATAAAGAGCTACTAGTGCAGGTGGCTGGCATCATccaagaggaggaaaagagagaaaaagatgagGAGAAGATGGGGGAATGGAGAGATGTTTGGAGGGCTGCAATACAGAGAGGAGTAAAAGAGACACTCAAGGAGATTCATCTGGACAGCCATGAGCAAAATGCTTCCTGGTTGGCAGTACATTTAGGACAAGTGGGAAAAGTGATTGTTGTGCAGTTGGGGAAAGTAAAAGCAGAGCTTATGAGCTCTTACCCACCAAGCTTTAATGTGTTTGAAACATACGTTTCAACCTTTCATAAAGCTGTGGGAGAACACCTGAAAGGGCTTCTGGAAAAAGTGACAGAAGTGAAGGATTACTACGCCCTTCTGGATTTTATTTTGAACTGTTACCAAAGTGAGAAGATTATGGGAAGCAGTTCCTTGCAGCCAGAATTGAAGGAGGAGCTGAAGACTCTTAAACTAGACAATGATTTTCTAGATCAGATCAAGAATGCATACTGCAATCACTTACAGGCAGATGTGAGATCATCTCTGGACAATATAATTAAGCTGGAACATGATGAGATGtggaaagacaaaaataaaccaCAGATTAATGAGGAACTTTAcctctctcacattcacatgGACATCCTGACGTATATTACAGGACCAGTCCAGGCATCCAGTATGCTTGATGTGGAACTGGAGCACAGAGTTATGTGCTGCTGCCTTCATGAGCTAAAGGAATTTCCTAAACGATTTGAGACAGCCTTTGTACAATGGAACAAAACTCTTCTGGATCCCACCCTATGGGCTGAGTATCACATTACTTACATCAACAGCTTCAGAAATTTAAAAGAGCAAATTGAGAGCTACAGACAGAAATGCCCAAGTCAGGTAGAGCAGCTGGCCAAAGAGATAAATGGACTGGTTAACATACTGAGCCAGGCTCTTCTAGAGCATTTCAAAACTGACACTAAGCCTCTTCtaaagatgatgatgacaagGAAGTGGCTGTCCTCTGAAGAAGACTTTCAACAATTGCATAAGAGAATTGAAACTCTGTCCCAACAATGCAAACACATGAGTCCCCAACATGCACAGGAATTTGTGAGTGATGTGCATTACTTTGTGGTGAGGGAGTATATATCTCAGTTGATGAAGAATAACTACTCATGCAAAAACAGGAAGAATGAAAAAGCTGCCACGAAAATAAGAGTGCAATGGAGTGAACTCTGTGAGCTCTTTCAGGAAATGAATTCTGTTCAACACTGGCTCTATCCAGTAGGGGACCACCTGCAAAAGATCattggagagagaaaagagagtgaaaTAAAGAATTACCTACAGCCATTGGTTGATGACTATCCAGATTTCAGCAAAAAGCATCTCTCGGCAGTATTGTATTTTCGTGGAGTAACACGgggcagacagagacagatgatCCTGCAGAAGCTTTCTGACCTGAAGCAACATGCCAATGCTGGAAGCATGCAGCATGTGCTATTCAATGGGATGGAGGCAACAGCGAGCACAGACCTAGTCAACATGCCATGCGCTTGTCTTTTTCCTAACACAGGCAACTAGGCCTCAAAATGCTTGATGTTACCTGTTGAAAAATCCTGTTTTAGCCATATATTTTATAATCCAATACAAAAGTAACATCAGGGCTTTTGAAACCCAAGTGCAATGGTTTTAGAACAAGCACACTGTGAATAATAATTTTAGGATGATAAGATCCTTCACTGAATTCTATGCCTGCACTGCACTCATCTTCTTGGCTGTGATAAACATGTggtctgtgtgctttttaaatGGCTAGGTAATAATGGATGATAACATTATTCAAAAAGAAACCAGACAATAAGAtgcatttctaatttattttccaataacaataTAGATCCTTTAATTATATGGTGTCTTTTGGGGAAAAGATATGATGCTGTGTTCTATTTTTGTCTGCTTTTGAAATCCCCCAGCAATCTCAATAACAGAGAAAGATAAAACAGCAGTTTCAGACCATCTTGGCACACACAGAAAGGAAATGAGcaactaaaagagagagatcaACTGGGATAAAACTtggacaaaaacagaaataggCAGTTGCACAGACTTTActggaaatatttaaaagagGCTGCAGATAGGAATCATAAGGCATTCAGGAGCTGCAGCAGGGTGATACCAATACAGAGCCGGTGACAGTGCCCACCCGTGTGTGACCTGACTGcagaaaaagggggaaaataaCCACAAATATTTCAAGATATGTAGGcctaaaacattttgtgtaaatattattattattattatagaaaagaCAGCCTGCATTTTTGTTAATGTGGTGTAATACTACATACTTTTTGATAGCCAGGCACTCTTTTTGGTCCATACTGTATATCCATGGAGTGACAGCTGTAATCTTTGTTAAACAATATAGCTTGAGTATGTTGACTACTTATATAGTTGATTACTTAGAATTTTTTATGTGGGAACAACCCCCTCACTCAAAATGAAGCAGTGTGTTTGATAAatctgaacatctttgggattcACACAGTATACAAGCATCTTCTAAAACGAATAATGCAATATCCTTGTATATTCATGAATTTTAGCTCCATTTATGTTGTCTATGGACTTCAGTGAGCAGAAAGCTAGAGAATTAAGGCATTGGGCCTCTATGAAATCTAATAAACTAATGTGTCTGTCATGAAAA
>XM_026943730.2
ttttcgaaCACCTGGTCGAAGTGGTGTGTAGCTTTAATGACGTTGTAGTCCTATCAAGGGGCAGGTGATTTCCGAAGGTAAAAAGAGAAGGTAAACATTAGTGCAGGTCGTTTGAATTTTCTGAAGTGGAAAGCGAAAGGAATTGTGGATTTAAGGTTTTCAGGTGTCTGCTTAACTAACCTGCAGTAACTTACGATCACAGGCCTTTGGCTGGAAGGATGGCAGATAATATAAAAGGTGAAGCAGATGGACCTAGTGACATTTCAGCATGTGGTGAGGACTCATTCCCAactgaaatgacagaaaataacagaactcaaataaatggcaaaaagaagaagaatagcaTAATAAAGTCCTTCAGAAGAAACTTTCAACGAGCTGGAGAGATGAGTCCTTTGTCCCCGAAAAACAAAGCGCCAAATAACAAAATAGACAGGGCAAGTACTGGAAATGACCTTGGTAATTCCTCTGACTCTCCAGTACAATCTCCAGCTTCACCAAAAGAACAGCTTACAAAACAGGAATCTGCCAGATGGAAACTGCGTTTTggaagtaagaaagaaaacacatccAAGCAGGAGCAGCTGGAGGTGTGCACAGAGGTTGTTATGTCATCAGAGGAGAAAAAGTCAGAGGTTACAGGAGGAACAACAGAGGTCTGGAAGTTATACTTCCTACCTGAGATCCCACCAGTACCTTTATCAgTAATGCAGATTAACAATCTCATTAAGAATAATGCCTTGGAAGATGCCTATGTCAATATACTCTCTTTGCGGAACGAGGTTCAATGTGAGCGGGATGAATTGGGTGAAAAAGCTTTTCCAGTTGAACtgttaaataaagagaaagacttAACTCTGCTCTACAACAACCTGAGAGATAAACTTACTGAAATTGTCCAACAATCCTGTGCCCAGCCTTCTTGCAATAAAGAGCTACTAGTGCAGGTGGCTGGCATCATccaagaggaggaaaagagagaaaaagatgagGAGAAGATGGGGGAATGGAGAGATGTTTGGAGGGCTGCAATACAGAGAGGAGTAAAAGAGACACTCAAGGAGATTCATCTGGACAGCCATGAGCAAAATGCTTCCTGGTTGGCAGTACATTTAGGACAAGTGGGAAAAGTGATTGTTGTGCAGTTGGGGAAAGTAAAAGCAGAGCTTATGAGCTCTTACCCACCAAGCTTTAATGTGTTTGAAACATACGTTTCAACCTTTCATAAAGCTGTGGGAGAACACCTGAAAGGGCTTCTGGAAAAAGTGACAGAAGTGAAGGATTACTACGCCCTTCTGGATTTTATTTTGAACTGTTACCAAAGTGAGAAGATTATGGGAAGCAGTTCCTTGCAGCCAGAATTGAAGGAGGAGCTGAAGACTCTTAAACTAGACAATGATTTTCTAGATCAGATCAAGAATGCATACTGCAATCACTTACAGGCAGATGTGAGATCATCTCTGGACAATATAATTAAGCTGGAACATGATGAGATGtggaaagacaaaaataaaccaCAGATTAATGAGGAACTTTAcctctctcacattcacatgGACATCCTGACGTATATTACAGGACCAGTCCAGGCATCCAGTATGCTTGATGTGGAACTGGAGCACAGAGTTATGTGCTGCTGCCTTCATGAGCTAAAGGAATTTCCTAAACGATTTGAGACAGCCTTTGTACAATGGAACAAAACTCTTCTGGATCCCACCCTATGGGCTGAGTATCACATTACTTACATCAACAGCTTCAGAAATTTAAAAGAGCAAATTGAGAGCTACAGACAGAAATGCCCAAGTCAGGTAGAGCAGCTGGCCAAAGAGATAAATGGACTGGTTAACATACTGAGCCAGGCTCTTCTAGAGCATTTCAAAACTGACACTAAGCCTCTTCtaaagatgatgatgacaagGAAGTGGCTGTCCTCTGAAGAAGACTTTCAACAATTGCATAAGAGAATTGAAACTCTGTCCCAACAATGCAAACACATGAGTCCCCAACATGCACAGGAATTTGTGAGTGATGTGCATTACTTTGTGGTGAGGGAGTATATATCTCAGTTGATGAAGAATAACTACTCATGCAAAAACAGGAAGAATGAAAAAGCTGCCACGAAAATAAGAGTGCAATGGAGTGAACTCTGTGAGCTCTTTCAGGAAATGAATTCTGTTCAACACTGGCTCTATCCAGTAGGGGACCACCTGCAAAAGATCattggagagagaaaagagagtgaaaTAAAGAATTACCTACAGCCATTGGTTGATGACTATCCAGATTTCAGCAAAAAGCATCTCTCGGCAGTATTGTATTTTCGTGGAGTAACACGgggcagacagagacagatgatCCTGCAGAAGCTTTCTGACCTGAAGCAACATGCCAATGCTGGAAGCATGCAGCATGTGCTATTCAATGGGATGGAGGCAACAGCGAGCACAGACCTAGTCAACATGCCATGCGCTTGTCTTTTTCCTAACACAGGCAACTAGGCCTCAAAATGCTTGATGTTACCTGTTGAAAAATCCTGTTTTAGCCATATATTTTATAATCCAATACAAAAGTAACATCAGGGCTTTTGAAACCCAAGTGCAATGGTTTTAGAACAAGCACACTGTGAATAATAATTTTAGGATGATAAGATCCTTCACTGAATTCTATGCCTGCACTGCACTCATCTTCTTGGCTGTGATAAACATGTggtctgtgtgctttttaaatGGCTAGGTAATAATGGATGATAACATTATTCAAAAAGAAACCAGACAATAAGAtgcatttctaatttattttccaataacaataTAGATCCTTTAATTATATGGTGTCTTTTGGGGAAAAGATATGATGCTGTGTTCTATTTTTGTCTGCTTTTGAAATCCCCCAGCAATCTCAATAACAGAGAAAGATAAAACAGCAGTTTCAGACCATCTTGGCACACACAGAAAGGAAATGAGcaactaaaagagagagatcaACTGGGATAAAACTtggacaaaaacagaaataggCAGTTGCACAGACTTTActggaaatatttaaaagagGCTGCAGATAGGAATCATAAGGCATTCAGGAGCTGCAGCAGGGTGATACCAATACAGAGCCGGTGACAGTGCCCACCCGTGTGTGACCTGACTGcagaaaaagggggaaaataaCCACAAATATTTCAAGATATGTAGGcctaaaacattttgtgtaaatattattattattattatagaaaagaCAGCCTGCATTTTTGTTAATGTGGTGTAATACTACATACTTTTTGATAGCCAGGCACTCTTTTTGGTCCATACTGTATATCCATGGAGTGACAGCTGTAATCTTTGTTAAACAATATAGCTTGAGTATGTTGACTACTTATATAGTTGATTACTTAGAATTTTTTATGTGGGAACAACCCCCTCACTCAAAATGAAGCAGTGTGTTTGATAAatctgaacatctttgggattcACACAGTATACAAGCATCTTCTAAAACGAATAATGCAATATCCTTGTATATTCATGAATTTTAGCTCCATTTATGTTGTCTATGGACTTCAGTGAGCAGAAAGCTAGAGAATTAAGGCATTGGGCCTCTATGAAATCTAATAAACTAATGTGTCTGTCATGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943721.2 True 3642 mRNA 0.40 13 17903229 17919337
XM_026943730.2 False 3639 mRNA 0.40 13 17903229 17919337

Neighbor

gene id symbol gene type direction distance location
LOC117595658 LOC108262911 coding upstream 17933 17867571 ~ 17885296 (+)
aifm2 aifm2 coding upstream 38223 17847464 ~ 17865006 (+)
gins1 gins1,LOC107727378,LOC107708421 coding upstream 80457 17818638 ~ 17822772 (+)
LOC113537762 lipp,LOC108263057,LOC108262195 coding upstream 90635 17806659 ~ 17812594 (+)
pitx3 pitx3,LOC103027456,LOC107678606,LOC107708419 coding upstream 104639 17784828 ~ 17798590 (+)
tnfaip2b LOC108263219 coding downstream 1798 17921135 ~ 17926288 (+)
LOC113541463 eif5,LOC107708426,LOC107721218,LOC107582488,LOC107589547 coding downstream 12915 17932252 ~ 17939836 (+)
mark3a mark3,mark3a coding downstream 23994 17943331 ~ 17965306 (+)
trmt61a trmt61a,LOC107582491,LOC107678528,LOC107698149,LOC107589545 coding downstream 52389 17971726 ~ 17982745 (+)
LOC113543388 apopt1 coding downstream 92478 18011815 ~ 18015780 (+)
G48302 NA non-coding upstream 5773 17896322 ~ 17897456 (+)
G48209 gbf1 non-coding upstream 134293 17726419 ~ 17768936 (+)
G48133 NA non-coding upstream 300075 17601874 ~ 17603154 (+)
G48095 NA non-coding upstream 435081 17467948 ~ 17468148 (+)
G47951 NA non-coding upstream 771228 17131462 ~ 17132001 (+)
G48323 NA non-coding downstream 66944 17986281 ~ 17986571 (+)
LOC113541886 NA non-coding downstream 162280 18081617 ~ 18084799 (+)
G48478 NA non-coding downstream 254963 18174300 ~ 18174499 (+)
G48494 NA non-coding downstream 302731 18222068 ~ 18222547 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding downstream 541336 18460673 ~ 18462196 (+)
LOC113541016 ankrd2 other upstream 926200 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 1435879 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 1594331 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 1665687 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 1769227 16124627 ~ 16134002 (+)
dlg5a dlg5 other downstream 257404 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 983101 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 1107631 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 1294870 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 1336727 19256064 ~ 19262088 (+)

Expression


Co-expression Network