rrp12 (rrp12,LOC106529656,LOC103399548,LOC104948777)


Basic Information

Item Value
gene id rrp12
gene name rrp12,LOC106529656,LOC103399548,LOC104948777
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16424145 ~ 16442046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943744.2
GATGACGACATCTAAGGTGCGACGTGGAGGCCGGGGAGAAAGCGTGGCTGAGCACTTGAGGGATCACTTCTCTCTCCAAAATGGTGAAATCGGGTAAACTTCGGTCGGGAACGGCGCAGAAATTAAAGCGATGGAAGAAAGGACACAGCAGCGATTCAAACCCACAGACGAGTCGATATCGACAAGCTGCCAGAAGCCGATTTTTCAGTCGGCCGATAGaAAAAAGTGATCTTACGGTTGATGCCCTGAAACTGCATAATGAGCTTCAGACAGGTTCtctggaaagaaagaaagatggctTGGAGGATGCCATGGAGGAGACGGCAGCTCTCACTGAGCGAACATCAGGCACATTTCTGAGCGGACTGTCTGATTGCTCTAATCTGACTTTTAGAAAAGTTCAGCGATACTGGGAATCCAACTCTGCTGCACACAAAGAGATCTGTGCTGTACTGGCAGCTGTTACAGAAGTGATTCGCTCTCAAGGGGgaaaggagacagagacagaataCTTCGCTGCTTTGATGACGACCCTCGAGGCGGTTGAGAGCAGTGAGTCGCTGGCTGCTGTTGCCTACCTGCTCAACCTGGTAATGAAAAGGGTACCTGCTCCAGTGCTGATAAAGAAATTCTCAGACACAGCAAAGGCCTTCATGGATGTCATGTCAAAACAAGCCACTGCTGACTGTGTGTCTTGCGTTCGTTGGATCTTGTCGTGCCTGGCCACTTTGCTGAGGAAGCAGGATCTCTCCGTGTGGAGTTATCCATCCACCCTGCAGGTGTATCATGGTCTACTCAGCTTCACTGTGCACTCCAAACCAAAGGTGCGTAAAGCAGctcagcagggtgtgtgtgccATCCTGCGTGGCAGTGACTGCATGTTTGGAGATAATGCGCCCAGCCACCATCCCGCTGCCGTTACCACAGCCAAGTACTGCATTAAAGAGATGGAGCAGGCAGGAGGTAGCAAGGAAGATACGACCACGCTGCATGTGCTGGGGCTTCTGAAGGAACTGATTACTACGTTTCCTCTCAGCTCAGTGAAATCTTGCTGTGAGACTCTTCTTCGTGTGATGACCCTGAGTCATGTGCTAGTGACGGCGAGTGCAATGCAGGCTTTCCACAAACTTTTCAGTGGAAAACCAAACCCCTCCTCCATGTCTGCAGAGCTCAATGCCCAGATTATCACGGCTTTGTATGACTATATTCCTAGTGAAAACGACTTGCAGCCACTGCTAGCCTGGCTTGCTGTCATGGAGAAAGCCCATGTCCATTTATCCAGCTTACAGAGCTCTTTGAGTCTGGGTCACCTTCCTCGTCTCTTTTCCGCTGCCATGTCCTGTCTcctttccccacacacacaggtcGTCTCTGCCGCCACACAGACTCTGAAGACCCTGATCAATGAGTGTGTGGCACCGCATATGGCAGAGATCGGGCCTGTTCTACCCAGTGTATCTGCTGGTAATGCGCTTTACATCTGTAAAATGTTCCGtgttgTAGAGGAAGGCTTGTCTTATCGCTTCCATGCTTCGTGGCCTTTTGTGCTGCAGATCCTTGGCTGCTTCTACAGAGCTGCAGGGAAACAGGCTCATCCTGTTATGATGAAGAGTCTGCAGTCTCTGAGTGACCTACGTGCGACGCCACAGTTCCCATTCTGTGGCGAGTTGGATTTGGCAGTAGGGGGCGCAGTGGAGAGCATGGGCCCACAGGTGGTCCTCAGCGCTGTCCCACTCCTCATCACTGGGACTGAtgATGACCTGGAGTTCCCACGCAGCTGGCTTATCCCAGTCATCAGAGATAATGTAAAGAACACCCAGCTGGCATACTTCACCTCTTACTTCCTTCCCCTGGCATCCACACTAAAACAGAGAGcgGATGAACTCGAGAAGACAGGACAGAAGCTGGTGGCAAAAGTGTATCAGACATTACAGTTGCAGATCTGGACGATGCTTCCTGGGTTCTGCACTAAGCCCACTGATGTGGTCAGCTCGTTTAAGGGCATTGCCCGCTCACTGGGTATGGCCATCACTGAGCGCCCTGATCTCCGCATGTGCATCTACCAAGCCCTGCGCACACTCATCCACAAGAGCTGTGAGACAGAGGAGGAGAAGGCAGAAGTGGGCCGCTTCGCTAAGAACTTTTTGCCCATTCTATTTAATGTCCACACACAGCAGCTAGCGCCTGGAGAAAGCGACCCATCCAGGCTGGCTGTGCTCGACACCATCAGAGCTTACCTGACAGTCAGTGATCACAAGaTGGTAGGCTCTTTTCTGCAAAAATCCTTGGAGAGGCTCAGCAGCCCTGACAACTCCGAGTTTACACGGTTTGCTTTGATGGATTTAGTGGTAGTAATGTCTGCATTTGTGGACGAGGAGGCTATGGCACAAACATACGAACAAATCAAACCCTACTTGGAGAGTAAGGAGTCTGGTATTCAGAAGAAAGCGTACCGGGTGTTGGAGGAGATGTGTGGTGGAGAAAGGGAGCCATGTAAGCGTTTTGTCTTGGCCAATCTGGAACAGCTCAAGGTGGTCCTGCTGGACAGTCTGAAGAGCGCATCCTCACCTGCCAAAAGACCCAGACTGAAGTGCCTCAGTCACATTGTGAGGCAGCTGAATGAGGAACACAAGGACTTCATCACTGCACTTCTCCCTGAGGTTATAATTTGCACGAAGGAAGTCTCTGTTGGAGCACGCAAAAATGCCTACTCCCTCTTGGTGGAGATCGGCAATGCCTTTATCCGGTTCTGTGGAAACACCACAGATGCCTTGAATGAGTACTTGGGCCATGTGTACATTGGGCTCACTGGATCAGTCACGATGATTACCTGCACTGTACTGGCCCTTACCAGACTTGTGTTTCAGTACAAAGACTCCATAGACGTATCATCACTGGAGCAGCTGCTGCACAACGTCTGCTTGCTGCTCACATGCAGGACAAGGGAGATTGTCAAGGCCTCTTTAGCCTTCATCAAGGTCATCCTCTTCATCCTGGATGTAAAAGTTCTAGCCAGTCATGTGACCGTTATTATGGAAGGCATTGGCAGTATGAAAGACGACATGAGAAGACACTGCAGGACAAAgctgaaaaacattttcactaaaTTAATCCGCAAGTTTGGCTTCGAGCTGGTCAAGAGCATGCTGCCTGCGGAATTTCACAAAGTGCTGGCGAACATCCGTAAAGTGGAGGCCAGAACGAAGAGACGCAAGCTGGTGAACAAGGCTGAGGAGGAAGGTTCAGACAGCGAGGAAGACACTCCTAAAACCAAAACTGACAGTATTGAGGACATCCTGGCAGAGACGGACTCTGATGACTCGGAGGATGAGAAGCCTAAAAAAGGCCAGAAGAAGCCAGTTAAACAAAAGGCGCAGGCCTGGCTGAAAGAAGGAGTGTCTGATGAACCGCTCAACTTCCTTGATCCTAAAGCAGCACAGAGAGTTCTCTCCACCAACCCTGACTTGAAGAAGACACCCAAGATTGAGCATGGCTTCAAGGTGACATCAGACGGGAGATTGATCATTAAAGATGAcgatgaggaagatgatggaTCTAAAGGTGACAAGGAAATTGATGATATCTTGAAAGAGGCTGGAGTGAAAATGAAAAAGAGCCAGAAGAGGAAAATTGAAGATGATATGGATGATGGCATGGAGATTGAGCCACAACTGAAATATAAAGCTGGAGGCAGTGGGATTCACAGACCTCTGGGAGGAAGAGAGGAGTCAGGTGCTGATTACAAAGCTAAGAAAGGAAAAGGTGACATTAAGAAGAAGGGGAAGCACGACCCATATGCCTACATCCCTCTTAAGAAGGCCCAGCTCAACCGCAGGAAAAAGGCCAAACTGCAGGGCCAGTTTAAGGGCATGGTCAAAGGAGCGAAGAAGGGAGCGCTGTCTGGAAAGAGAATGCAGAAAAATAAGAGGAGAGcctgagatatatatataaacagttgtAATATTTCTAAATGTGGATGGACAGTTTTGTTTATGGACTACCTTAAAGAGGTTATAGTCTGGATCGGATCACTTCATCTTGCTACATCATGCTTTGTGGCCTAGAAATGTGAGGAAGGTTGCAAACGTGTTCCACTAGTGCAACTAAGAAAGTTGTTCCACTACTGAGATTACGACTAACTGTGTTCCTCTCATCAGTGTGTGCTCCTTTCCCACCAAATGGTTGTTTTGAAGGTGGAAATGGGTGGATTACACAAGATGGAATTGTGagataaatgtatttatgtgttGGAAAGTAAACATGGTTAAAACTGAGAAAGATGG

Function

symbol description
rrp12 Predicted to be involved in rRNA processing. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; intestinal bulb primordium; musculature system; and nervous system. Orthologous to human RRP12 (ribosomal RNA processing 12 homolog).

NR:

description
RRP12-like protein

GO: NA

KEGG:

id description
K14794 RRP12; ribosomal RNA-processing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943744.2 True 4283 mRNA 0.49 34 16424145 16442046

Neighbor

gene id symbol gene type direction distance location
prdm8 znf488 coding downstream 26080 16393083 ~ 16398065 (-)
mapk8a mapk8a,LOC108263675,LOC108443371,LOC107707207,LOC107673914 coding downstream 103330 16309429 ~ 16320815 (-)
wdfy4 wdfy4 coding downstream 156260 16222366 ~ 16267885 (-)
LOC113545059 NA coding downstream 218692 16193327 ~ 16205453 (-)
tmem72 tmem72 coding downstream 261948 16079950 ~ 16162197 (-)
pgam1a pgam1,LOC108443463,LOC103038634,LOC107548630,LOC107668811,LOC107673951 coding upstream 17184 16459230 ~ 16462087 (-)
zgc:171482 zgc:171482,zmat4,LOC108262817,LOC108443470,LOC107747266,LOC107665614,LOC107702738 coding upstream 76932 16518978 ~ 16589676 (-)
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040 coding upstream 197723 16639769 ~ 16651375 (-)
crtac1b crtac1,crtac1b,LOC108443504,LOC107702729 coding upstream 260680 16702726 ~ 16724661 (-)
loxl4 loxl4,LOC107665580,LOC107601038,LOC107719235,LOC107702733,LOC102214438 coding upstream 296678 16738724 ~ 16759286 (-)
G47359 NA non-coding downstream 151614 16271270 ~ 16272531 (-)
G47213 NA non-coding downstream 410801 16011570 ~ 16013344 (-)
G47160 NA non-coding downstream 677371 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 690066 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 726731 15697078 ~ 15697414 (-)
G47599 NA non-coding upstream 234004 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 323663 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 346473 16788519 ~ 16788729 (-)
G47882 NA non-coding upstream 566794 17008840 ~ 17009049 (-)
G47940 NA non-coding upstream 648336 17090382 ~ 17090583 (-)
c3h10orf53 NA other downstream 1007662 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 1639392 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 2231902 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2988659 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 3392949 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2650 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 537085 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1029141 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1119358 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1136132 17578178 ~ 17661419 (-)

Expression


Co-expression Network