gpr78a


Basic Information

Item Value
gene id gpr78a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7749636 ~ 7755159 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943765.2
AGTGCTGAATGCGCACTGCTGGAGGGAGAGCACGCGTCCACCGGACACCCATGAGCGCGTGAAGGTCCGCCGTTAAGCAGGAGCTTGAGTCATGGGTTCATGGGACGCGCTGCTGCTTGAGTACCTGCTCTCCTCGGTAGCCCTCGTGTCTCTCTCATCCAACTCGCTCGTGCTGCTGTGTTTCTCCCGAAGCTCAGAGATCCGCGCCCGTGCGCCCGGGCTTTTCATCCTCAACCTGTCACTGTGCAACATCCTGTCCACCGTGCTCAGTGTGCCCACAACGCTGCTCGCGCTCTCCAAGAAGCAGAAACCGTTCGGGGACTCACTTTGCCGAGTAGCGAGCTTCGCGGATACGTTTTTGACTACAAACGCTATGCTGAGCATGGCTGCCCTGGGTGTGGACCGGTGGGCGGCTGTGGCGTTTCCGTTTACCTACTCAAGCAGGGTGAGACACAAGCACGCGGCCCTGACGGTGGCTTACGCGTGGGTGCACTCTCTGGCGTTGTCCGCGGTGCCCGCGCTCTTCTCGTGGACCGACTACAGCCCGGTGTACGCCTCGTGCACAGTGCACCTGCAGCGGATGGAACCCGGGTTCGCCGTCTTTACCGTGGTGTTTCACTGCGCGAGCTTCGCGCTCGCGCTGCTCGTCCTCTGCGTCACGAACCTGAAAGTTCTTCAAGTGGCGCGTTTCCACTGCAAGAGGATTGACGTCATTACCGTCCAGACTCTTTTGGTGCTGGTGGACATTCATCCGAGTGTAAAACAAAGATGCTTACTGGAGCAGAAAAGAAGGAGACGGAGGGCTACCAAGAAAGTCTGCATATTTATTGGCTCTTTTGTGTTCTGCTTCACTCCATATGTCATAACAAGACTGGCAGAACTGATTCCTTCAGTGCAGATCAACCCGCACTGGGGGGTCATCAGTAAATGCCTGGTGTACAGCAAGGCTGCAATGGACCCTTTTGTCTATTCCTTGCTACGACAAGAATACAGAAAGGCACTCATTGGAATGACTAATACACTTACGGGATGCaacttttcctcctcctctgacCACAGCAGTAGCTCATATACAGAAAACGACAGCAATGTTCAGAGGGTGAGCTGAATGCTGAACACTTTGGAGCGAAAGAAGGAAATTGGACCGACACACCCTTTAACCTGCATGTAAATGtcaaatgtaaacataaacaatACCCTGTTTTTTCAGCGTAATCTCCATCTACTGCATCAATAGCATAAGTGGTTATTTATGCTTGTCTAAAGGTTTTGTGGTATTCATTAGTGATCAGGATGAAAGTAAAGCACTGTGTTTATGTACTGGTAATTCAAAGGAAAATTCAGAAGGAAACTGAACGGAAAGAATGTATAAATTCTTTCCCTTGAAAAAGGAGTCCCATCTCTGAAAGAAGAAATGATACACATTTAGAAAAACTttcaaaacagcagctctgacagttctgT

Function

NR:

description
PREDICTED: G-protein coupled receptor 26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943765.2 True 1464 mRNA 0.51 3 7749636 7755159

Neighbor

gene id symbol gene type direction distance location
LOC117596357 NA coding upstream 13727 7716040 ~ 7735909 (+)
LOC113543264 NA coding upstream 37090 7704449 ~ 7712546 (+)
htra3a LOC108263851 coding upstream 55109 7680769 ~ 7694527 (+)
LOC113543305 LOC108262750 coding upstream 71777 7675236 ~ 7677859 (+)
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 328707 7413508 ~ 7420929 (+)
cpz LOC108263841,LOC108434808 coding downstream 2451 7757610 ~ 7771338 (+)
lrpap1 lrpap1,LOC107749950,LOC107551171,LOC107714242,LOC107556528,LOC107674255 coding downstream 314662 8069821 ~ 8080290 (+)
paip2b paip2b,LOC108263850,LOC107551309,LOC107674237,LOC103039606,LOC105904045 coding downstream 686626 8441785 ~ 8445916 (+)
dok1a LOC108262454 coding downstream 693498 8448657 ~ 8452951 (+)
si:ch211-89o9.6 LOC108262781,LOC103368813,LOC106456540 coding downstream 701569 8456728 ~ 8464439 (+)
G42307 NA non-coding upstream 15981 7733442 ~ 7733655 (+)
G42304 NA non-coding upstream 27785 7721649 ~ 7721851 (+)
G42295 NA non-coding upstream 104714 7640935 ~ 7644922 (+)
LOC117596850 NA non-coding upstream 274596 7473370 ~ 7475040 (+)
G42208 NA non-coding upstream 327340 7422091 ~ 7422296 (+)
G42442 NA non-coding downstream 111516 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 154265 7909424 ~ 7909698 (+)
G42522 NA non-coding downstream 420326 8175485 ~ 8176073 (+)
G42531 NA non-coding downstream 434871 8190030 ~ 8190247 (+)
G42498 NA non-coding downstream 441713 8196872 ~ 8197242 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 78226 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 119496 7620545 ~ 7630140 (+)
G42075 NA other upstream 528613 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1520951 5895431 ~ 6228685 (+)
G41047 NA other upstream 2407886 5318534 ~ 5341750 (+)
G42685 NA other downstream 710588 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 714465 8469624 ~ 8469881 (+)
sprn sprn other downstream 2797100 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2839415 10594574 ~ 10608704 (+)
dntt dntt other downstream 3344434 11099593 ~ 11207862 (+)

Expression


Co-expression Network