soul2


Basic Information

Item Value
gene id soul2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14193834 ~ 14197074 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943791.2
GCAGCTTGTCTCCGCCTTCTCTTCTCTCGTCAGCTTTTCTTCCCTCTGGGCGAGGAGGTGTGTTATTGGCAGTCGCAGGTTAGACCACAGAAGCTGTCAGCATTGTCAAACTTCTGGCCATCTGGGGGAATGAAGATCACAATGAATTTACAGTTTTGCCTTCTTTTTatggcttctctctctcttggagGATGTTGGGAAGCACCTTGGTTTTGTCATGGTCATGAATGTCCAGTTTACACTGTTGTAAATACATATGAGGGTTTTGAGGAGCGTCGGTATAATGCCAGTCAGTGGATTACTACAGATATTCCAAGCACCAGAGAGAAAGACATCCAAGATGGCTTTTGGAAACTCTATTACTTCATGCAAGGGAAAAATAAGGAAGGAAAGGAGATTGCCATGACCAGGCCAGTAGTGGTGTCAGTTAGTGAGGCAGTTGAGAACGGGGGTAGGCAAGTGTCGATCTCCTTCTTCATCAACGCAGACATTGTCCTCCCTAAACCTAATGATGAGACCATCAAAAATAAAGACCTACCTGCTGCAACAGTGTACGTTAGGGTATTTGACGGAATTGCGTCTGAGGCTGATGCTATTGAGAATGTGGAGAAGCTGAAGGAGTACTTGCAGGCTGCGGGGAAACCATTTGATAGCACAAGGTTTGAGGCAGCTGGATATGATGCTCCATGGGACCTAATCAACAGACACAATGAAGTGTGGATCTATGCGGTCTGAGTACTAGCTACAGATGTTACTACAGAGTAACAGCTATGAATCACAGATATCACATCACTGTTACAACTAAACAATCTCTCTTTCTGAATGTAGCTTTTATTCCTATGTGCAATAGCTTCTTTAACTTAAAAATCATTTAGGCAAAGACTTGTATAAGTAATATTtgtggatgatttttttttatcactgcTGCCAAAGTGTTTCCTTAAAGTTAAGATGTAAACAAAGGTGTTtgtactctttttttaaatagcacacATTAACTTACATAATGAGCCATATGTTTTTTAACTAATGTGCACACAGTTGTTTAACTACTAAgtcatttatatacattatttatataaattatgtatatattgaGCTGTATAAACAATAAGTTATTTCACTTCAGGTACTTCACATCAGTCATAAAATCAGAGGGTTATGTGTTATAGCCTATACTGAATAAAACTCTTATGAAAGTTCTTATGAAATGATAATTCCTCACTTAGGATTAATTAGTGCCAGAGGTTTCTGCATGGGACCAGCAGATCCTGTAGGGCCTGTTCAGCTTGACAGTCAAAAGTCTGTTCCTACAGTGGCCCAGTCATTAAAGATTTTAAGCTTGTCCTAAAGAAAACCTTTTAAAACccttagtattattattattattatttttgaggATGTATGTTGATACACTGAAGGGAAAAATAAGCAGTTGAATTTTCTGTTGTATTTAAAGCTGTATAATCAATCAATatgcctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggttgtgggttcgagtctcgggtccggcagggattgtaggtggggggagtgaatga

Function

NR:

description
heme-binding protein 2-like

GO:

id name namespace
GO:0060173 limb development biological_process
GO:0035108 limb morphogenesis biological_process
GO:0035113 embryonic appendage morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943791.2 True 1581 mRNA 0.40 5 14193834 14197074

Neighbor

gene id symbol gene type direction distance location
fancl fancl,LOC107585345 coding upstream 137371 14035638 ~ 14056463 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding upstream 560356 13588316 ~ 13633478 (+)
sec23ip sec23ip,LOC107655440 coding upstream 763574 13419948 ~ 13430260 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 789159 13385486 ~ 13404675 (+)
bag3 bag3 coding upstream 810491 13376724 ~ 13383343 (+)
si:dkey-187a12.4 LOC108263835 coding downstream 92308 14289382 ~ 14292863 (+)
rin2 rin2,LOC105893488 coding downstream 99260 14296334 ~ 14328299 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding downstream 134418 14331492 ~ 14341288 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding downstream 149523 14346597 ~ 14351235 (+)
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding downstream 398128 14595202 ~ 14611970 (+)
G46176 NA non-coding upstream 10188 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 10641 14182991 ~ 14183193 (+)
G45875 NA non-coding upstream 297299 13894142 ~ 13896535 (+)
LOC117596881 NA non-coding upstream 303985 13889279 ~ 13889849 (+)
LOC113545747 NA non-coding upstream 548496 13644120 ~ 13645338 (+)
G46217 NA non-coding downstream 89576 14286650 ~ 14288287 (+)
G46337 NA non-coding downstream 190955 14388029 ~ 14388311 (+)
LOC113541837 NA non-coding downstream 420534 14617608 ~ 14626490 (+)
G46638 NA non-coding downstream 768832 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 817049 15014123 ~ 15015181 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 692784 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1159484 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1188511 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 1256532 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 1550530 12639317 ~ 12643304 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 16295 14213369 ~ 14286542 (+)
cgas NA other downstream 164293 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 775494 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1596332 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1873640 16070714 ~ 16075650 (+)

Expression


Co-expression Network