spock2 (spock2,LOC108262742,LOC108443083,LOC107668819,LOC107673954)


Basic Information

Item Value
gene id spock2
gene name spock2,LOC108262742,LOC108443083,LOC107668819,LOC107673954
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15746453 ~ 15773703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943827.2
tgtaaccAGCATCCTGTAATCGGGTCACATTTCAGTGAAGGTTCAGCATCCATCCCTTGCTGTTAGGAGAAACAGATCCTCTGACTCGGTGTTCTCTTGCTGAACCCTGGTTAACAGGAATCATGGTGCTCTTGTGTCTTGTGTCTCTTCTCCTCCCGATGCTGATGCTCTCGGGGTCTCCGGTTCAGGCGGATGGAAAGCGAGGTGGCAAAGATGCGGCTGAGAAAAGCGCTAATTTCATGGAAGACGAGCAGTGGCTGGCCACCATTTCCCAGTACAGTCGCAAGATCAAGAACTGGAACCGATTCCGAGATGAAGTAGAGGATGATTACATCAGATCATGGGATGAAAATCAAGGCTCAAATGAAAATGTAGACACCACTAAAGACCCCTGCCAGAAGGTGAAGTGTAGCCCACACAAGGTGTGTGTTGCCCAGGGCTACCAGCGTGCTGTGTGTGTCAACCGCAAGAAGCTGGAGTACAGGCTGAAGCATCCAGTGGTGGGTCAGCAGGAGAACAACTGCAAACCGTGCCCTGTGTCCACCTCTGGGCCTGTGTGTGGTTCTGATGGACATAACTATGCTTCTCAGTGTAAGCTGCAGCATCAGGCCTGTCTCACAGGGAAAGAGCTGAGTGTGAAGTGCACTGGTCCCTGCCCATGTTCCACTTCAGCTGTGCCGAGTACAATGACAGACAGTACACACGACAGTTGTACAGGCCAGGACCTAGCAGATTTGGGTGATCGTCTGCGGGACTGGTTCCAGCTGCTTCAAGGCAATGCCAAGCAGAACAACACACGCAAGCCTACTGCAGCCACCTCAGCATCAATTTTGGACCGCACTCTAGTGGCAACCTGTAAGGACTCCATTGGATGGATGTTTTCAAAGTTGGACACTAATAATGACCTGTATCTGGACCAGGCTGAGCTGGCTGCTATTAATCTGGACAAGTATGAAGTATGTATCCGGCCCTTCTTCAATTCCTGTGATTCCTACCGTGATGGCAAAGTCTCCACAGCTGAGTGGTGCCTCTGCTTCTGGAGAGAGAAGCCTCCCTGCCTGGCTGAGTTAGAGAGGATCCAAATGCAGGAAGGAGCCAAAAAGAAGCCAGGTACATATATCCCCAGCTGTGATGAGGATGGTTATTATAGGAAGCTGCAATGTGACCAAAGCAAGGGGGAGTGCTGGTGTGTAGACCAGCATGGAGAAGAGTTAATGGGCTCCAGAATCCATGGCAACACTGACTGTGATGAAGTGGCTGGCTACTCAGGGGATTTTGGCAGTGGCGTGGGAtgggaggacgaggaggagaaagaagcaGAGGACACCGGAGAAGAAgctgaagaagaggaggaggagattgGGGAAATGGATGATGGTGGCTATATCTGGTAGACCAAAATGAAATGGTTGCCTGGTCAAGATAGCTTTACTTTGACCACTGATTCAGAGGCAGCTCCATCTCTTGCTGACACAAAATAGTGGAAACTGGAGGGTTGGACATCTCTATACTGAACTCCAAACAGCAGTGGccgggggtgggggtgggggttgcACTGGGGGTTTGAGTTGTGGTAACTGTAGTGAAATTATGGGTATGggaaagagtttaaaaaatgatcttatatatacttgtgaaaaattttcttttgttgtatGTTCAAGATTGTGCTCTTCTGATAAATTCAATAGCATCAGCAATCTTAAGCTGGAATCTAGGTAATTGATAACTGGACATTTTCTCTTTAGATGAACTGGAGCTTTGCAAATGCTACACAGCGTGCTTCATCTCATCATGTGACGCGTTCTTCTTATGCAAGAAGCATAAACTAAATGCACATATATATTTGGAAACGTTACCTTTTAGTCTCAGACTTTTAGGGTAGCATTTAGATTTGAACTAAGACAGGCAGAACTCAagtgaaaatgtacaaatgacTGAATTTCTTGACCTTTGGCGGGTACATCATTTACAGGTTTAATTTTAACCCATATAGTTTCACAGGCTAGAACTCAGCAAGAATAAATTCAAAAGCCAAAACTGCTCTGATAACTAGCCACAGCTCAGTTATGGATACATTATCTGGCTATCAAGTGTTTCTGTGTCATTTCAAGATACAGTATGTCCTGTCCTTGTCTGTAAATTTGTGCAACATCATAATGCATTTCTTGTTGGTCAAAATATCAAATGTAAGGCCAAGCTTTGCATATTCCTTAACATACTCTGCAGATCGCTCCTTCTACACAGTTACTCAAAAGAAGGCATTTTATTCCCTATATATCCCCTGAAAGTGGATATAGTGAAGCACTGTGTTTCCTTGTATACCATGTGTTGACACTGAACATCTTGTGACACCCAGCAACAGTTTTGTAAAAACATGGTTTCCACTTTCAGATTTTTATCATAGAATCTGCTCAAAAAGTAGGTTAGGGAAAAATGCTTTATCTCTGAGGTAACAGTATGTCACAGTAAATATATGTATGAATGCCAGTATGGAGAATAAGATACGCAACCTGATGACAGCCAGGGGGACCTGTCTGTATTTCTATTTGTCTGTCGACTAATCAGATCCTCTCATCGACCATGGTGAAACAGGAGTCTATTGTAATGTTACTAGGTGTACATATAGTTTTGGTTTACACTGAGGAAAACTACATTCATGTACCAAACGCATTAAGCCATTCTTGGTATAAACGTTTCTGTCACCAGGTAAGACTTGACTTACAAGGTTGTGTATGGTATCAGGTCATCTAACAGCGAGACATCAGACGCCAGTGATTTCATACACATAAAAACAGGTCTTTTGGCGTAAACACTGTGCAATTTGTATCATACACTGAAACATTCATAACATACTCACTCCCTCTTGAGAGCACAAGACTGTTTGAAAATGCTTTTCTATGCTCAGCACAAGACGCACAGGCATTGTGCATAATCCATGCAGAtcttaaatgtgtgtgaatcaCAGATATTATCTGGTATGGTAATACATTCAGACATATCCAGGCTGTGAGCTCTAAGCAGGATTGGGAGTGTGATGTAATAGGATGTAATATGCTCGTCTTCTCTTTAAATCAACAACAGATAACAACTAGTTTTGTGTAAGAATGAATAATTGGATTTTTTCAGTTGGATTAACGTTTAATCCGTGTCATTAGAGTGCCCGTCACTCCAGTCTGATTGTGAGGAgataactgtttttgttttcctcatGTGTATGAGGGCATCACCTCTGAGTATGGATTAACTTGCATATGATCGTATTATCATATAAATTTATCATTGTAAATAGTTGGAGTATACAGACACAGTGTATTTGCCCTGGCAGTTGcattatatttgcatttagtTGCATGTTTCTTTGTCCAAATGTATCATCTTTTTGGCTCAGTATAATTACGATTAAAGGCATTGGGCCCAAATATTGTGTTCTCTTG
>XM_026943836.2
tgtaaccAGCATCCTGTAATCGGGTCACATTTCAGTGAAGGTTCAGCATCCATCCCTTGCTGTTAGGAGAAACAGATCCTCTGACTCGGTGTTCTCTTGCTGAACCCTGGTTAACAGGAATCATGGTGCTCTTGTGTCTTGTGTCTCTTCTCCTCCCGATGCTGATGCTCTCGGGGTCTCCGGTTCAGGCGGATGGAAAGCGAGGTGGCAAAGATGCGGCTGAGAAAAGCGCTAATTTCATGGAAGACGAGCAGTGGCTGGCCACCATTTCCCAGTACAGTCGCAAGATCAAGAACTGGAACCGATTCCGAGATGATGATTACATCAGATCATGGGATGAAAATCAAGGCTCAAATGAAAATGTAGACACCACTAAAGACCCCTGCCAGAAGGTGAAGTGTAGCCCACACAAGGTGTGTGTTGCCCAGGGCTACCAGCGTGCTGTGTGTGTCAACCGCAAGAAGCTGGAGTACAGGCTGAAGCATCCAGTGGTGGGTCAGCAGGAGAACAACTGCAAACCGTGCCCTGTGTCCACCTCTGGGCCTGTGTGTGGTTCTGATGGACATAACTATGCTTCTCAGTGTAAGCTGCAGCATCAGGCCTGTCTCACAGGGAAAGAGCTGAGTGTGAAGTGCACTGGTCCCTGCCCATGTTCCACTTCAGCTGTGCCGAGTACAATGACAGACAGTACACACGACAGTTGTACAGGCCAGGACCTAGCAGATTTGGGTGATCGTCTGCGGGACTGGTTCCAGCTGCTTCAAGGCAATGCCAAGCAGAACAACACACGCAAGCCTACTGCAGCCACCTCAGCATCAATTTTGGACCGCACTCTAGTGGCAACCTGTAAGGACTCCATTGGATGGATGTTTTCAAAGTTGGACACTAATAATGACCTGTATCTGGACCAGGCTGAGCTGGCTGCTATTAATCTGGACAAGTATGAAGTATGTATCCGGCCCTTCTTCAATTCCTGTGATTCCTACCGTGATGGCAAAGTCTCCACAGCTGAGTGGTGCCTCTGCTTCTGGAGAGAGAAGCCTCCCTGCCTGGCTGAGTTAGAGAGGATCCAAATGCAGGAAGGAGCCAAAAAGAAGCCAGGTACATATATCCCCAGCTGTGATGAGGATGGTTATTATAGGAAGCTGCAATGTGACCAAAGCAAGGGGGAGTGCTGGTGTGTAGACCAGCATGGAGAAGAGTTAATGGGCTCCAGAATCCATGGCAACACTGACTGTGATGAAGTGGCTGGCTACTCAGGGGATTTTGGCAGTGGCGTGGGAtgggaggacgaggaggagaaagaagcaGAGGACACCGGAGAAGAAgctgaagaagaggaggaggagattgGGGAAATGGATGATGGTGGCTATATCTGGTAGACCAAAATGAAATGGTTGCCTGGTCAAGATAGCTTTACTTTGACCACTGATTCAGAGGCAGCTCCATCTCTTGCTGACACAAAATAGTGGAAACTGGAGGGTTGGACATCTCTATACTGAACTCCAAACAGCAGTGGccgggggtgggggtgggggttgcACTGGGGGTTTGAGTTGTGGTAACTGTAGTGAAATTATGGGTATGggaaagagtttaaaaaatgatcttatatatacttgtgaaaaattttcttttgttgtatGTTCAAGATTGTGCTCTTCTGATAAATTCAATAGCATCAGCAATCTTAAGCTGGAATCTAGGTAATTGATAACTGGACATTTTCTCTTTAGATGAACTGGAGCTTTGCAAATGCTACACAGCGTGCTTCATCTCATCATGTGACGCGTTCTTCTTATGCAAGAAGCATAAACTAAATGCACATATATATTTGGAAACGTTACCTTTTAGTCTCAGACTTTTAGGGTAGCATTTAGATTTGAACTAAGACAGGCAGAACTCAagtgaaaatgtacaaatgacTGAATTTCTTGACCTTTGGCGGGTACATCATTTACAGGTTTAATTTTAACCCATATAGTTTCACAGGCTAGAACTCAGCAAGAATAAATTCAAAAGCCAAAACTGCTCTGATAACTAGCCACAGCTCAGTTATGGATACATTATCTGGCTATCAAGTGTTTCTGTGTCATTTCAAGATACAGTATGTCCTGTCCTTGTCTGTAAATTTGTGCAACATCATAATGCATTTCTTGTTGGTCAAAATATCAAATGTAAGGCCAAGCTTTGCATATTCCTTAACATACTCTGCAGATCGCTCCTTCTACACAGTTACTCAAAAGAAGGCATTTTATTCCCTATATATCCCCTGAAAGTGGATATAGTGAAGCACTGTGTTTCCTTGTATACCATGTGTTGACACTGAACATCTTGTGACACCCAGCAACAGTTTTGTAAAAACATGGTTTCCACTTTCAGATTTTTATCATAGAATCTGCTCAAAAAGTAGGTTAGGGAAAAATGCTTTATCTCTGAGGTAACAGTATGTCACAGTAAATATATGTATGAATGCCAGTATGGAGAATAAGATACGCAACCTGATGACAGCCAGGGGGACCTGTCTGTATTTCTATTTGTCTGTCGACTAATCAGATCCTCTCATCGACCATGGTGAAACAGGAGTCTATTGTAATGTTACTAGGTGTACATATAGTTTTGGTTTACACTGAGGAAAACTACATTCATGTACCAAACGCATTAAGCCATTCTTGGTATAAACGTTTCTGTCACCAGGTAAGACTTGACTTACAAGGTTGTGTATGGTATCAGGTCATCTAACAGCGAGACATCAGACGCCAGTGATTTCATACACATAAAAACAGGTCTTTTGGCGTAAACACTGTGCAATTTGTATCATACACTGAAACATTCATAACATACTCACTCCCTCTTGAGAGCACAAGACTGTTTGAAAATGCTTTTCTATGCTCAGCACAAGACGCACAGGCATTGTGCATAATCCATGCAGAtcttaaatgtgtgtgaatcaCAGATATTATCTGGTATGGTAATACATTCAGACATATCCAGGCTGTGAGCTCTAAGCAGGATTGGGAGTGTGATGTAATAGGATGTAATATGCTCGTCTTCTCTTTAAATCAACAACAGATAACAACTAGTTTTGTGTAAGAATGAATAATTGGATTTTTTCAGTTGGATTAACGTTTAATCCGTGTCATTAGAGTGCCCGTCACTCCAGTCTGATTGTGAGGAgataactgtttttgttttcctcatGTGTATGAGGGCATCACCTCTGAGTATGGATTAACTTGCATATGATCGTATTATCATATAAATTTATCATTGTAAATAGTTGGAGTATACAGACACAGTGTATTTGCCCTGGCAGTTGcattatatttgcatttagtTGCATGTTTCTTTGTCCAAATGTATCATCTTTTTGGCTCAGTATAATTACGATTAAAGGCATTGGGCCCAAATATTGTGTTCTCTTG

Function

symbol description
spock2 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Is expressed in brain and peripheral olfactory organ. Orthologous to human SPOCK2 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2).

NR:

description
PREDICTED: testican-2-like isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08136 SPOCK; testican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943827.2 True 3437 mRNA 0.43 11 15746453 15773703
XM_026943836.2 False 3428 mRNA 0.43 10 15746453 15773703

Neighbor

gene id symbol gene type direction distance location
dnajb12a LOC108263659,LOC108443064 coding upstream 15752 15722881 ~ 15730701 (+)
cuedc2 cuedc2 coding upstream 69004 15673435 ~ 15677449 (+)
pax2a pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 coding upstream 120607 15590118 ~ 15625846 (+)
chst3a LOC108262760,LOC108442959 coding upstream 258930 15480527 ~ 15487523 (+)
lrit1a LOC108262901,LOC108442250 coding upstream 295573 15447423 ~ 15450880 (+)
pald1b LOC108263458,LOC108443100 coding downstream 25525 15799228 ~ 15812772 (+)
rps24 rps24 coding downstream 47390 15821093 ~ 15827467 (+)
zmiz1a zmiz1,LOC108443181 coding downstream 99614 15873317 ~ 15986353 (+)
ppifa ppifa,LOC108263515,LOC108442288,LOC107588732,LOC107668776,LOC107564349,LOC107673899,LOC105909881 coding downstream 213736 15987439 ~ 15991054 (+)
si:ch73-6k14.2 c3h10orf10 coding downstream 282681 16056384 ~ 16057258 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding upstream 30929 15711137 ~ 15715524 (+)
G46849 NA non-coding upstream 272583 15473201 ~ 15473870 (+)
G46833 NA non-coding upstream 326811 15419029 ~ 15419642 (+)
G46765 hps6 non-coding upstream 662143 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 731272 15014123 ~ 15015181 (+)
G47071 NA non-coding downstream 119878 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 259601 16033304 ~ 16035339 (+)
G47224 NA non-coding downstream 330133 16103836 ~ 16104050 (+)
G47265 c3h10orf71 non-coding downstream 418992 16192695 ~ 16203524 (+)
G47406 znf488,prdm8,LOC107757101,LOC107708270,LOC107673884,LOC107548615,LOC107588729,LOC107668783 non-coding downstream 621302 16395005 ~ 16397038 (+)
borcs7 borcs7 other upstream 772385 14972568 ~ 14974068 (+)
cgas NA other upstream 1378353 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 1459911 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 2245403 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2712103 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 19703 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 297011 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 350924 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 460811 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 511419 16285122 ~ 16308898 (+)

Expression


Co-expression Network