atoh7 (atoh7)


Basic Information

Item Value
gene id atoh7
gene name atoh7
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13353569 ~ 13356432 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943871.2
CACAATTACTTATCTGGTACAAAATATCCAGACAGCATCAGCTTATATGGCTTGACCTTTCATCACTGGCTCATCTGGGGCATGAATTATTGAGAAATGTGGGGTGAATTTATGTTCTGGAAAATGAAGTATAGCTGGCGAAATCCAACCATGTCCTTCTTGGAAGACAAGAAAATTATATTCCATAGATGCTCAGGAATCAATTCAAGTTAATTAAGCAGTTCTCACTCATTGACCCCCAGTGAGTTAAACTGTCCTGGCCAGATGGACCGTAGTATCGCATTTGGACATACAACAGAAAAGATGAAGCCTTGCACACCAACCTGTGTGGATTTGAGTTCTGAGTGTGATCCCAGAGACCTAGAGAAGTTTCAGAGTGTGGTACGGAAGAGGGTTGCAGCCAACGCCcgagagaggaagaggatgcAGGGCTTGAATACAGCTTTCGACCAACTGCGCAAAGTGGTTCCTCAGTGGGGTCAGGACAAGAAACTTTCAAAGTATGAAACCTTGCAGATGGCTCTGAGCTACATCATGGCCCTCAACCGCATCCTGAGTGATTCTAGTAGAAACAGCACTCCTCACAGGCAATGGTTGGACCTGCAGTATGACAGCTTGCAGTCAGAGAGCTACCCCTGCATCGTGAGATACAGCTCACCCACTGAAAACGAGCACATGTACACCTCCTTCTCCTGCCATTACGAGGATTTCCAAGTCCTGACTTAGAGGATTTCCAAGTCCGTGCTGGAGTGTTAACTTCTATCTCCTATTCTGTATATACAGGACACAGTAAATACATTtgtattacaattatttttatgtattagactatattttatattgattaCCTTTGAATAGCTTGGTACAAAATTATTCTAGCCATAtagcatttatttctgaaagtaatttcaataaaaaaatgctttattatggttattaattaattgtgtaGTGAGTAGTCTTGGTTCTCTCAGCCAAACACTCAAAACTTGTATTGCTTTGTATCAAATCATTCAATTAAAGTGTGGAAGCTTAGTTAAAGCTTAGTGTACAATAATATCTGTAAATGtcttcttaatttttttgttctttttgtaaGTTTGGGTTTATTGTAAACTGTGGCTTGTCAGCAAACAGCAGACAGTTTAGAGCATGTTTATTTAGCCAAATATACAGTCTAGCAGTAGCAACTTTCATTGTATATCAATTTCTAGTACATCGGTGTGAGAATAAACTTAATAAATTCAGCTCCTTAtgttttttgcttattttagaCATGGATCAGCACACAATAAATTGTTCATGACAACAA
>XM_026943879.2
CACAATTACTTATCTGGTACAAAATATCCAGACAGCATCAGCTTATATGGCTTGACCTTTCATCACTGGCTCATCTGGGGCATGAATTATTGAGAAATGTGGGGTGAATTTATGTTCTGGAAAATGAAGTATAGCTGGCGAAATCCAACCATGTCCTTCTTGGAAGACAAGAAAATTATATTCCATAGATGCTCAGGAATCAATTCAAGTTAATTAAGCAGTTCTCACTCATTGACCCCCAGTGAGTTAAACTGTCCTGGCCAGATGGGAAAAACAGAGCTGGGCTTGGTGCTCACACAATAACCTGGACCTGTGTAACAGAACAAGACCACAGCAagaactgatttttaaaatatctctTAACAAATAGATGTTTATCTCCATCACTGAAGGACCGTAGTATCGCATTTGGACATACAACAGAAAAGATGAAGCCTTGCACACCAACCTGTGTGGATTTGAGTTCTGAGTGTGATCCCAGAGACCTAGAGAAGTTTCAGAGTGTGGTACGGAAGAGGGTTGCAGCCAACGCCcgagagaggaagaggatgcAGGGCTTGAATACAGCTTTCGACCAACTGCGCAAAGTGGTTCCTCAGTGGGGTCAGGACAAGAAACTTTCAAAGTATGAAACCTTGCAGATGGCTCTGAGCTACATCATGGCCCTCAACCGCATCCTGAGTGATTCTAGTAGAAACAGCACTCCTCACAGGCAATGGTTGGACCTGCAGTATGACAGCTTGCAGTCAGAGAGCTACCCCTGCATCGTGAGATACAGCTCACCCACTGAAAACGAGCACATGTACACCTCCTTCTCCTGCCATTACGAGGATTTCCAAGTCCTGACTTAGAGGATTTCCAAGTCCGTGCTGGAGTGTTAACTTCTATCTCCTATTCTGTATATACAGGACACAGTAAATACATTtgtattacaattatttttatgtattagactatattttatattgattaCCTTTGAATAGCTTGGTACAAAATTATTCTAGCCATAtagcatttatttctgaaagtaatttcaataaaaaaatgctttattatggttattaattaattgtgtaGTGAGTAGTCTTGGTTCTCTCAGCCAAACACTCAAAACTTGTATTGCTTTGTATCAAATCATTCAATTAAAGTGTGGAAGCTTAGTTAAAGCTTAGTGTACAATAATATCTGTAAATGtcttcttaatttttttgttctttttgtaaGTTTGGGTTTATTGTAAACTGTGGCTTGTCAGCAAACAGCAGACAGTTTAGAGCATGTTTATTTAGCCAAATATACAGTCTAGCAGTAGCAACTTTCATTGTATATCAATTTCTAGTACATCGGTGTGAGAATAAACTTAATAAATTCAGCTCCTTAtgttttttgcttattttagaCATGGATCAGCACACAATAAATTGTTCATGACAACAA
>XM_026943888.2
CACAATTACTTATCTGGTACAAAATATCCAGACAGCATCAGCTTATATGGCTTGACCTTTCATCACTGGCTCATCTGGGGCATGAATTATTGAGAAATGTGGGGTGAATTTATGTTCTGGAAAATGAAGTATAGCTGGCGAAATCCAACCATGTCCTTCTTGGAAGACAAGAAAATTATATTCCATAGATGCTCAGGAATCAATTCAAGTTAATTAAGCAGTTCTCACTCATTGACCCCCAGTGAGTTAAACTGTCCTGGCCAGATGATGTTTATCTCCATCACTGAAGGACCGTAGTATCGCATTTGGACATACAACAGAAAAGATGAAGCCTTGCACACCAACCTGTGTGGATTTGAGTTCTGAGTGTGATCCCAGAGACCTAGAGAAGTTTCAGAGTGTGGTACGGAAGAGGGTTGCAGCCAACGCCcgagagaggaagaggatgcAGGGCTTGAATACAGCTTTCGACCAACTGCGCAAAGTGGTTCCTCAGTGGGGTCAGGACAAGAAACTTTCAAAGTATGAAACCTTGCAGATGGCTCTGAGCTACATCATGGCCCTCAACCGCATCCTGAGTGATTCTAGTAGAAACAGCACTCCTCACAGGCAATGGTTGGACCTGCAGTATGACAGCTTGCAGTCAGAGAGCTACCCCTGCATCGTGAGATACAGCTCACCCACTGAAAACGAGCACATGTACACCTCCTTCTCCTGCCATTACGAGGATTTCCAAGTCCTGACTTAGAGGATTTCCAAGTCCGTGCTGGAGTGTTAACTTCTATCTCCTATTCTGTATATACAGGACACAGTAAATACATTtgtattacaattatttttatgtattagactatattttatattgattaCCTTTGAATAGCTTGGTACAAAATTATTCTAGCCATAtagcatttatttctgaaagtaatttcaataaaaaaatgctttattatggttattaattaattgtgtaGTGAGTAGTCTTGGTTCTCTCAGCCAAACACTCAAAACTTGTATTGCTTTGTATCAAATCATTCAATTAAAGTGTGGAAGCTTAGTTAAAGCTTAGTGTACAATAATATCTGTAAATGtcttcttaatttttttgttctttttgtaaGTTTGGGTTTATTGTAAACTGTGGCTTGTCAGCAAACAGCAGACAGTTTAGAGCATGTTTATTTAGCCAAATATACAGTCTAGCAGTAGCAACTTTCATTGTATATCAATTTCTAGTACATCGGTGTGAGAATAAACTTAATAAATTCAGCTCCTTAtgttttttgcttattttagaCATGGATCAGCACACAATAAATTGTTCATGACAACAA

Function

symbol description
atoh7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including positive regulation of neurogenesis; retina layer formation; and swimming behavior. Predicted to be active in nucleus. Is expressed in eye and immature eye. Human ortholog(s) of this gene implicated in persistent hyperplastic primary vitreous. Orthologous to human ATOH7 (atonal bHLH transcription factor 7).

NR:

description
PREDICTED: protein atonal homolog 7

GO: NA

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943871.2 False 1312 mRNA 0.39 3 13353569 13356432
XM_026943879.2 True 1437 mRNA 0.39 3 13353569 13356432
XM_026943888.2 False 1334 mRNA 0.39 3 13353569 13356432

Neighbor

gene id symbol gene type direction distance location
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding upstream 7463 13339258 ~ 13346106 (+)
LOC113543782 LOC108263125 coding upstream 15235 13333341 ~ 13338334 (+)
calhm1 LOC108263121,LOC108263394 coding upstream 20408 13329914 ~ 13333161 (+)
calhm3 calhm3,LOC108263123,LOC107578949,LOC102205420,LOC102305682 coding upstream 24076 13325893 ~ 13329493 (+)
LOC113543512 gsto1,LOC100304822 coding upstream 35944 13314595 ~ 13317625 (+)
pkd2l1 LOC108263119 coding downstream 2644 13359076 ~ 13366067 (+)
bag3 bag3 coding downstream 20292 13376724 ~ 13383343 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding downstream 29054 13385486 ~ 13404675 (+)
sec23ip sec23ip,LOC107655440 coding downstream 63516 13419948 ~ 13430260 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding downstream 231884 13588316 ~ 13633478 (+)
G45594 NA non-coding upstream 40348 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 41489 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 257688 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 301040 13052240 ~ 13052529 (+)
G45459 NA non-coding upstream 335969 13011946 ~ 13017600 (+)
G45640 NA non-coding downstream 19367 13375799 ~ 13375999 (+)
G45712 NA non-coding downstream 165407 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 166474 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 287688 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 532847 13889279 ~ 13889849 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 319219 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 348246 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 416267 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 710265 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 717163 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 141616 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 856937 14213369 ~ 14286542 (+)
cgas NA other downstream 1004935 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1616136 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2436974 15793406 ~ 15797204 (+)

Expression


Co-expression Network