pcnx2 (pcnx2,LOC108262757)


Basic Information

Item Value
gene id pcnx2
gene name pcnx2,LOC108262757
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9350060 ~ 9379729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944059.2
TTCATTGAGGGCAATAGAAAGGAACATCACATAACAAACACTCCtgatctccacacacacacacacacacacacacacggtcctTTAATGATGGCACACCAACAAGACGACGAGAGGACGAGAAGAAAAGCCGACGCATTTCGAGGTCCTGTATTCTAAGTGGAACCATCCGCAACATGTAGGGTTCTGATTTCCCGGGGGAAGCAGTGGAGGAGATGGCGATGGTGAGGGCGATGTGGCTCTAGTCTCTGCCTCAGTGAGGATGGGCTCGCAGGCGCTGCAGACGCTCCGGCAGGGGGTGTGGGCTTCCCTGACCGGCGGATGGTACCACGACCCCGAGCAGAATAAATTCAACAACTCCTGCCATCTTTATCTGTGGCTCTTCCTGCTCATGTTGCCTCTGTCCCTGCATCTGGCTCTTCCACCCACCAGTCTGGCCCTCAGTATTTACTGTACCTCAGTGACTGTTTTCTTCATCCTCATTAAGATGGTGAACTATCGCCTTCACCTAATGTTTGATGAAGGTGAAATTGTGCCCCGAAACAGTGTGTCTGACATCAGCAAAGGtgcagaaaaaaagagtaatGCCTCAGACACCTGTCGTCCAGCCAGCTTGAGgaaGAGCAGCACAGTACCTGATAGTGTTGCCATGACAGTATTGACTAGAAACAGGGCAAGTCCAGTAATCCAAGTCACAGTGAAACAGACTGAAACAGACCCGGGACTGATTGGGgaGTGCTCAAAAAAGGACTCAAAACACATAGATGGCCAAGATGACACATCCTCTCAGAAGACGGGTAGGGAAAGAACCGAAGCTGAGGAGAAACTGACCCCTGAAGATGCATTTAGTCCCAATACTGACCAATCAGCCCCACTCTTGCAATCAGAGCAGAGACAGCCAACCCAAGGggacacagctgatgaaggcCTGCCCCCTTCTGCCAGCAGTGAAGAGGAGAGGATCCAAGAAGAAGCTGAGAAAGAGACACCACCACTTCCAGAGCCCGTCAACACTGGCAGCAGGTCCTCGGCGGCTAAAGAGgctgaggaggaagagaagcCTGAGGAGACCTACTGCTCGGATGAAATCTCCGTGGTACTGGTTGACAATTCTGGTTTATCGACCCGCCTGGACGAGAATGATACTGTGAAGATCGTTATCACAATGAGCTGTGACCCTCAGACAGCAGCGGAGCTGGAGGAGTCAGTCAGACTCAGCCTCCTGGAGTCGGCTCAATCCCGCCTAGCTCAGCAAGACCAGATGGGGGATGCTCCTGTCAAAATTCCAGTCATTACCTTTGATTCACCtcgagaggaagaagaaagctGTGTCAAAGATAATAAAGAAGGGAGGCTAAATCCTAATGAATTGTCTCCTCAGGAACAGGCTGTGGCTCATGAAAGTCAAGACCCAAATGAGCCAGTTGGGTCCAGTTCTGCCCAACAGGAAGTATTGTCCAATGAACATGAGGCAGAGAATCCCAGTCCGAACACTAATAACAGCTCCTCGGGCATTGATGTGCGCTCCCATCCAGATGAGAGCGAGCACACTGAGCTGAAGTCAGACACTGATGGATTCTTGCAAATCCCTTCTGGCTTTGGGAGgtgtggtggaggaggaaggcTGCATGCAAGAGGACTTAGCATTGACAGTGGAAGGGACGCTGTCCTGATTGGCCACCGAGCCAAATCCAAGCTGCAGACCATGACCTCATCTAAGTCGGACTTAGAGGACAAAGAGGGCCAGTTGCCCAATGAGTCCAACTTTGTGGAGTTTGTTTCAATGCTGGAGTCCATCAACAGTACCAGAAGTGGGGGAGGGAAGCAGACAGAGGATGAGCAGAAGGAGGAGCAGAAAATTAAAACAGATGAGGAGACTACAATGCTGGTGAAGAACTTAGAAAGCACAGATGAGGCTGGACAGCAAGGTCCTCCAAACCCTCCGAACAGTCTGGCTACGGACACACTGCACAGCCTTCCAGAGAAACGGATTCCCATCGTCTCTCCTGACAGTCCTCAGACAGATAAGGAGAGGGATCCAGACTATGACTCTCTGCCCTCTCAGACGTCTCAATCAGAGAGCTCAATGCTGCAGGTCATCTGTAGACCAGAAGCAACATCTAAAGAGGAGGCTTATACCTTCCACACAGTGCACAGAGACAGACCTCGAAAGCTGTACAATGAAAGGGCGTTAAATTTACCTCTTGGAGCTGAACTGATCACGGGGAACGTATGTGATCTCCTTTCCACGTCCTCCAACTCGGAGGGCCAGGATGGGTTAGTGGGTGGGCATCCCGATTGTCCGTTTCAGCGCCGCATGATTCCAGCTCACCGGCTTCGGCCCAGGAGAACACACCCCGAGATCTTTCAGGAGGAGGATTCTCTTGACGACTCCTCTGACACGACTACTGAGGAGAAGCCATCTCGGAAGCTCTACTATAAGATGAAAATTTTTCCTGGGAAATGGATCAACATCTTGTACGATCGGCTGACCTTAATGGCGCTGCTGGACAGGAATCAGGACTGGAAGGAGAACATGGCTGCTGTGTTTTTAGCATTCCTGGTTGCTTTTCTGGGCTTTGTGCTCCTGAACCATGGTTGCTTTAAGGACTTTTGGGTTTTCCAGTTTTGTCTGGTCATGGCCAGCTGTCAGTACTCCTTATTAAAGAGTGTCCAGCCAGACGCAGCATCACCTACTCATGGACATAATCGAATCATTGCCTACAGTCGAGCTGCATATTTCTGCATGTTCTGTGGCCTTATTTGGATTCTGGAGTTGAAGCTAAAAAGATCAGACCTTCCTGTGTTCACCTTATACGGCATTACGATTGTAATGTCGGACATGCTCCTATTTGTACAAGATATTTTAATTGGATTTACATACTGCTTTCCAATAACCTTCCTTCTTGGCCTCTTCCCACAAATCAATACATTTGTTATTTACTTTCTCGAGCAAATTGATATACACTTTTTTGGTGGAACAGCTGCAACTGGACTGTATTCAGCCTTCTACTGTATAGGGAGGAGTCTGTTGGTGTTAACATTACTGTATGGATTCTGTCTTGGTGCGCTGAAGGAACCTTGGAACGAGCAGCACATCCCAGCCCTGTTCTCTGGGTTTTGTGCTCTGCTGGTAGCCCTGTCTTATCATCTCAGTCGACAAAGCAGTGACCCGTCTGTACTATTCACTTTGTTTAAGTCCATATTCATGCCAGCATTGGGGGAAGACGAGGTGGAGGAAGAGCCCTCTGAGAATGAAGATCCTCTTCCAAAGAAGCTCCAGAGCTCAGTGAGAGAGATACTGATCTCTGATCTGCTTGTATGCACCGTCGCTTCAGTTTTGACTTTTGCTGTTACTGCCAGTACTGTCTTCCTGTCTTTAAGGccCTTTGTCACCATAGTGCTGTATGCCCTGGCAGCAACCGTGGGCTTCGTCACCCACTATCTCATCCCTCAGTTACGCAAACATCATCCCTGGTTGTGGCTCTCACAGCCAGTGCTTAAGAGTAAAGAGTACTCCCAGTTTGAACCCACAGAGGATGCTCAGCTGATGTGGTTCGAGCGGCTCTATGTAGGACTCTTGAGCTTTGAGAAGTATGTGGTGTACCCTGCCATTGTGCTCAGTGCCCTCACTAATGATGGCTTCGCCCTCAGCCACCGGAAAAAGCTGGGTATACACTGTGATGTCTTATTGATGACAGTTGCTGGGATGAAGCTTCTGCGCTCGTCCTTCTGCAACCCCAGCTACCAGTTCCTCACGCTCATCTTCACCATCGTTTTCTTCGAGTTCGACTACAGCAAGGCTTCTGAGACCTTCCTGCTCAACTTCTTCCTCATGTCCATAGTCTTCCACAAGCTCTGGGATCTTCTGCACAAGCTGCACTTTGTTCTAGTCTACATCGCTCCATGGCAGATAGCATGGGGCAGCGCTTTTCACGCCTTCGCCCAGCCCTTCGCCGTGCCACATTCTGCCATGCTGCTGGTGCAGACATTAATCACCACCGTCTTTTACACTCCACTGAGCCCGTTTCTGGGCAGTGCCATTTTCATCACATCCTACCCACGTCCCGTCAAGTTTTGGGAGAGAAACTACAAcacaaaacGTATCGACAATTCCAACAGCAGACTGATGTCTCAGATTGACAAGGATACCGGCTGTGATGATAACAATCTGAACTCGATCTTCTATGAGTACCTGACACGTTCGCTGCAGCACTCTCTGTGCGGGGATCTGCTGCTGGGCCGCTGGGGGAATTACAGCACAGGCGACTGCTTCATCCTGGCCTCTGATTACCTCAATGCTCTCATACACATCATAGAGGTTGGCAACGGCCTTGTCACCTTCCAGCTGAGAGGTCTTGAGTTCAGGGGCACGTACTGTCAGCAGCGGGAGGTGGAGGCCATTACTGAGGGCGTGGAGGAGGACGAGGGCTGTTGCTGCTGCGAGCCGGGTCACCTGGCCCACGTTCTCTCGTGTAATGCTGCATTTAATCTGCGCTGGCTCGCCTGGGAGCTCACCACCACCAAGTACGTGCTTCAGAGCTACAGCATCAGTGAGAACAACGCAGCCACCATGCTGCAGCTCTACGACCTACGCAAACTGCTCATCACCTACTACCTCAAGAGTATCATCTACTATCTGGTGATCAACCCGAAGCTACAGACATGGCTTAAGGAGCAGTCGATCCACGAGGCCCTGCAGCCGTACAGTAAATGGCACCATATAGAGAGAGACCCAGTGGTTTTCAGTGTTAAGATTGATGAGGACTACGTCCACTGCCTGCAAGGGGTCACCAGGGCCAGCTATTGCAACGTCTATCTCGAGTGGATCCAGTACTGCGCCGGCAAGATGGAGCAACCGGTGGACTGTGATGAGGATTCTCTGCTGGTCACGTTGTGTTTTGCTCTGTCGGTCCTAGGCAGGAGATCTCTAGGCACTGCCTCGCATAACATGTCCAACAGtttGGAGTCCTTCTTGTACGGCTTCAGCACCTTGTTTAAAGGAGATTTCCGCGTCGCCACAAAGGACGAGTGGGTCTTTGCTGACATGGATCTGCTCCAGAAGGTGGTTGCACCAGCGGTTAGGATGAGCCTCAAACTTCATCAGGACCACTTCACGAGTCTGGAGGAGAGCGAGGAGCCGGCCGTGCTTTACGAGGCCATCAGTACATACAGGAGCTCACTGGTGATATGTGACGAGGGCGACCCGGCGTGGCGTAAGGCCGTGCTGTCCAGCAGAGATACACTGCTGACGCTACGCCACACACTGGACGACGGCAACGACGAATACAAGATCATCATGCTGTATAAACGCTACCTCAGTTTTAAAGTCATAAAGatCAATAAAGAGTGTGTGCGTGGGCTGTGGGCAGGACAGCAGCAGGAGCTGATCTTCCTGCGTAACCGTAATCCAGAGCGAGGAAGCATCCAGAACTCAAAGCAGGCACTGCGGAACATGATCAACTCGTCATGTGACCAGCCGCTGGGTTACCCCATGTTCGTGTCTGCCCTCACCACCTCATACGCAGGAACACACAAGCACACGGGCAGCGTCTGGGGCGGCACGCTCAGCCTCGAGGGCATCCGCACATGGCTCTGCTCCCGGTGGCTCCGTGTAAGGAAGGACAATCTGACGAGTTGTAACAGCGGAGTGAACATGGAAGACGTGGACTGTGCTGGCTCTTCTGTTAGTCATACTCACAACTCCGTCACATCCCAAAGCACCAGCACACACCAGCCGCATCCATGAAGCTCACGCACCCGACACCACAGTACAGGACGCCGTGAGTATCGCAGTGGCTCTGTGCAGCCTCAGTGTCAGCGAGCCCCAGTCACCAGTCGCTCAGGGCCGATCCTGGATCTCCAGCAGGGCTCAGGCTCTAACGGCGTCATGCAGCGCCTCTCCAACAGTCAGCTGTCCTTCAACACCTCCTCCATCGCCTCTGTCTTCTCCCAGGTGCCGCGTGTTTCTGCGGCGGGCGCCGTGCTCTCAGCTCAGCCACGCTGCAGTCAGgcctcctcctccagctccacTCTCAGCCTGCTGTTCGGGAAGCGCAGCTTCTCCAGCGGTCTGGTCATGTCGGGTCTCTCCGCCGCTGAGGGAGGaaacagcactgacacacagtCATCCAGCTCCGTCAATATCATCACCCCGGGACCATCAgtacgccacacacacacacagTGGACATCAGAAGCGTATGAGAGTATAGACGCCACATCCACTGTGACTTCAGGGCCAAAAGACAACACAGCATCAGGTGAGAAGAGCCAGGAAGGGTCAGGCTCGGGCTCGGGCTCAGGCTCAGGCTCAGCCTTCCACGAGAACTCAGAGCAGAAGAGCACCTGAGAGCTTTTCAGCATGTCCACACAACTCACCAGACATGATTTATAAACTAAATCACTGTAAAGGTTCGATATTAAAGATACATTATAGAATGGGGTAGTAAACATTCCAGTAAGACTCTAGTGTGTTGAGTTGGATTAAGTGTAGCAGATCTGAGCACTGAAAGTGAAAGATGTCCTGTGGGACTGTGATCAGGAGACGATGAACTGTGTGTTCAAGCATTCTTTCAtacattcattcttttattcaaGTGCTTTACActggtcagggttatggtggatccggagtctatacCGGAATCACTGGGCTCgagtacaccctggatgggatgccagtatattccatacacacacacatatatgtatatttgcaCACTTGTTcactactggcatgtttttgggaggttggaagaaactggagaatccagaggaaacccactcacacacaagaagaatgtgaaaaacacacagccaGTAACCTGAGATCTGGATCGAACCGgggaccatggagctgtgaggtggcaacactaccgtCATCCACAGACTGTAAGATCTCACTGACGCATGTAGCCTCcctttacagaaaataaaaacgaCAAACAGACCAACAAGTCACTTGAAATTTGTCCGTCACTGCTAGGGGGTTTGTATACtgacaaataatataaaagaggATGAGAAGTGGAATGCTTGCTCTGACACCCTGCACAGAATATTCAACGCAAGAACAAAATGAAGTATAATTTCCTTAGCAGTTCATCACTGGACATTAGACGGGGAACATGATCATCATCGTGTCGCTGCTTTATATATGCACAATGGCTCCCAAAGCATGGACACTACAAGAAATTCATTCCGATGTGCATTTAACCACAAAAATTAAGACACTTGGTATCTTCATTAAgatcttttctcatttttcagattttaataCAATGCTGGtggattttaaatattttcagcaTCATAAGCAGCCACATCTGTTATGTGACAGTCTAACATATTTGGCACCTGCAGCATGTGCTTTATTTTTCGTTAATTAAGATGGTAGCGTGATGGTTAATTAAGCCTGAAGTGTCAATAGTACCTCACAAAAATGACCTCATCTAATAGAAGTATCTGCTACAATGGGTCTGTACGGCATTCGGACTGTCAAGCAAATATTGTCTAACAGATTTGGACACGTATGTAGATAAATGACTCCACTGAAGGAGACTCAGAATCGTCTGTTAATGATAGTATTCACCTTTGTGTACACAAGATGAATACACTGTGTATGTcatgttgtattttttgtttaatgataTTGGTATTGTTAAATCCTAAACGATTGAAAGCTCATAAACATGGGAATGACTTTCTCAAACAGGAATCCACTcctcaacatgtttttaataaaacaaaactgctGACTAGTCTTTT

Function

symbol description
pcnx2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PCNX2 (pecanex 2).

NR:

description
pecanex-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944059.2 True 7770 mRNA 0.50 35 9350060 9379729

Neighbor

gene id symbol gene type direction distance location
oprm1 oprm1,LOC108262849,LOC108434947,LOC107743618 coding downstream 81715 9244541 ~ 9268345 (-)
agt agt coding downstream 201352 9144255 ~ 9148708 (-)
pgbd5 pgbd5,LOC107552948,LOC107743535,LOC107725485 coding downstream 221002 9097987 ~ 9129058 (-)
LOC113539201 LOC108262773 coding downstream 397312 8946682 ~ 8952748 (-)
cabp2a cabp2,cabp2a,LOC108434781,LOC107730525,LOC107556818,LOC107746641,LOC107674218,LOC107551591,LOC107664568 coding downstream 423723 8909505 ~ 8926337 (-)
il22ra2 LOC108262818 coding upstream 29341 9409070 ~ 9458592 (-)
khdrbs2 khdrbs2,LOC108443734,LOC107676606,LOC107666564,LOC107743545 coding upstream 147211 9526940 ~ 9630009 (-)
LOC113544990 sorbs1,LOC108443736,LOC106576818,LOC107725459,LOC106604599,LOC102310545,LOC107601782,LOC107666363,LOC107563040 coding upstream 288992 9668721 ~ 9719918 (-)
pik3ap1 pik3ap1 coding upstream 343852 9723581 ~ 9735207 (-)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552 coding upstream 436559 9816288 ~ 9828253 (-)
G43198 NA non-coding downstream 8138 9317428 ~ 9341922 (-)
G43029 NA non-coding downstream 332424 9016202 ~ 9017636 (-)
G42994 NA non-coding downstream 488552 8857258 ~ 8861508 (-)
G42987 NA non-coding downstream 580874 8767988 ~ 8769186 (-)
G42970 NA non-coding downstream 595164 8754151 ~ 8754896 (-)
G43270 NA non-coding upstream 2979 9382708 ~ 9412002 (-)
G43352 NA non-coding upstream 136982 9516711 ~ 9517005 (-)
G43509 NA non-coding upstream 148787 9528516 ~ 9528727 (-)
G43569 NA non-coding upstream 379747 9759476 ~ 9760212 (-)
G43586 NA non-coding upstream 381515 9761244 ~ 9761467 (-)
sf3b5 sf3b5 other downstream 121176 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 496266 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 566262 8754914 ~ 8783798 (-)
LOC113539440 NA other downstream 857077 8483303 ~ 8492983 (-)
trnae-cuc_7 NA other downstream 879631 8470358 ~ 8470429 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other upstream 620230 9999959 ~ 10008561 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other upstream 756581 10136310 ~ 10161523 (-)
trnag-gcc_1 NA other upstream 2328885 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 2631202 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 2765111 12144840 ~ 12152522 (-)

Expression


Co-expression Network