cpxm1a (cpxm1)


Basic Information

Item Value
gene id cpxm1a
gene name cpxm1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19190273 ~ 19201133 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944204.2
TTCTAAGGTCTTTTGGATTTAAAGTTCTTGTGAGAGCCAGAGAAGTTGCTGCAGAGACACAATGCTCGGTCGAGGTGTGTGCGCCCATCTGGCcccagtgctgctgctgctgctgctgtattcTGCACTCATTACGTCCTTCCACAGCGAGACCATAAAAAGCAATGGAACCAGTGTGACTTTTAATGAGACCGAATTATTTTTAACAACTCCTCGTACTGACAGTAGAGATCACGGCACTGTACCGGCGCGCGCCAGGACGCCTGCTGTGGAGGACACAGAGCAGAAAATCCCGGATTCTGTGCAGAAGGAAAAGTCGGACCCAGGACACACAACTAAACCCGACTGTCCACCAGTGGGTTTGGAGTCTCTGAGAGTGTCTGATTACCAGCTACAGGCTTCGTCATCATTGAGCAGTGGGTTAGGCCCCCACCGAGGACGCCTCAACATACAGtcaggtctggaggACGGAGATGAGTATGACGGAGCATGGTGTGCTGAGATGGAGGATAAAGAGCAGTGGTTGCAGTTGGATGCTCTCAGGCCAACACTCTTCACTGGGGTCATTCTGCAGGGAAGAAACTCCATCTGGAGcttgCACTGGGTCACACGGTATAAGGTGCAGTTCAGTAATGACTCTGTGACATGGCAGCCCTGCATGAATGGATCACAAGAAGCAGTGTTTGTGGGAAATCAGGACCTGGAGACTCCTGTGCTGGCTCTGTTCCCTGAACCCACAGTGGCCCAGTACATTCGCATCAACCCACAGAGCTGGTTCACCAACGGCACTATCTGCCTTAGAGCTGAAATCCTGGGTTGCCCCATGCCAGATCCTAACAACCAGTACACCTGGGAGTCAGAGAGGGTTTCTACCGACAAGTTAGACTTTAGACACCATAATTATGTTGAGATGAGAAAGTTACTGAAGGCAGTGAGTGACGAGTGTCCTGATATTACACGTATCTACACTATTGGAAAGAGTTACACTGGGCTTAAACTCTATGTCATGGAGATTTCAGACAATCCTGGAAAACATGAACTGGGAGAGCCAGAGTTCCGCTATGTTGCTGGAATGCATGGAAACGAGGCCTTGGGTCGGGAACTGGTGTTGAACCTTATGCAGTACCTCTGCCACGAGTACAAACGAGGCAATCAGCGAGTAGTTCGGCTGGTGAAAGAAACACGTATTCACCTTTTACCATCCTTCAACCCTGATGGATATGAGGCAGCATATGAGAAGGGGTCTGAGCTTTCTGGTTGGGCTTTAGGTCGCTACAGCTTTGAGGGCATTGATATGAACCATAACTTTCCCGACCTCAACAACATCATGTGGGATGCTCGGGAGCTGGcaacagacaaaaagaaagtcAGCAACCACTACATCCCCATGCCAGAGTACTACACCACAACCGAAGCAACAgttGCTCCAGAGACTCGAGCAGTAATAAGTTGGATGCAGGACATTCCGTTTGTTCTGAGCGCTAACCTGCATGGAGGAGAGCTGGTGGTCACTTACCCGTTTGACTGCACGCGAGACTGGATCCCCCGTCAGGACACACCTACTGCAGATAACGACTTCTTTCGCTGGCTGGCAGCTGTTTATGCCTCCTCCAATCTGGTGATGGCCAACCCTGACCGCAGAATGTGTCATTATGAGGACTTCCAGCGttataacaatattattaatGGAGCTGACTGGCACACTGTCCCAGGAAGCATGAATGACTTCAGCTACTTGCACACTAATTGCTTTGAGGTGACTGTAGAGTTGTCGTGTGATAAATTCCCTCATGCCAGTGAGCTTCCTGTTGAATGGGAGAGTAACAAGGAGGCTCTTCTGCTCTATATGGAGCAGGTGCACAGAGGCATAAAAGGTGTGATCAGGGATAAAGACACTAAACAGGGTATTGCAAATGCTATTGTTAAAATCGAGGACCTGGACCATGACATTAGATCAGCTAATGATGGTGATTACTGGCGCCTGTTGAACCCCGGTGAGTATAAGGTGATTGTGTGGGCAGAGGGCTACTTCCCTGCTATGCGTCACTGCTCTGTAGGCTCAGAACCACAGGCCACCATCTGTGACTTCAACCTTACGAGAACACCACAAGAGCGCATCAAGCAGATCCTGGCCAAAGGTGGGAAGCTCCCCCGGGACGAGCAGCTCCGCATCAGAGCCTTGCGAATGCGTAAACTCAGAGTCAGCACAAAGATTCTGAACCGCCGGCGTGAGCAGCAGCGGCGTGCCAAAGTCAAGAGAAAGTGAATGACATGCTGTAaatcacaaaacacagaaatgagCCAATCCCTGCTTACAGAATTAGAATGTGAGGAGGCTTAGATAGACGTAAAGTAGAAGTGTGTAGCCGAGGCGGCTCAGGTCAGTATCTTACCTTCTCGGCATGCTGCACCGTTCATTCTGGGCTCTGAACTCAATGGCCAGCCTGTTCAAATACGAAATTTTAAACTCGGTAAAAGGAacccaagtattttattcctgtaAAATGGTGCAGTGTTCACTATTAAATTAGCCCATCACTGCTCTGCACATAAAGTGTACCTGTGAGCATCTTTTAAACACTGAATGTTTATACAATTAATGCAGTTGTGAAGAACGCACCAGTGAAAATGCTAGGTGTAGCTGGTTTTCTACACCCATAGCAATTTTGCATCAGCAACATGTAACAAATTAGACCTTTTCTTATTctacactttaataaaaaaataaaataaataa

Function

symbol description
cpxm1 Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in peptide metabolic process and protein processing. Predicted to be active in extracellular space.

NR:

description
PREDICTED: probable carboxypeptidase X1 isoform X2

GO: NA

KEGG:

id description
K08638 CPXM1; carboxypeptidase X1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944204.2 True 2737 mRNA 0.48 13 19190273 19201133

Neighbor

gene id symbol gene type direction distance location
pdzd7a pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 125250 19046016 ~ 19065023 (+)
zgc:154058 zgc:154058,LOC108263524,LOC108441772,LOC102793226,LOC103041715,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC106613076 coding upstream 179626 18983106 ~ 19010647 (+)
ftr14l LOC108263523,LOC108441770 coding upstream 208957 18977234 ~ 18981316 (+)
LOC117596455 LOC108262933,LOC105007542 coding upstream 213672 18973637 ~ 18976601 (+)
LOC113538004 LOC108263518,LOC108262933,LOC105007542 coding upstream 217067 18968494 ~ 18973206 (+)
si:dkey-33c12.4 LOC108263338 coding downstream 36223 19237356 ~ 19243873 (+)
si:dkey-33c12.3 LOC108263340 coding downstream 45885 19247018 ~ 19250422 (+)
mrps26 mrps26,LOC107678578 coding downstream 51717 19252850 ~ 19254354 (+)
rab11fip5a rab11fip5,LOC108263817 coding downstream 117692 19318825 ~ 19339637 (+)
cdc25b cdc25b,LOC108417292,LOC104960468 coding downstream 201799 19402932 ~ 19410091 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding upstream 174699 19014191 ~ 19015574 (+)
G48911 LOC108263518,LOC108262933 non-coding upstream 215563 18970798 ~ 18974710 (+)
G48908 NA non-coding upstream 222496 18967406 ~ 18967777 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding upstream 478978 18708032 ~ 18711295 (+)
G48482 NA non-coding upstream 488367 18673311 ~ 18701906 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding downstream 1097 19202230 ~ 19203687 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding downstream 65412 19266545 ~ 19267589 (+)
G49157 NA non-coding downstream 93949 19295082 ~ 19295293 (+)
G49214 NA non-coding downstream 199518 19400651 ~ 19400883 (+)
G49316 NA non-coding downstream 413584 19614717 ~ 19617317 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 153629 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 278078 18902438 ~ 18912195 (+)
dlg5a dlg5 other upstream 968223 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 2213244 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 2722923 16465939 ~ 16467350 (+)
grxcr1b LOC108263619 other downstream 13074 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 54931 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 140217 19341350 ~ 19356098 (+)
pprc1 LOC108263826,LOC108421584 other downstream 1181213 20382346 ~ 20392601 (+)
G49862 NA other downstream 1373840 20574973 ~ 20575479 (+)

Expression


Co-expression Network