atl1 (atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217)


Basic Information

Item Value
gene id atl1
gene name atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12403949 ~ 12418948 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944217.2
CTGAATGCTGAAAGTGTTCCTCTCAGCTGAGAATGAGGCGTAGGGAGCATCGCAGCGTTGCCATTCCCGTTTCCTGTCTGGATGATTGTTGATGAAGAGCGCGCAGTGAAAGCCAGCGGGCTGGAAAGCGACACTCCATGCACCATGGTCCGGGATAAAAAGGATAGAGACAGCTGGGGGTCTTTTGTGGACAAGCATGTATTTGAGTGGAGCTCTGAGGATGAGGAGCCAGACGGTAAGGCTCGGCCAGTGCAGGTTCTGGTGGTGAAGGATGATCACACGTTCGAGCTGGACGAGGCAGCGCTGAGTCGGATCCTGCTGGCCAAAGacctcagagacagagagatagtcGCAATATCTGTTGCTGGAGCTTTCCGGAAGGGGAAGTCCTTCCTCATGGACTTCATGCTACGCTACATGTACAGCCAGgcGAGTGAAGACTGGGTAGGGGATCCTGATGAGCCTTTGACAGGTTTCTCATGGAGAGGAGGCTCTGAGAGAGAGACCACAGGCATCCAAATCTGGAGTGAGGTCTTCCTGGTGGACAAACCAGACGGAAACAAGGTGGCAGTGCTGCTGATGGATACACAGGGAACGTTTGACAGCCAGTCCACGCTGAGAGACTCAGCTACTGTATTCGCCCTCAGTACCATGATCAGCTCCATGCAGGTGTATAACATATCACAGAATGTTCAGGAGGATGACTTGCAGCACCTGCAGCTCTTTACAGAATATGGTAGACTTGCCATGGAGGAAACGTTTCTCAAACCGTTTCAGTCAATGATTTTCCTGGTGAGAGATTGGAGTTTTCCATATGAGTTTCCCTATGGACAAGAGGGAGGGATGAAGTTCCTGGAGAAAAGACTAAAGaTTTCAGAGAACCAGCATGAGGAGCTGCAGAACGTGAGGAAGCACATTCACTCCTGCTTTACCAACATCTCCTGCTTCCTCATGCCTCATCCTGGCCTCAAGGTCGCCACCAACCCCCACTTTGATGGCAGACTCAAGGAGATTGATTCAGAGTTCATCGGTAACCTGAAGGTGCTGGTGCCATGGTTACTCAGCCCCAAAAACCTGGATGTCAAAGAAATCAATGGCAGCAAGATTACCTGCAGAGGCCTGCTGGAGTATTTTAAGGCATATATAAAGATTTACCAGGGAGAAGAGTTGCCACACCCCAAGTCCATGCTACAGgCCACTGCAGAGGCGAATAACCTGGCAGCTGTAGCTGCAGCTAAAGACCTGTACAACCGAAAGATGGAAGAGGTGAGTGGGGGTGACCGGCCATTTCTAGCCCCGAGTGAGCTGCAGGCTCGTCATGCAGTGATCCGTGATGAAGCCCTAGCTGTGTTCCGTGGTGTGAAGAAGATGGGTGGCGAGGAGTTCAGTCGCCGCTACCTGCTGCAGCTGGAGGCAGAGATCGACGAGCTCTTTGTGCAGTACATCAAGCACAATGACTCCAAGAACATCTTCCATGCAGCACGGACACCCGCCACGCTCTTTGTGGTCATCTTCATTATGTATGTGGCGGCGGGCATCACAGGCTTCGTGGGCGTGGATGTGATCGCCAGCGTGTGCAACATGGTTCTGGGTTTCGCTCTCATCACGCTCTGCACCTGGGCCTACATCCGCTACTCCGGCGAGTACAGAGAGCTCGGCGCCCTCATAGACCAGGTGGCTGGAGCGCTGTGGGACCAGGGAAGCACTAATGAGgCTCTGTATAAGTTGTATAATGTGGCTGCCAATCATAGGCAGCTGTACAACCACGCCTTCCCCAGACACCAGACTGAGCAGCACCCCGAACAGGACAAGAAGAGAAactgagaacacacactctctcacacacacacacacacacacacacacacacgcaggccCAGATGTACACCCACTCTGTCAAAGAGATGCTCCAGCCATAGCACACTTGAGCTTTTTGGATCATGCACGTGACATcatggacagagagaaagagaaatcaagagaaatagaaaatgcaaaaaattcGCATTAATGCTGTATAAGGAACAAAGGTCAGATTCAGTTGCCATGGCATGGCATGCCACTAATAGCTCACAGAAATCCAGTATAATAGATAATAACTCCTGGAAATCCAGTAATGTAGATTGGAATCCCAAGATCTAGGTCCAACTCAGCCTGGATTTTCCACCAACAAGATGTTGGAACTGATTCAGGGAACCAGTGAACAATCCACTCGCCTTTCCACCGGGTTAAGAGCCAAACCATTACATAATCAGAGCATATCTTACCATCCAaagtaatattcataatatgTGGAATTAGTATTGTAAGGTTCTATCTCCAATTCATTCAAACaccagatagaaccttatagtAGTAAAGTCATAAATTGTTATACCTTGTCATGCACAAAGATTATATACAAAATGCCAGATACATGTGTGGCACttattagcattaacattaataaagttGCTCCCATTCA

Function

symbol description
atl1 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon guidance; determination of dorsal identity; and negative regulation of BMP signaling pathway. Located in late endosome. Is expressed in brain; primary motor neurons; and spinal cord neural tube. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D and hereditary spastic paraplegia 3A. Orthologous to human ATL1 (atlastin GTPase 1).

NR:

description
PREDICTED: atlastin-1

GO:

id name namespace
GO:0048263 determination of dorsal identity biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005770 late endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17339 ATL; atlastin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944217.2 True 2464 mRNA 0.49 14 12403949 12418948

Neighbor

gene id symbol gene type direction distance location
dmac2l atp5s coding upstream 62957 12330050 ~ 12340992 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding upstream 260920 12134099 ~ 12143029 (+)
LOC113542347 stk32c,LOC107670801,LOC102790870 coding upstream 283436 12037501 ~ 12120513 (+)
nkx6.2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 588297 11812785 ~ 11815652 (+)
trnag-ccc NA coding upstream 812544 11591335 ~ 11591405 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding downstream 98605 12517553 ~ 12522746 (+)
frmd6 frmd6 coding downstream 155039 12573987 ~ 12594144 (+)
LOC113545271 NA coding downstream 182130 12601078 ~ 12603749 (+)
LOC113545096 NA coding downstream 188581 12607529 ~ 12609839 (+)
LOC117596891 NA coding downstream 194094 12613042 ~ 12615207 (+)
G45040 NA non-coding upstream 88079 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 245721 12156248 ~ 12158228 (+)
G44974 NA non-coding upstream 247827 12154384 ~ 12156122 (+)
G44970 NA non-coding upstream 259547 12144117 ~ 12144402 (+)
G44891 NA non-coding upstream 271772 12131807 ~ 12132177 (+)
LOC113542444 NA non-coding downstream 70566 12489514 ~ 12499019 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding downstream 228947 12647895 ~ 12648406 (+)
G45170 NA non-coding downstream 255460 12674408 ~ 12674623 (+)
LOC117596851 NA non-coding downstream 314484 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 391971 12810919 ~ 12811250 (+)
LOC113544122 NA other upstream 637535 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 658725 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 696944 11706935 ~ 11707005 (+)
dntt dntt other upstream 1196087 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 1795245 10594574 ~ 10608704 (+)
trnay-gua NA other downstream 217372 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 220369 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 510611 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 563458 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 613102 13032050 ~ 13034350 (+)

Expression


Co-expression Network