slc17a5 (slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676)


Basic Information

Item Value
gene id slc17a5
gene name slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14331492 ~ 14341288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944267.2
CACGTAATTGGGATGCGTCGATGTCCGGGAAGTAAACAGTTCACATAGACTGTGTGAGCCATGGACCGCATAGCATCAGACACAGAAACTGATGATTATGAGCAGCCTTTGCTTCATCGGAAAAGGGACGACGGCATAAAAAGAGCTCCTGTGCTATGCTCTTCACGCTATGGCCTTGCCTTACTGTCATGCTATGGCTTTTTTGTGGCATACGCGCTCCGGGTGAATCTCAGTGTGGCCATGGTGGATATGCTGCGAAACAGTAGCAGCAGTACCAATGCCAGTGGCTCTGTGTGCCCGAGGCATACCAGTCCGACACGGCCCAGACACAACCACACAGCCAGTGTGTATGACTGGGACTCAGAGACTCAGGGCTGGATCCTGGGCTCTTTCTTTTACGGTTACATCGTCACTCAGATACCGGGTGGCTACATGGCACGCAAGTATGGTGCCAAGTGGCTGCTGGGCTTTGGCATCCTGGGAACTGTGATCTTCACCCTGCTAACGCCTGTGGCTGCAGACCTGGGAGCTGGTTATCTCATCACAGTCAGGGTGCTAGAGGGCATAGGGGAGGGAGTGACATTTCCTGCTATGCATGCTATGTGGGCATCCTGGGCTCCACCCTTGGAGAGGAGTCGACTGCTTACTATCTCTTATGCAGgtgccCAGCTCGGTACTGTAGTAGCCCTTCCTCTGTCTGGTCAGATATGTTTTTACCTGGATTGGACATACGTCTTCTATATATTTGGGGCTATTGGGCTACTTTGGTTTTTCCTGTGGGCTTTTCTGGTCAGTAACagtcctgacacacacagaaggaTATCAGAGATTGAGAAGAGCTACATAAaagcttcattaaaaaaagagCTGTCTCCCACTTCAGCCTACATCCCCTGGCCTTCCATTCTCACATCTGTTCCACTATGGGCCATAGTTGTTGCACACTTCTCCTACAACTGGACATTTTACACACTGCTGACTCTCTTACCCACCTACATGAATGACATTCTGGGCTTCAGCATTAAGGAGAATGGGATGCTCTCTGCCCTGCCATACTTGGGTTGCTGGCTGCTAGCCATGGGAGGAGGCCAGTTAGCAGACTACCTGAGGGAGACCTGCCTTTTCCGCACTGTGACTGTGCGCAAGGCCTTCACTATAGCAGGTATGGTGGGACCAGCTGTGTTCCTGGTAGCAGCAGGATACACTGACTGCAACTACATTCTGGCTGTTGTTTTCCTCACTGTCTCCTCGACTCTGGGAGGCTTTTCTGCATCTGGCTTTAATATCAATCATCTTGACATCGCACCATCGTATGCTGGAATATTGCTAGGAATCACAAACACATTTGCAACTATACCTGGCATGGTGGGTCCTGTGATAGCGAGATCACTGACCAAATCTAACACTATTGCGGACTGGCGAACAGTCTTCTTTATCTCAGCTGGGATAAATCTGTTCGGTGCTGCCTTCTACACATTGTTTGGAAAAGGTACAGTACAGCCCTGGGCAGTGCAGAGAGTAAACACagaataaaaagtattttaaggAACTCAAAGGACACTATGGCATTAAGAATTCAGGGGAAGGATTCCGATGATTCTGTTTGAAGATTCGAGCACAGCTCGATGCTGTTTTTGGTAAACAAATGTCTGAATGTTCTCTAATaacattttaagttttaaaaggATGTTCTGGTGTTTGTTGCTCTCTCAGTGTTTTCACTTCCTTGTTGTTTTTAAGCATTTTGTATAATTTAGGAAGTCAGTATTTTCACAGGACACATGTCTTCAGCCAGTGTACATCTAAAATAGCAGACATTTAAGTTCAGTGCCTAAAGTTTGCTTTCAGTTCATTTTAACTGCTCAGCAAAGCTTGGATTGTCTTAAACCAGAGGTGGGTGTCCATAACGGCAGGTGGGGCAGAGCTGATGTGTCAGCcgttcaacaaatattaatcttcataaagtccttgTTCACAACTCCattactaattacctcttttgtgTTACTaacgatttaaaaaatatatattgctATTTGTCAGAAGTCATGTTCCATTGATTGCtcgcctttctagatgttgcacaatcaGGGGGCAGCTCGCTCATTGCCCAACTTAACTTCCATAGAGTTATGATTCcatctagtggtcaaaaatgggaaaaagtgCTAATAGAGCCGCACTGGGGAAAGAATGATGCTGCCATGCTAGCTCTATGAACATTTCCAATGTAGGAGGAGGAACGGCCAGGAGactagcccaatctggcaaccctaagatcttgttttatagtacataatcagaattaaatctaataaagtaCAGACGGCATCTATGATATACTGAACTATTTCTACTGTAAAATATACTGCAAATATTGGAATAGTAAAAGGGGAGTATGGATTGGATAATATCTGTACATGAGAAATGTGTGCATACAcaagtgaccttgtttcccatgcaaagacTATGGGGAAAGATGCTGTGAGATGGCATTCTGAATGACAGTATGTTGTCGACTCTCAGCTGCCTAGTACAGGGATTCACTAGATTGTAGCCTATAGCACTGGTAAAGTGTGATAGCCCCTtaacttcattttgtttgaaacTATATTGTTAATCATGttgtcctgccccaccaaaatctatggtaaTGAGTTTGTCTACATTTTTAGAGTGTACATTAAAATACCTATTCACTCTTCCATCTAGGAACATGAAGTGAACTGAGCTAGATTTAAGTTGTAGCTTAAATAAACTTGTTTAAaatgcagaggtgccaacatctacGTTTTATCtgcaatatttacaatttatgacCCTGTGGTGATATAGGAGACACCTGAAACTACACTTGTTCTGcattttcagttaaaataataatacacaagtAAAATCCACCCGTCAGAATAGTTATTTTACTGAGGGAGAAAGGACGTGGGACATGACAGTCTCTCATTTGCTTCGGGTAGCGGTTACTTACACTTTCTGctgactttatctaggtgaattTTGACCTATAAATTTACAAGTCTGGTCTTTTGAACCAGTAGAAACCAATTGAGTGGGACTATAGTCTCTGGGGGGAAACTTTTTAAGTAGTGGTCTCACCAGATGACTTCTTACTGTTTCTTTGCACacatctgggaaaaaaaaagctgccttGTCCACAGACATAAGCTAGGGTCTTTGGgggtaaaattctgttttgtcTCTCTGCTTGCTAAGATTTACTTGTTATCAATGTTGGCACATCTGTAAATGTAAAGAGTGGTAATGTTCAGTGTCTGCAGAAATTCCTCTCTAGCCACACAGGTCTTATATCAGCAGTGACTGATAATTGGCTCATTGCACTCTACATGCTAGTTTagatttttatagttttatgtTCTGTTTAGAATTACTGTTGGTTATAATAATTTTGAAGACAGTACAAATATGATAGAATGAGAAATTTGTTGCTTTTAATCTTTTATGTTAATAGTAAGGAATTGTCTGAAAATCATttgaatcaaattgaatcacattttctctttgttgaaaaaaatctcatttttatttttcttggtaTTGTgccttacttttattttaagccCATAAAACGGTTTCATTATAAAACACTTGACCTACAATCTCTGAGATTTtacttgattttatttctgtctgtttacATATGGGTAATATGAAGCTATAAAATGTAGGAGGTGTATATagttgcttgtttttgtgttcttttttttttatacacgtcacattgttttgttttgtttttttagctcGTTGTAATCTATTGTTTACTTAAGACATGAAGTCAGATCTCAGGAATGGAAACAgtggaaagaaatgaataagaatgaatgaattgtaaGAATGACACCTTAAGTGAAAAGAACATTTGTCCCCATGCAGTTTGCTACATAGCTGAAGTATTGTGTAAGCTATGTCTATTCAACATTCCCCAGTGAAAAGTCTTGCATTCGCTTAATCTCCCTTgaccataaaaaaaatcatgttcattcaaagtaattaaaatgcataaatcaGT

Function

symbol description
slc17a5 Predicted to enable sialic acid transmembrane transporter activity. Predicted to be involved in sialic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in lysosome. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; polster; and yolk syncytial layer. Human ortholog(s) of this gene implicated in sialuria. Orthologous to human SLC17A5 (solute carrier family 17 member 5).

NR:

description
sialin

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12301 SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944267.2 True 4045 mRNA 0.41 11 14331492 14341288

Neighbor

gene id symbol gene type direction distance location
rin2 rin2,LOC105893488 coding upstream 3193 14296334 ~ 14328299 (+)
si:dkey-187a12.4 LOC108263835 coding upstream 38629 14289382 ~ 14292863 (+)
soul2 NA coding upstream 134418 14193834 ~ 14197074 (+)
fancl fancl,LOC107585345 coding upstream 275029 14035638 ~ 14056463 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding upstream 698014 13588316 ~ 13633478 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding downstream 5309 14346597 ~ 14351235 (+)
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding downstream 253914 14595202 ~ 14611970 (+)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107588666 coding downstream 317468 14658756 ~ 14672999 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding downstream 516641 14857929 ~ 14871099 (+)
fgf8a fgf8a,fgf8,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding downstream 557534 14898822 ~ 14904713 (+)
G46217 NA non-coding upstream 43205 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 147846 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 148299 14182991 ~ 14183193 (+)
G45875 NA non-coding upstream 434957 13894142 ~ 13896535 (+)
LOC117596881 NA non-coding upstream 441643 13889279 ~ 13889849 (+)
G46337 NA non-coding downstream 46741 14388029 ~ 14388311 (+)
LOC113541837 NA non-coding downstream 276320 14617608 ~ 14626490 (+)
G46638 NA non-coding downstream 624618 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 672835 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 738525 15079813 ~ 15084310 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 44950 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 830442 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1297142 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1326169 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 1394190 12929559 ~ 12937302 (+)
cgas NA other downstream 20079 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 631280 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1452118 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1729426 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1783339 16124627 ~ 16134002 (+)

Expression


Co-expression Network