pdzd7a (pdzd7,LOC107690160,LOC107570534,LOC107678494)


Basic Information

Item Value
gene id pdzd7a
gene name pdzd7,LOC107690160,LOC107570534,LOC107678494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19046016 ~ 19065023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944280.2
AACTGTGAAGGGTTACTCCAGTCATTGTTTAGCCAGAGGAAGCTCTCACTCTGGACAAAAAGACCAGGTGGAGCACTTACAGAGAGTATCCTAACATCCTCAAAAGTCTACTTGGATCCACTGTTTTTTATTGCTTTGCCCCTTCGACATATGCTGGAACCATGCAGAATAACACTCTTGGCAAATAGTGCAGGACCCTTACGGTCTTGTTCTCTTGTGCCATTGTGACAGTTTCCCTTAGCACAGTCCATCTTGTGGAGTCTCCTTCCTGTGCCTGACACTGACATACCAGACCTCCAGTATAGTTGCTCCCTTTCCTTGTTGAACCCCAATCCCTGAATGAGGGTTCGAGGGGGGGTCCCGATCCCCATCTCGCCATGGCTTATTCGTCTGCTGAGTCTCGCAGAGAGATGACGAATGGGGCCCATCCTAACACCCATCCAGGAGGCCCGGGAACCTCCACGTTGCCACGATACTTGCACAAGAAGCAACAGCGGCAGAAGGGAATGAGATCTTCCTCCCCAATGGGTAGAGTCATCCTCATCAATGCACCTGTGGATGGTGGGGATGATAGTGAAGACATCCACACAATCACTGTGGACAAGAGTGAAGATGGTAGGCTGGGCTTCAGCGTGCGTGGTGGCTCAGAGCATGGCCTTGGCATTTTTGTTAGCAAAGTGGAGGACAATAGCTCTGCAGAATTTGCAGGGTTGTCTGTTGGGGACAAGCTGGTGGAGGTGAATGGGATCAGCCTGGAAAGCATCACCATGAGCAGTGCTGTGAAGGTTTTAACAGGGAACAACCGCCTGCGCATGGTGGTTAGGCGTGTAGGGAAGGTGCCTGGAATCCGCTACTCCAAAGAGAAGACCACATGGGTGGATCTTATCCACCGAAGGATGGTAGTGGAAGAGAGTGGTCGCACCCCCTCCGAGGTCAGCTCAGATGGAGCTTTGCGCCGGATAGTGCACCTCTACACCACCTCAGATGATTACTGCCTGGGCTTTAACATCCGTGGTGGCAAAGAGTTTGGCCTGGGCATCTATGTCTCAAAGCTGGACCCTGGTGGCTTGGCAGAGCAAAATGGTATTAAAATGGGAGACCAGATTCTGGCAGCAAATGGAGTGAGTTTTGAAGATATTACACACAGCAATGCCGTGGAAGTCCTGAAGAGCCACACCCATGTCATGCTCACCATTAAGgaGGCTGGGAGGTATCCTGCATATAAGGAGATGGTAGCAGAGTACAGCTGGCtcaataaatTGGCTAATGGGGGCCAGCCAGCCTCCTCTCAGGGTTCAGACTCCTACTCGtccacctcctctctgtcctctgGGACACCAGTCAGCTCCCTCAGCGGCCTCTCTCAGGTCATGTTTCCCCCTCCATTTGGCTCAGAAATGGTGGATGTGTGCATCTCTACCGAGGATGTCTCATCACGCAGGCCCAGCTCTGATCGCACTGAGACAGCCATCCAGACCGACCCCCTGGATCCTGACACATCACCCCAACCCACCAGGGTCATCTCCATGGACACCAGCCGGCTGGTTGGTGAGACCGTTCTTTTGAAGGACACAGTGATCAGGAGTGGCAGTTTTGATAAGAGTCGTGAAGCACAAAAAAGGACATTTTCTGCAGGAGACAAGGAAATTCTGGACTCTCCAAAAACTGCAGTGCTAATGGCTCTCAGTAAACCTCGCAAACCCATCCGCCGATCCCAGAGTCATATCACTGTCTCAGaggacaagcagaagaagaagaaacagcagCAGGCAGTGAAGGCTGAGGCCTCTGGAAGTACCCTGCAGCGCTCCAAAACTTTTGTCAGTCTGCTGTTCAAAAGTGGTCGAAGAAGAGACAGATCTGCCTCTAGAGACAGGAAAGATATGGGGACAGGAGAGCGGCATCGAGCACGTTCCAAATCACCAGCGGCCAAAGAGCGCAGCCGGTCCATCATTAATCTCCTGAGTTCTCCGCGGGAGACACGTGCTGGTGTGTGGGAGCCCGAAGCGATGCCCAGTCCCGAGACCATGGCCATGGTGGAGAGCATGGCGTGCAAACTGCTGAGTGAGGATGAGGTGGCTGCAGTAATGAGACACTGCAACAGGTTTTTGGCAGAGCGGGTGGTGGAGGACTTGGTACGCCCCCTGCTGGCTATCCTTGACAGACCTGAAAAGTTGCTGCTGCTGAGGGAGATCAGAATGATCATCCCCCCAACAGACCTGGGTCGGTTTGACAGCATGGTAATGCCTTTTGAACTGGAGGCCTATGACATTTTAAAGAGCCGCTCTGTGCGCTCCCCGGTTCTACGCTCTCCTCGGCATGGTGGAACTCCACGCCGCCATCTCATAACACCCATCCCAGACTACAGGGGAGGCTTCCAGCTGCAGGCTGTGCAGGATTTGGAGCGAGATCGACAGCTTATGCAGGAGCTGGAGCGGCTCAGACTGGCCGGCCTCCCCACTGGCAAGCTCCCTCCTCCCCGAGCCTTCACACCTCTGTTGGACATACCCGTGGACAGCTACATTTCTGGCTCCATACGGCAGCGCTCCTTAAGTCCACCTCGCCCCAAACAGCTGCTTGACGAGTCCCCTCACAGCACAGAGTGGCGTGGATGTTCTCCTAAAAAACAAGAACATGATTTGCCCCAAATGGCAAGCCATGGTAATAGCACTCCAGAGCGGGGAAGATCACCATACAGGAACGGCCATGGCAAAGCTACAAGGGCCAGATCTGGCAATGGAAGAGAGGTTAAGTACACAGTGATGAGTGCACACAGGAGGAGCAGAACACCACTAACGCAGGTATTTGGGCCAGACATGCCGCATAATCCAATGGAAAGGGAGCAGGCAAATGGACATGCTGGTTCCTCAGAGAACAGCCAAGACAGTCTGACAGTGCAAGACTATGAGCTGACCACCGTATTCATCTCTAAGTGCAAACAGTCTCTCGGTATAAGTATCTCAGGGGGCATTGAGTCCAAGGTTCAGCCAGTGGTGAAGATTGAGAAGATATTTCCAGGAGGAGCTGCCTCCACCAGTGACGTGCTGAAGGCTGGATTTGAGCTTGTGTCAATTGATGGAGAATCACTCCAGGGAGTCACACACCAGCATGCAGTGGATGCCATAAGGAAGGCTTTCAGCAACAAGGCCAAAGAACCCATGGAGTTTGTTGTCAAAATCCCGAAGAACCTGAAAGCCTAAAGCAAAATCTCATGTACTGTGCTGTACTATAGAGACAGATTGAGACCCAGAGCTCAGGTCATACTGTACAGGCTctgaagagaaaacagaaaacctgaAAGAACACATCTTATGATAAGGGAAGCTACATGGAAAAGCAAAGCTGCCACTGTACAATGCGAATCCATTGCTGAACCAACATGCCCAAAGGGTGATGTCTGAAAGAGGGCTTTCAAAGAGAGTTATTGTGGCTTTATAATCATTGGGCTTTTGGACCAAAGTGTTTATGTCTGGAGAGTCAATGAAGATTCAGTGACATAGCATTATTATCAATGCttgaacatgtttatttaagatCATATCTACTTCATATCTCAGCAGTGAAgaatttgtgtgtaaatttagcATTAATTCTGCTAGTGCAAGAAGTATGTTGGTATGGATCATTACATTATAACACTACAACACATCCTCCAAAAACAGGGAGTACAAAGTTCTGGAGCAAAGATTACACAAgattatgatatgatatgagaTTTATACTGAATTTataatttactattttaatttaGTTCTATCAATTTTAATCTTGTTTGGTCCCTTGAGGTATTGCTTTGAAGACATAGTGAATAGGCTTTATACACACTCATGCAAAGACTTTGCCTGCGTTTGTTTATAACACTTTCTAACGAgtaaaatatgtacataataATAGAAAGTAATAGTTAAAGCAATAATAGCAGTGA

Function

symbol description
pdzd7 Predicted to enable identical protein binding activity. Predicted to be involved in auditory receptor cell stereocilium organization and sensory perception of sound. Predicted to act upstream of or within auditory receptor cell development; detection of mechanical stimulus involved in sensory perception of sound; and establishment of protein localization. Located in cilium and nucleoplasm. Implicated in Usher syndrome type 2A; Usher syndrome type 2C; and autosomal recessive nonsyndromic deafness 57.

NR:

description
PREDICTED: uncharacterized protein LOC103360635

GO:

id name namespace
GO:0060119 inner ear receptor cell development biological_process
GO:0042462 eye photoreceptor cell development biological_process

KEGG:

id description
K21882 PDZD7; PDZ domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944280.2 True 3925 mRNA 0.49 16 19046016 19065023

Neighbor

gene id symbol gene type direction distance location
zgc:154058 zgc:154058,LOC108263524,LOC108441772,LOC102793226,LOC103041715,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC106613076 coding upstream 35369 18983106 ~ 19010647 (+)
ftr14l LOC108263523,LOC108441770 coding upstream 64700 18977234 ~ 18981316 (+)
LOC117596455 LOC108262933,LOC105007542 coding upstream 69415 18973637 ~ 18976601 (+)
LOC113538004 LOC108263518,LOC108262933,LOC105007542 coding upstream 72810 18968494 ~ 18973206 (+)
si:ch211-198a12.6 si:ch211-198a12.6,LOC108263519,LOC108444387,LOC103030417,LOC107589522,LOC107747450,LOC107678580,LOC107690167 coding upstream 82141 18958384 ~ 18963875 (+)
cpxm1a cpxm1 coding downstream 125250 19190273 ~ 19201133 (+)
si:dkey-33c12.4 LOC108263338 coding downstream 172333 19237356 ~ 19243873 (+)
si:dkey-33c12.3 LOC108263340 coding downstream 181995 19247018 ~ 19250422 (+)
mrps26 mrps26,LOC107678578 coding downstream 187827 19252850 ~ 19254354 (+)
rab11fip5a rab11fip5,LOC108263817 coding downstream 253802 19318825 ~ 19339637 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding upstream 30442 19014191 ~ 19015574 (+)
G48911 LOC108263518,LOC108262933 non-coding upstream 71306 18970798 ~ 18974710 (+)
G48908 NA non-coding upstream 78239 18967406 ~ 18967777 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding upstream 334721 18708032 ~ 18711295 (+)
G48482 NA non-coding upstream 344110 18673311 ~ 18701906 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding downstream 137207 19202230 ~ 19203687 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding downstream 201522 19266545 ~ 19267589 (+)
G49157 NA non-coding downstream 230059 19295082 ~ 19295293 (+)
G49214 NA non-coding downstream 335628 19400651 ~ 19400883 (+)
G49316 NA non-coding downstream 549694 19614717 ~ 19617317 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 9372 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 133821 18902438 ~ 18912195 (+)
dlg5a dlg5 other upstream 823966 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 2068987 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 2578666 16465939 ~ 16467350 (+)
grxcr1b LOC108263619 other downstream 149184 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 191041 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 276327 19341350 ~ 19356098 (+)
pprc1 LOC108263826,LOC108421584 other downstream 1317323 20382346 ~ 20392601 (+)
G49862 NA other downstream 1509950 20574973 ~ 20575479 (+)

Expression


Co-expression Network