calhm3 (calhm3,LOC108263123,LOC107578949,LOC102205420,LOC102305682)


Basic Information

Item Value
gene id calhm3
gene name calhm3,LOC108263123,LOC107578949,LOC102205420,LOC102305682
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13325893 ~ 13329493 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944444.2
gtttcaCCACCAGAGGACACTCTAAAGGTCTCTCTTTCAATagtccttttttatttctatcttAAATGCAGGCTGCTTCCTACACAATGTGCATTGTCCATATTCTTTTGTGTCGATCTGAATGAACTAATagggttgttgtttttttttattactaggCATGATGTTTTACTCACGCCAAAAACTCATTCATCTGGTTTAGAAGTTTCTCTTCAGTAAGCTTCTCTACAGTATGCCACTTCCTAATAATATTCAGAAAGGAGACCTTGTCCTGAAGAGTGAGACAGGCTGATTAATGAAAGTGTATTCATCTTTGCAGCTTTCACCCAGCATTCCCGGCTGTGCACTATTCACTTCACTCTGTATTTCTCGGTGTGTTTGGCTTCTGATGGTGTGGTTATGCACCTGTTGGGTGGAGCAGGGGAAGAGCCTAAGCTGAAGCACTCAGATGTGCTGACCTAAATCACTGCCTCCATCTACCATCTACCTCCACACGGTTTACTTAACGCCATGGACCTTTAGAACTGACAGGTATTCACAGACGGGGTCATTATGTCCGACtcgtatttattttattctgtaaaaaGAATGAATGGATTAAACCGGATTGTTTGTTTTGAGTGCTTTGAATATTGCTGGGCTGCATAAACCGCCTGCACagtcgacacacacacatacacacacacatacacacacacacactcctccactgCGTCTTTGTTTTTAGGTCCTCCACTCCGAACCGAGCTTTATTCTGATGGATCGCTTAAAGGTAGTTTTGCAATATTTCCAGTCGAATTCCGAGTCCATTTCCAACGGTATCTGCGTGGTGCTGGCTCTGGTAAGCGTAAAACTCTACACCAGCTTTGACTTTAACTGCCCTTGCCTGCCGCAGTACAATAAAATGTACGCACTCGGGGTGATGTTTGTTCCGCCGGTTATTCTCTTCTTACTCGGAATTTTGGTTAATCGGCATACTGGAGTGATGATGGAGGAATGGGCCAGACCCGCAGGCAAGAGGGCCAAAAATCCAGCTGTGGTGAAGTATTTGTTTTCAGCTATGATGCAGCGGGCCATGTTAGCTCCCATGGTGTGGATCCTGGTATCCTTACTGGATGGGAAGTGTTTCATATGCGCCTTCAGCATGAGTGTGGACCCTAAACACTTCAGCGGGTTCCCCAATGACACTGGTCTGGATCTGATCAGGATCATGGCTAAGGTGCCCTGCAAGGAAGACAGCATCTTTAAAGACAGCACTTTCCGGAAAGCTGTCTCACGCTATGTGCGCTGTTACTCTCAAGCAATAGGTTGGTCCATCCTTCTCTGCCTCATTTTTCTGGGTGCAGTGGCTCGAGTCATTAAACCATGCTTCAATCATGCCACGTTTCTTCAGACACGCTACTGGAGCAATTACTTGGATGTTGAGGCAAAGCTTTTTGATGAGACTTGTGTCCATCATGCCAGAGAGTTTGCAAAAAAATGTGTAGTGCATTTCTTTGAAAATATTGAGGATGATGTGATGCTCAGGCTGCCACTCTCCCCCAGCTTCAGATTTAAGAAAAGCCCTGATGAGACTGAGGAACAAGATGAGCGTCTCCATCATGTGACCAGGAAAGATCAGGTGGATCACTTGCTCGAATCCTGGTTCCAGTGCAGACCTGAGCTGGATGTGACCAAGATGGTGTACAGGCCCACTAAATGTATTACTTGGGAAGATCCTAATGGACATATACTTTACTCAGATGTGTGAAGTGACAGTAAAATAATATActagtgcatatatatatatatatgaaggaTCAAATGTAAGATATAAAACTGTattagatttgaaatgaatttagCTCTCAATTGTGTGGCCTCCTGTTGTAAGGGAAATTTCACAGTCATCCCAGAAAACCAAGTTCCTCTAAAACCTTTACCTTAAATCGAAAtaagtgaaatattttatattttgcttatatttctaaaaatgttcCACAAAGCCTCAAGTAAAGCCTCAAGTAAAACAATTACGCTACCTCTTTGTTACaacagttgtaaaaaaaaaatgatgtataaTAAAGATATTGCATAAagatatataaacaaaaatgaattttcTACACCTGACAATTGTATGAACTGCAAGGTTTGCATCAGACTTTTAGCCAGACAAGTTAGAAACCTTGCATGCTGAGATTTGCCTGTGCCAGGACTGGATTTGTTTAGTTTTGCATGGCTCTCCCCACACACATTACTCAGCATTGACATGCATATGAA

Function

symbol description
calhm3 Predicted to enable cation channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human CALHM3 (calcium homeostasis modulator 3).

NR:

description
calcium homeostasis modulator protein 3

GO: NA

KEGG:

id description
K19740 CALHM3; calcium homeostasis modulator protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944444.2 True 2262 mRNA 0.42 3 13325893 13329493

Neighbor

gene id symbol gene type direction distance location
LOC113543512 gsto1,LOC100304822 coding upstream 8268 13314595 ~ 13317625 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325 coding upstream 15624 13295232 ~ 13310269 (+)
ap3m1 LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495 coding upstream 88914 13229662 ~ 13236979 (+)
dusp13a dusp13a,LOC108263393,LOC107666542,LOC107743611,LOC107601810,LOC107552920,LOC107671562 coding upstream 270518 13040207 ~ 13055375 (+)
zgc:153981 LOC108262675,LOC108426808,LOC103035759 coding upstream 286556 13034660 ~ 13039337 (+)
calhm1 LOC108263121,LOC108263394 coding downstream 421 13329914 ~ 13333161 (+)
LOC113543782 LOC108263125 coding downstream 3848 13333341 ~ 13338334 (+)
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding downstream 9765 13339258 ~ 13346106 (+)
atoh7 atoh7 coding downstream 24076 13353569 ~ 13356432 (+)
pkd2l1 LOC108263119 coding downstream 29583 13359076 ~ 13366067 (+)
G45594 NA non-coding upstream 12672 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 13813 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 230012 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 273364 13052240 ~ 13052529 (+)
G45459 NA non-coding upstream 308293 13011946 ~ 13017600 (+)
G45640 NA non-coding downstream 46306 13375799 ~ 13375999 (+)
G45712 NA non-coding downstream 192346 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 193413 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 314627 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 559786 13889279 ~ 13889849 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 291543 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 320570 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 388591 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 682589 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 689487 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 168555 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 883876 14213369 ~ 14286542 (+)
cgas NA other downstream 1031874 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1643075 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2463913 15793406 ~ 15797204 (+)

Expression


Co-expression Network