cog2 (cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949)


Basic Information

Item Value
gene id cog2
gene name cog2,LOC107601846,LOC107666500,LOC107725477,LOC107743537,LOC107552949
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9129979 ~ 9143030 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944457.2
TCCGTGCGCGTGCCATGTTTGCGGAAGTAAATGAAGTGGCGCTTGGGTCTCAGTCGTTAGCTTGGAAATGGACCGAAGAGCTCCAGTGTATAAGCGATAAGACTTATTCGTGCTGTGGTTCTGTCGACGACGTTCAGAAGGATGAATTTACCGAAGGGACCCGACTCTTTGTGTTTTAACAAAGACGAGTTTATGAAGGATGATTTTGACGTGGATAAATTCGTGGCGGACTGCAGAAAGCGTGTCCAGCTGGAGGAGATGCGCCAGGACCTGGAGCACTATTACAGGCTCCTCAAAACAGCCATGGTCGAgctcatcaataaagattatgCTGATTTCGTCAACTTGTCCACAAATCTTgtggGAATGGATAAAGCTCTCAACCAGCTCTCTGTGCCTCTCGGCCAGCTGCGAGAAGAAGTGCTGAGTCTGAGGTCATCTGTCAATGAAGTTATCCAAGCCATAGACATACAGCTGGCCAAGCAAGATGACATTCAAAAGAAGAAGGTCTGTGTGTTAAGACTTATGCAAGTGGTTCGATCGGTGGAGAAGATTGAGAAAATCTTACACTCCCAAAATGCCCAAGATACCAGTTCTCTCGAAACAAGCAGTCCTCTGGTAGCGGGTCAGATTCTCGAGCGGATCGCCACCGAGTTCAACCAGCTGCAGTTCCATGCTGTCCAGAGCAAAGGCATGCCTCTGCTGGACAAAGTGCGCCCGAGGATCGCTGGTATCACTGCCATGCTGCAGCAGTCCCTCGAGGGTCTGCTTATTCAGGGCTTACAAACATCAAACGTGGCCATGGTGCGTCACTGCTTGCGCACTTACGCCACTATCGACAAGACCAAAGACGCCGAGGCCCTGGTGGGACAAGTCTTAGTCAAACCATACATGGAAGAgGTCATAACTGAACAGTTTGTGAAGTCCAGCCCTAATGGCCTTCAAATGATGTACGCGAAGGTTCTGGAGTTTGTGCCTCATCATTGCCGACTGCTCCGGGAGGTCACAGGAGGGACCGTTTCTAGTGACAAAGCTGACATTGTTCCTGGATATGACTTCCTTGTTAACTCTGTCTGGCCGGAGACCATTAAAGGCGTTGAAGGCAGAATCCCTTCTCTTTTTAATCCTGGCAATCCAGACGCTTTTTACGagAGGTACTGCATTAGCATGGACTTTGTGCAGAAGTTTGAAAGGCAGTGTGGATCTCAGGCGAGTGTAAAGAGACTCCGAGCACACCCGTCCTATCAAAGCTTCCACAACAAGTGGAACCTCCCTGTGTACTTTCAGCTGCGGTACAAGGAGATTGCTGGATATCTGGAAAATGCCACTGCAGATGGATTAAAAGCAGCTCCAGcgGGGGGCCACTACCGGCTACAGGTGACTGACGTGTTATGGAGCTGTGTATGCAGGTGTTGGGCAGAGCACGTCTACCTGCCCCCTCTCGCTCACCGATTCTGGAAGCTAACGCTGCAGCTCCTCTCACGTTATGCCACCTTTCTCACTGAGGTCCTAACAAAAACCCCACCTTCAGAAACCACCAAAGAAGCCGCAAGACCTCTCCCAAGCTCTGCCTCCTCCACGTCGAGCCGCACCTCTCAGGACGCAGACAGCGAGAGCGGTGGTCCTACAGTCCTGTCCACCAAACAGCTTGTTTTCATTGCTGCTGATGTGGATCAGTTACTGGAGCAGATTCCTGACATCTCTAATATGGTGAAGGAGAGATTGCAGGAAATTGGATTCCAAAACCTTGCACTTGTGTCAGATGCCTTGGACGACTCTAAAGCAGCTTTGTCCGGATGCATCCCAACACTGAACAGCAGAATGACTCAGAACCTGACAGAGAGGAGCTTCCGCTTTCTGAAAAATGCATCAGAAGTTCCCCGACTTTACAGAAGGACCAATAAGGAGGTGCCCACCAGAGCCTCAGCTTATATGGATAATGCTCTGCAACCCCTACATCAGCTGCTCACTGACTCCACAGGAGTGGTGAAGGCCTCCATCATCCAGGAGTGGCTCCGTGTTGCACTTTCAGACTGCACACACAGATATTTTGAAACCATATCTGATGTGCTGAGCTCTGTGCGGAAGATGGAGGAGAGTCTGAAGAGGCTGAAACAGGCGAGAAAAACTGCCACAACAAGCACAGCAGGAGCCAACGCTGGGCCCTCAGATGATAGCAAGATCCGTCTGCAGTTGGCCCTGGATGTGGAGTACCTTGGAGAGCAGATTCAGAAGATGGGTCTCCAGCCGAGCGACATCACCATGTTCTCCGCTCTGCTGGACCTGGTGCGGGAGGCGCGGGATCTCGCCACAGCAGAGCCGGCTGGCTCCTAGGGCTCGCCGTTCGGGTTGACAGGAATTTCCTGATCTACAGCACTTCAGCAGGCAGATGCTCACAGAGGTTTCAGGGAAAGCAAAAAAGGCTTCCCCAGTGATTCACAGCCATGCTGCTCTCAGTGAAGTTATAAGGTAAAAATCACAGACCATTGAGCTGTGAGCTCTGCCTGTGATGAAGAAGCACACTACAAGAATGTGTCCATGAGGTcagatgttatttattgttaaatccTATTGGATAATTTGGGAATGATAAGGTTAAATAGCAGTGGTCAAAGCGATTGATAATGATATGCAATGTAAATTCTGAATATAATGATTGTTTGGAATGTACTGGCAAGGGCCTACTATGCCATTATGTCTTATAACCTGTCATtcacagttacaaaaaaaattgatatgACAGCTTGTGACTTGGACTCTGATGTTATGAAAATGATGTCATAAGATTAAGCACTGCGTGacagaattaattaaatatattttctgccTCAGTGCCTCGTCTGAGGCGAGCTGCCAAGTTGAAGCTCAGTGCTCTCTAGAACCTGACTGGATGCTTCTTGCatttcacacaccatgtcaacATGCTGTTATCATTCACATGTTCTACCGGACAAGGCTGAGACTACTGTAACTTTTCAACATATTCTTCACAATAAAAGGCTTGGAAAGTGATGGCCCA

Function

symbol description
cog2 Predicted to be involved in Golgi organization and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIq. Orthologous to human COG2 (component of oligomeric golgi complex 2).

NR:

description
conserved oligomeric Golgi complex subunit 2-like isoform X2

GO:

id name namespace
GO:0007030 Golgi organization biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20289 COG2; conserved oligomeric Golgi complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944457.2 True 3019 mRNA 0.49 18 9129979 9143030

Neighbor

gene id symbol gene type direction distance location
galnt2 galnt2,LOC107676591,LOC107725470,LOC107666462,LOC107743534 coding upstream 34296 9001659 ~ 9095683 (+)
si:ch73-109d9.1 LOC108262808,LOC107556808,LOC107556784 coding upstream 148106 8968989 ~ 8981873 (+)
si:ch73-109d9.3 LOC108262807,LOC103132489,LOC106930291,LOC106944652,LOC102224490,LOC103464124,LOC105931504,LOC107393648 coding upstream 162049 8963903 ~ 8967930 (+)
si:ch73-109d9.2 LOC108262783 coding upstream 168287 8956126 ~ 8961692 (+)
vwa11 LOC108262774 coding upstream 184732 8932174 ~ 8945247 (+)
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding downstream 9300 9152330 ~ 9211293 (+)
rgs17 rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476 coding downstream 173761 9316791 ~ 9338616 (+)
map3k21 LOC108263591,LOC108434955,LOC107676554 coding downstream 239608 9382638 ~ 9408518 (+)
prim2 prim2,LOC108263846,LOC108443732,LOC107676604,LOC107666539 coding downstream 278036 9421066 ~ 9487539 (+)
si:dkey-103j14.5 LOC108263510,LOC108443735 coding downstream 500779 9643809 ~ 9666593 (+)
G42848 NA non-coding upstream 114938 9012486 ~ 9015041 (+)
G42833 NA non-coding upstream 175953 8953522 ~ 8954026 (+)
G42792 NA non-coding upstream 259053 8812836 ~ 8870926 (+)
G42783 NA non-coding upstream 358916 8769324 ~ 8771063 (+)
G42782 NA non-coding upstream 362376 8764611 ~ 8767603 (+)
G43137 NA non-coding downstream 81333 9224363 ~ 9224593 (+)
G43186 NA non-coding downstream 201025 9344055 ~ 9347236 (+)
G43330 NA non-coding downstream 345729 9488759 ~ 9488959 (+)
G43337 NA non-coding downstream 351947 9494977 ~ 9495210 (+)
G43360 NA non-coding downstream 383831 9526861 ~ 9527159 (+)
trnak-cuu NA other upstream 660098 8469624 ~ 8469881 (+)
G42685 NA other upstream 663667 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 1458569 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 1499839 7620545 ~ 7630140 (+)
G42075 NA other upstream 1908956 7203950 ~ 7221023 (+)
sprn sprn other downstream 1409229 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 1451544 10594574 ~ 10608704 (+)
dntt dntt other downstream 1956563 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 2539834 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 2563905 11706935 ~ 11707005 (+)

Expression


Co-expression Network