hmgb2a (hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400)


Basic Information

Item Value
gene id hmgb2a
gene name hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3838726 ~ 3840862 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944471.2
ccagccaatcagattgagGCTTCGAGGGAGGAGCCGTTGGTGCACTCTGATCAAGTTTGTACGCCCTGCACCACATACAAAACAGCACCTGAGAGAAGTTCTGCTTGTACTGAACTGAGTGAATATTCAACACGTACAGACTTTGAAAGTTATGGGGAAAGATCCGAATAAGCCGAGAGGGAAGACTTCGTCCTACGCCTTCTTTGTGCAGACATGCCGGGAGGAGCACAAGAAGAAGCACCCGGACACGGCGGTCAACTTCTCCGAGTTCTCCAAGAAATGCGCCGAGAGATGGAAGACCATGTCTCCTAAGGAGAAATCAAAGTTTGAGGAAATGGCCAAAAACGACAAGGTACGTTACGACCGGGAGATGAAAAACTACGTGCCACCCAAAGGCGCAAAgaaagggaagaagaagaaggaccCGAACGCACCCAAGAGACCACCATCTGCATTCTTCATCTTCTGCTCTGATCACCGGCCAAAGGTGAAGAGCGAGAACCCGGGCATCTCTATCGGTGATGTTGCGAAGAAGCTGGGTGACCAGTGGTCCAAACTATCAGCCAAGGATAAAACTCCGTACGAGCAGAAGGCCATGAAGCTGAAGGAGAAATACGAGAAgGACATTGCTGCGTACCGCGCCAAGGGAGGAAAGACAGACGGTGCGAAGAAAGGCGGACCAGGGCGGCCAGCGGGCAAGAAGGCAGAAGTCACAGATGATGACGATGAAGAcgaggatgaagaggatgaggaggaagacgACGACCtggatgatgatgacgacgagTAAATTTATCAGGaattttgtgttgatttgtttgCAAAGCAATGTGAAAAgcgtttctttttaaaaaaataaataactttttt

Function

symbol description
hmgb2a Predicted to enable DNA binding activity, bending. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in central nervous system; gut; neuromast; ovary; and pectoral fin bud. Orthologous to human HMGB2 (high mobility group box 2).
hmgb2 Enables DNA binding activity; signaling receptor binding activity; and transcription coactivator activity. Involved in several processes, including positive regulation of myeloid cell differentiation; regulation of nucleobase-containing compound metabolic process; and response to bacterium. Located in several cellular components, including condensed chromosome; nuclear lumen; and perinuclear region of cytoplasm. Part of protein-containing complex.

NR:

description
PREDICTED: high mobility group protein B2 isoform X2

GO: NA

KEGG:

id description
K11295 HMGB2; high mobility group protein B2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944471.2 True 870 mRNA 0.49 5 3838726 3840862

Neighbor

gene id symbol gene type direction distance location
hand2 hand2 coding upstream 32897 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 125890 3700579 ~ 3712836 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding upstream 170234 3644478 ~ 3668492 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding upstream 196978 3572427 ~ 3641748 (+)
gpm6ab gpm6a,gpm6ab,LOC107670876,LOC107737106,LOC107752222,LOC107676686 coding upstream 335606 3434345 ~ 3503120 (+)
scpp1 LOC108262830 coding downstream 642686 4483548 ~ 4487275 (+)
tnip2 tnip2 coding downstream 654770 4495632 ~ 4500384 (+)
prmt9 prmt9 coding downstream 1042134 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 1759023 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 1796005 5636867 ~ 5674128 (+)
G40287 NA non-coding upstream 153521 3683343 ~ 3685205 (+)
LOC117596918 NA non-coding upstream 313605 3515101 ~ 3525121 (+)
LOC117596855 NA non-coding upstream 435620 3400795 ~ 3403106 (+)
G38962 NA non-coding upstream 1407639 2427812 ~ 2431087 (+)
G38948 NA non-coding upstream 1412126 2411201 ~ 2426600 (+)
G40374 NA non-coding downstream 23834 3864696 ~ 3865000 (+)
G40586 NA non-coding downstream 289253 4130115 ~ 4130322 (+)
G40590 NA non-coding downstream 386331 4227193 ~ 4227431 (+)
G40591 NA non-coding downstream 387320 4228182 ~ 4228548 (+)
G40592 NA non-coding downstream 388530 4229392 ~ 4229622 (+)
LOC113545357 NA other upstream 4100 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 1747383 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 1841461 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 2614125 1194219 ~ 1224601 (+)
trmo trmo other upstream 2650132 1165845 ~ 1188594 (+)
nr3c2 nr3c2,LOC107598757 other downstream 823454 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1422720 5263582 ~ 5357860 (+)
G41047 NA other downstream 1477672 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 2054569 5895431 ~ 6228685 (+)
G42075 NA other downstream 3363088 7203950 ~ 7221023 (+)

Expression


Co-expression Network