kifbp (kif1bp,LOC107676599,LOC107743600)


Basic Information

Item Value
gene id kifbp
gene name kif1bp,LOC107676599,LOC107743600
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9739790 ~ 9745528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944483.2
GCTACTAGCCGTTACGTCATTTGAGCACAACATGGCGTCCACCAGCAGTCGAGAATGGAGGTCGGTGTGCGAGAAATTTCGCAGCGCTCAAGAGCTTTCCGAAATAGAATCGCGAAAAGATCCTGAAAACGAGCCTTTCCGCTCTAAATATAAAGCCAGGGAGCTGCTGAAGGAGATTTACTGCATGGTAAAGAATTTCGACGTAGACGACAGTGAGAATGAGGACCGAGAAACGGACGGTCAGTCAGAGGAGCCAGGAGACGGGGAGGCGGTACATGGAGGAGTTAATAAAGCGCACGCAGGCGACTCTCAAGCCGGACTCCGAGCCGCCAAGCTCGGCGTGATTGACTATCACCTGGGAGTGAACCATATCGAAACCGAGGAGCTCTCCGCTGGCGAAGAGTACTTAATGAACTGCATGAAATTACTGGAGGAGTGTACTGTAACACGGGAAAACGTCTCGCTGTTCATACAAGTCAGGAACCAGCTTGGCATCTTATGGGCCGGACGTGACGAAACCGAGAAAGCTCAAGGCTTTTTAGAAACGGCGGAGTCCATTTATGTCCAGTACATGAAAGAGGATGGCCAACCACCACTGGATTTGGTAGATTTCTTTGTGCTAGAGGAAGATGCACCATCCCAAcaagagagaatgaggagATTTGAAATggcatacacgcacacactttaTTATCTGGCTCAAGTGTATAAAAATCTGGGTCAGTATGAGAGAGCAGGACAGTACTGCCACAGCACATTGCAGAGGCAGCTGAAGTTCAGCCAGTTTGTGCCACTCGAGTGGGCCATCAATGCTGCCACTCTGTCACAGTATTACATCACCAAGACGCGATACATGGAGGCACGACACTGTTTGGCTGCAGCTAATGTCATTGCTGGCCTGGCTGGAGAAGTCCCTTCAGAAGCTGCTGCCAAAGAAAGTGAAGCTGAATATGAAAAACGTGAGCAATTGTGTCAGAAAAGAGCTGAAATTGCAAGGTGCTGGATCAAATATTGCCTTAATCTGCTACAAGATTCTAAAAAGCTTTTGGAGGACAACATTGGAGAGTTAGACCTGGACCGACAGGAAGAGCTGCAGAGAGCACGACAGGATGAGGAGGAGTTAAAAGAGATaggaagaaaaacagcagtTCTCTTTGATTCTGCCGACACGTTCGATTCAATTTGCAGCCAGGAGGAGAAAGTGAGCTGCATATATCCATTAAACTTTGAAGAAGCCCGTGCCATCTTTCTGGTGGGTCAAAGCTACGTGACGCAGGCCAAGGAGTATTTCGAGATGGATGGTCACGTAACAGACCACATTGAGATCCTTCAGGATCACAGCGCTCTTTTTAAGGTCTTGGCATTTTTTGAGGAGGACCTGGAGCGCCGCTGCAAGATGCACAAGCGCCGCGTGGACATGCTCGAGCCCATCTGCAAGGACCTGAACGCTCAGTACTACTTACTGATCTGCCGACAGTTGCAGTTCGAACTCGCTGAGACCTTCTACGAAATGATGGACTTAAAACTGGCCGTGGCTGAAAAACAGGACCAGCCAGACGCACACACCATAAAGAAGTTCAACCACTTGTGCTTGGCATCCATCAAGTACTACCAGATGTTCCTGGACTCCATCCGCTCACCAGAGGGCAAGTTTCCAGAAAAACTCGAAGACGATCTGCTGAGACCGGCACTGGTGGCTAAGTTTCGTATTGCTCGACTTCAGTCCAAGATCATCTCAGGAAACTTGGCCACTCAACTGGAGAATCTCAGCCTCTCACTGGAGTCATACAACTTTGTTGTGCAGTATTGCGAAGAGCACCCAGAAGCCAAGAAGGCTGTGGAAACTGAACTGGAGCTGAGTGAAGAAATGGTGTCCCTCCTTCCTATGAAGATCAATAGAATACAGTCCAGAATGGCCTCCTCTAACTAAGATGAAATAGTGATCACTTTGTAAAGATGATCACTGGCTGTAATGAGAGCTGACATGGAAATAAAACTACTTCTGTTCCACTTTAACTCTAAACCGTCATTACAGTAGGTCAGAATATATACACTTACCAGTCTCCATATTAGTGACACCCTATATTCCCAATCTGGTCTAGCTGCCCTTTAATTCATCTTTGCTTGTACAAACCTGGGAGCAGACTAACTTTGAGAGCTTTTTCCTGTACTTTCCTGGCTGAACTGCATGCCTCAATTAtcactaatttatttaatggCACAGTGCATTGTGATGTCTATCACATCTGTTCAAGATAGcaatgttaaatataatgtaactgttaaatgcatttatgcataataataaatgaatttgttttcgtta

Function

NR:

description
PREDICTED: KIF1-binding protein

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0048929 efferent axon development in posterior lateral line nerve biological_process
GO:0006839 mitochondrial transport biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K23845 KIFBP; KIF-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944483.2 True 2326 mRNA 0.47 7 9739790 9745528

Neighbor

gene id symbol gene type direction distance location
si:dkey-103j14.5 LOC108263510,LOC108443735 coding upstream 73197 9643809 ~ 9666593 (+)
prim2 prim2,LOC108263846,LOC108443732,LOC107676604,LOC107666539 coding upstream 252251 9421066 ~ 9487539 (+)
map3k21 LOC108263591,LOC108434955,LOC107676554 coding upstream 331272 9382638 ~ 9408518 (+)
rgs17 rgs17,LOC108262465,LOC108434957,LOC107552952,LOC107725462,LOC107743539,LOC107666476 coding upstream 401174 9316791 ~ 9338616 (+)
phactr2 phactr2,LOC107601847,LOC107552951,LOC107666519,LOC107676579 coding upstream 528497 9152330 ~ 9211293 (+)
vps26a vps26a,LOC107666532,LOC107676600 coding downstream 18105 9763633 ~ 9772357 (+)
supv3l1 supv3l1,LOC107725491,LOC107743553,LOC107676608,LOC107666535,LOC107601833,LOC107563062 coding downstream 28404 9773932 ~ 9783035 (+)
hkdc1 hkdc1,LOC103047009,LOC106612435,LOC107743550,LOC107676583 coding downstream 38978 9784506 ~ 9795574 (+)
hk1 hk1,LOC107676584,LOC107743551 coding downstream 51720 9797248 ~ 9815124 (+)
tspan15 tspan15,LOC106589828 coding downstream 86274 9831802 ~ 9864941 (+)
G43422 NA non-coding upstream 68050 9668611 ~ 9671740 (+)
G43360 NA non-coding upstream 212631 9526861 ~ 9527159 (+)
G43337 NA non-coding upstream 244580 9494977 ~ 9495210 (+)
G43330 NA non-coding upstream 250831 9488759 ~ 9488959 (+)
G43186 NA non-coding upstream 392554 9344055 ~ 9347236 (+)
G43615 NA non-coding downstream 126018 9871546 ~ 9871819 (+)
G43646 NA non-coding downstream 313998 10059526 ~ 10077649 (+)
G43651 NA non-coding downstream 325639 10071167 ~ 10072098 (+)
G43663 NA non-coding downstream 348207 10093735 ~ 10101531 (+)
LOC117596896 NA non-coding downstream 415971 10161499 ~ 10163956 (+)
trnak-cuu NA other upstream 1269909 8469624 ~ 8469881 (+)
G42685 NA other upstream 1273478 8465747 ~ 8466312 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 2068380 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 2109650 7620545 ~ 7630140 (+)
G42075 NA other upstream 2518767 7203950 ~ 7221023 (+)
sprn sprn other downstream 806731 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 849046 10594574 ~ 10608704 (+)
dntt dntt other downstream 1354065 11099593 ~ 11207862 (+)
LOC113545306 cfap46 other downstream 1937336 11682864 ~ 11745224 (+)
trnag-gcc NA other downstream 1961407 11706935 ~ 11707005 (+)

Expression


Co-expression Network