ucp1 (ucp1,LOC107703842)


Basic Information

Item Value
gene id ucp1
gene name ucp1,LOC107703842
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6375569 ~ 6383460 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944523.2
CTCAGAGTGTCTGCAGAAATGAATTATATAAAGAGGGAGAGATTAATCTTCCTTTCTCAAGGTTTAATCCATACCTTCTGCTCCAGACTCAAAAGGTCCACCATCTCCAAAGGGATTACCTGAGGACTAGACTGAAAATCTGTGATCATGGTGGGACTGAAGCCATCTGATATTCCTCCTCCTTTGGGAGTGAAGGTACTGAGTGCAGGTACAGCCGCCTGCATCGCCGACCTTGTCACCTTCCCTCTGGACACAGCTAAAGTCCGGCtgcagATCCAGGGTGAGAAGGTGGCAGTAGAAGCTGCCAAGAACATCCGTTATCGTGGTGTATTTGGGACGATCAGCACCATGGTGCGGACCGAGGGGCCTCGCTCGCTCTATAACGGCCTGGTGGCTGGCCTGCAGAGACAGATGGCCTTTGCATCCATACGAATTGGCCTCTACGACAACGTCAAGAGCTTCTACACAGGAGGCAAAGACAACCCTAATGTAGGTATCCGGATCCTGGCCGGCTGCACCACAGGGGCGATGGCCGTTTCCATGGCTCAGCCTACAGACGTAGTGAAGGTGCGCTTCCAGGCCCAGATGAACCTGCAGGGAGTCGCTCGTCGCTACAACGGGACCATGCAGGCGTATAGACAGATCTTCTTACAGGAGGGCCTCCGTGGACTCTGGAAAGGAACGCTACCCAACATCACCAGGAATGCCTTGGTCAACTGCACAGAGCTTGTGTCTTATGATCTTATCAAAGAAGCCATTCTTGGACACAAGCTGCTGTCAGATAACCTGCCGTGTCATTTCGTCTCTGCGTTCGGGGCTGGATTCATCACCACCGTCATCGCCTCTCCTGTGGATGTGGTGAAGACTCGCTACATGAACTCTCCTCCTGGTCAGTACAAAAGTGCCATCCACTGTGCCTGGACCATGATGACCAAAGAAGGACCTACAGCCTTCTACAAAGGATTTGTGCCTTCCTTTCTCAGACTGGGATCATGGAACATCGTCATGTTTGTGTCATTCGAGCAGCTGAAGAGAGCCATGATGGCCTCTAAAAAGAAGATGGAAGCCACCATGTAGAGAAAGACTGCTGCTCCTATGTTAAAtgcactgactcactgaacaaGCTGCCGTTTGTGCTGCTGAAGGAAAAATGATTGACAAAAATCAGCAAAAGCAGGTGGCCAAATATTTAACTTATTAGTCTGAACtaaaggaaaagaggaagaacgCTCACCCTAAGATTTACTCTATACAGGGAATTGAGAGAGATGAAAGCATAGCCAGTTCATGCTTACTGCATGATAATAATTATCTCTCAgagtctggtgtgtgtgtgcgtgcgcgtctGAACCTGTGTGTATAATGCTTTATGATGTACAGGTCCTGTGGTGTTTGGTAGCTGGAAGATGATGAAAAGCCACATTCTgtactttgcctttttttgctAAACTACTGTACGTACAACGTGGCTTTACACACAAAACTGTCCataagctgtcttttttttataattattattaatactaattaatcctttgtttaaaaaaggacaatgtgtttttaatttatgttgaactgtttactgtatgtttacTCACCGCTCGATTGCTGTAAGCTTGCAGGAGAAACGTGCGAGCCACACTGTAAGCTATGACAGCAAACAACCTGAAAGGCATCAAAGtccatttctaaaataaatacatatttaggTAAAGCACACTGAATGCTTTACAACTTCCA

Function

symbol description
ucp1 Predicted to enable oxidative phosphorylation uncoupler activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; heart; liver; median fin fold; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human UCP1 (uncoupling protein 1).

NR:

description
PREDICTED: mitochondrial brown fat uncoupling protein 1

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15103 UCP2_3, SLC25A8_9; solute carrier family 25 (mitochondrial uncoupling protein), member 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944523.2 True 1740 mRNA 0.46 7 6375569 6383460

Neighbor

gene id symbol gene type direction distance location
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding upstream 4541 6326860 ~ 6371028 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding upstream 80092 6265930 ~ 6295477 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding upstream 518339 5843566 ~ 5857230 (+)
LOC113542482 NA coding upstream 624537 5733447 ~ 5751032 (+)
LOC113542496 LOC108263485 coding upstream 645907 5718697 ~ 5729662 (+)
gprin3 LOC108262861 coding downstream 15434 6398894 ~ 6405603 (+)
zgc:154142 LOC108262754 coding downstream 34802 6418262 ~ 6463985 (+)
fam13a fam13a coding downstream 82606 6466066 ~ 6546055 (+)
ppm1k ppm1k,LOC108262962,LOC107706815,LOC107675910,LOC107594437,LOC107729359,LOC107684283 coding downstream 278918 6662378 ~ 6680286 (+)
abcg2d LOC108261237,LOC108262954,LOC108262959,LOC108441148 coding downstream 297681 6681141 ~ 6699519 (+)
G41345 NA non-coding upstream 71464 6303897 ~ 6304105 (+)
G41331 NA non-coding upstream 112266 6260605 ~ 6263303 (+)
LOC117596795 NA non-coding upstream 113138 6239367 ~ 6262431 (+)
G41299 NA non-coding upstream 499147 5876148 ~ 5876422 (+)
G41232 NA non-coding upstream 556122 5818548 ~ 5819447 (+)
G41600 NA non-coding downstream 135599 6519059 ~ 6552115 (+)
G41651 NA non-coding downstream 201395 6584855 ~ 6585448 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding downstream 215243 6598703 ~ 6598967 (+)
G41654 NA non-coding downstream 218452 6601912 ~ 6602163 (+)
G41752 pkd2 non-coding downstream 278822 6662282 ~ 6702806 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 146884 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1017709 5263582 ~ 5357860 (+)
G41047 NA other upstream 1033819 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1603965 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 2540943 3831867 ~ 3834626 (+)
G42075 NA other downstream 820490 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1237085 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1265738 7649198 ~ 7671410 (+)
G42685 NA other downstream 2082287 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 2086164 8469624 ~ 8469881 (+)

Expression


Co-expression Network