LOC113545271


Basic Information

Item Value
gene id LOC113545271
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12601078 ~ 12603749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944537.2
GTTTATGCCCTGCCTTTTGTTTCCTTGTGGCTCATGTAACCACTCTTGGagttACAGtcaacaacatcatcatgaAGGTTTGGACTGTGTGTTTGCTGGTGTGTGCTGCTTTTACTCTGAGGACTGCCACAGCTGCAGCAATTGTGACTGAACCTGAGCAGGATCAGAAACTTCCAGGGGAAGCTACTGAACTGGCTGTTGAGGAGTTGACTGATGCAGTTCAGGATAAGGAGGAAGCTCTCAAGACAGATGCTGTTGCTGAAGTTAAGTCAGGCTACTGTCCACATGGATGGATTCAATATGGATCACGCTGCTTTCGACTCATAAGGTCAAGTCAGACCTGGCTCAATGCTGAGGCACAGTGTGCAGCTGAACAGGCAAGACTGGCATCTGTACGTAACCTTGGGGAACATAAATTCCTGCAGAGTTTGCTTGAAATGGCTGGTTTATCACAGGCTTGGATTGGTGCTTACTACTTCCAGggAGCATGGCTATGGGTTGACACAGCTCGGTTCTACTACACCAACTGGTACTCTCTGAGTGGTGTGTCCAGCTGCCCATGCGCCTTCATGAGGAACAATGTTGGCTGGTCTAACGCTCACTGTGAAAGTGGATATGCATTCTTCTGTGCTATTGACCTTAATACATGTTAGAGGACATGAATGAGTATTTGTTTATCATTTTGAAGCTGATATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944537.2 True 698 mRNA 0.47 9 12601078 12603749

Neighbor

gene id symbol gene type direction distance location
frmd6 frmd6 coding upstream 6934 12573987 ~ 12594144 (+)
tmx1 tmx1,txnd1,LOC105015420,LOC103371388 coding upstream 78332 12517553 ~ 12522746 (+)
atl1 atl1,LOC107736665,LOC107705445,LOC107682422,LOC107602974,LOC107553217 coding upstream 182130 12403949 ~ 12418948 (+)
dmac2l atp5s coding upstream 260086 12330050 ~ 12340992 (+)
LOC113544275 LOC108262946,LOC108426851,LOC107708194 coding upstream 458049 12134099 ~ 12143029 (+)
LOC113545096 NA coding downstream 3780 12607529 ~ 12609839 (+)
LOC117596891 NA coding downstream 9293 12613042 ~ 12615207 (+)
trnat-ugu NA coding downstream 64065 12667814 ~ 12667886 (+)
abcb10 abcb10 coding downstream 98701 12702450 ~ 12712789 (+)
acta1b act2,actc1a,LOC105907633,LOC108430668,LOC107678759 coding downstream 110882 12714631 ~ 12717322 (+)
LOC113542444 NA non-coding upstream 102059 12489514 ~ 12499019 (+)
G45040 NA non-coding upstream 285208 12315533 ~ 12315870 (+)
G44972 NA non-coding upstream 442850 12156248 ~ 12158228 (+)
G44974 NA non-coding upstream 444956 12154384 ~ 12156122 (+)
G44970 NA non-coding upstream 456676 12144117 ~ 12144402 (+)
G45153 LOC108263325,LOC108267695,LOC108440124,LOC108426833,LOC104952642 non-coding downstream 44146 12647895 ~ 12648406 (+)
G45170 NA non-coding downstream 70659 12674408 ~ 12674623 (+)
LOC117596851 NA non-coding downstream 129683 12733432 ~ 12739226 (+)
G45351 NA non-coding downstream 207170 12810919 ~ 12811250 (+)
G45360 NA non-coding downstream 217107 12820856 ~ 12821389 (+)
LOC113544122 NA other upstream 834664 11745748 ~ 11766414 (+)
LOC113545306 cfap46 other upstream 855854 11682864 ~ 11745224 (+)
trnag-gcc NA other upstream 894073 11706935 ~ 11707005 (+)
dntt dntt other upstream 1393216 11099593 ~ 11207862 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other upstream 1992374 10594574 ~ 10608704 (+)
trnay-gua NA other downstream 32571 12636320 ~ 12636406 (+)
LOC117596823 NA other downstream 35568 12639317 ~ 12643304 (+)
spef1 spef1 other downstream 325810 12929559 ~ 12937302 (+)
col17a1b LOC108263226,LOC108426809 other downstream 378657 12982406 ~ 13005323 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other downstream 428301 13032050 ~ 13034350 (+)

Expression


Co-expression Network