noto (LOC108263580)


Basic Information

Item Value
gene id noto
gene name LOC108263580
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19374309 ~ 19375581 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944643.2
ACGGAAGCCTGAGCAACAGAGAGCCACGGATAACTGTctgctttgttttctttgctttccCGTTCTCCCTGCAAAACTCAAGAGGAAATCATGCAGATCCCTGCACGGCCTCATGGACCCTACGGATTTTCAGTGCGTCCCCAGGCTGCTCTCCACCCGGACTATGCCAGCAGTGCGTGTGTGGCCACGCACAATCCAGCAAAACCCAGCGCGGGGAAATCGTTCACCATCGACGCACTTCTCGCCAAGCCTGACAACACCAAGACGAGTCCATTTCAGGGCTCACTGAACCCTGCGCCAACACCACCAGGTCTCTTTCTCCATGCCGGACAGATGTGTCCTCCACTTCCTCACTACCTGTACAGCCCGGCTATGATGCACACCCAATCCAGCTACCCAGTCTACTGCTGTCCGCCCTACGGATACCAGACAACATGCCCAGGAACTGTTTACTCACAAGGTGCCACACTGTCTAAAGCTGGAGTTCACTCGCACTACAAGCACAAAGGAGGGAAATCAAAGCGGATGCGCACCAGCTTCACCAACGAGCAGCTGTCCCGCTTGGAGAAGGAGTTTGCGCGCCAGCAGTATATGGTGGGATCAGAGCGCTTCCTGCTCGCATCCGCACTCCAGCTCACCGAGGCGCAGGTCAAAGTGTGGTTCCAGAACAGGCGCATTAAGTGGAGAAAGCAGAGTCTTGAGCAGCAGCAGGCCAAACTTGCCAAACTGGGACTCGCGGTTCCTCCCAAAAGCCCTGGATCTCAAGGCCGGGAGGATGAGGGAGACGAGGACGAGCACGATTTCACAGAGGACTCAGATGTTGACATCGATGACTCCCTGCACGCCTGAGAAGCGTTACAGTGACTTTACGAGCCAACACTGCTTTTTGTACATATTTGGAATGCTACATATTTTGTAGTACCACCTtttgtataaaagaaaaaagaaaagaaaaaatccaaTATATTTAAGTAATAGATAGCTATATATTTAAGACCTTTCTGTATTATTGCTCTTATCAGAGTACAGTTCCTTCCTTTGTACACGTTTGTATGGATGAAAT
>XM_034303050.1
ACGGAAGCCTGAGCAACAGAGAGCCACGGATAACTGTctgctttgttttctttgctttccCGTTCTCCCTGCAAAACTCAAGAGGAAATCATGCAGATCCCTGCACGGCCTCATGGACCCTACGGATTTTCAGTGCGTCCCCAGGCTGCTCTCCACCCGGACTATGCCAGCAGTGCGTGTGTGGCCACGCACAATCCAGCAAAACCCAGCGCGGGGAAATCGTTCACCATCGACGCACTTCTCGCCAAGCCTGACAACACCAAGACGAGTCCATTTCAGGGCTCACTGAACCCTGCGCCAACACCACCAGGTCTCTTTCTCCATGCCGGACAGATGTGTCCTCCACTTCCTCACTACCTGTACAGCCCGGCTATGATGCACACCCAATCCAGCTACCCAGTCTACTGCTGTCCGCCCTACGGATACCAGACAACATGCCCAGGAACTGTTTACTCACAAGGTAAGCATGGAGGTGCCACACTGTCTAAAGCTGGAGTTCACTCGCACTACAAGCACAAAGGAGGGAAATCAAAGCGGATGCGCACCAGCTTCACCAACGAGCAGCTGTCCCGCTTGGAGAAGGAGTTTGCGCGCCAGCAGTATATGGTGGGATCAGAGCGCTTCCTGCTCGCATCCGCACTCCAGCTCACCGAGGCGCAGGTCAAAGTGTGGTTCCAGAACAGGCGCATTAAGTGGAGAAAGCAGAGTCTTGAGCAGCAGCAGGCCAAACTTGCCAAACTGGGACTCGCGGTTCCTCCCAAAAGCCCTGGATCTCAAGGCCGGGAGGATGAGGGAGACGAGGACGAGCACGATTTCACAGAGGACTCAGATGTTGACATCGATGACTCCCTGCACGCCTGAGAAGCGTTACAGTGACTTTACGAGCCAACACTGCTTTTTGTACATATTTGGAATGCTACATATTTTGTAGTACCACCTtttgtataaaagaaaaaagaaaagaaaaaatccaaTATATTTAAGTAATAGATAGCTATATATTTAAGACCTTTCTGTATTATTGCTCTTATCAGAGTACAGTTCCTTCCTTTGTACACGTTTGTATGGATGAAAT

Function

NR:

description
PREDICTED: homeobox protein not2-like

GO:

id name namespace
GO:0032835 glomerulus development biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0003160 endocardium morphogenesis biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0014028 notochord formation biological_process
GO:0021982 pineal gland development biological_process
GO:0030325 adrenal gland development biological_process
GO:0001947 heart looping biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944643.2 False 1063 mRNA 0.51 3 19374309 19375581
XM_034303050.1 True 1075 mRNA 0.51 3 19374309 19375581

Neighbor

gene id symbol gene type direction distance location
emx1 emx1,LOC108263581,LOC108441775,LOC103045183,LOC107567848,LOC107678523,LOC107733702,LOC107718448 coding downstream 11329 19357615 ~ 19362980 (-)
LOC113540998 LOC108262906 coding downstream 71767 19301205 ~ 19302542 (-)
mavs NA coding downstream 79608 19287108 ~ 19294701 (-)
pank2 pank2,LOC107690147,LOC107733768,LOC107582531 coding downstream 88268 19283096 ~ 19286041 (-)
loxl3b loxl3b,LOC108263239,LOC108441751,LOC107690148,LOC107708481,LOC107678544 coding downstream 92480 19261810 ~ 19281829 (-)
eif2ak3 eif2ak3,LOC107683275 coding upstream 293824 19669405 ~ 19700122 (-)
rpia rpia,LOC107695020,LOC107568642,LOC107671341 coding upstream 325498 19701079 ~ 19713506 (-)
c3h20orf194 c3h20orf194 coding upstream 412163 19787744 ~ 19807623 (-)
cfd LOC100862744 coding upstream 434554 19810135 ~ 19813866 (-)
foxi2 foxi3 coding upstream 466146 19841727 ~ 19844357 (-)
G49184 NA non-coding downstream 122446 19251593 ~ 19251863 (-)
G49108 NA non-coding downstream 183694 19190327 ~ 19190615 (-)
G49053 NA non-coding downstream 321558 19052527 ~ 19052751 (-)
G48975 NA non-coding downstream 404513 18969591 ~ 18969796 (-)
G48970 NA non-coding downstream 416850 18957157 ~ 18957459 (-)
G49215 NA non-coding upstream 25083 19400664 ~ 19400863 (-)
G49232 NA non-coding upstream 52165 19427746 ~ 19428725 (-)
G49481 NA non-coding upstream 313011 19688592 ~ 19688877 (-)
G49484 NA non-coding upstream 338584 19714165 ~ 19715420 (-)
G49584 LOC108263592 non-coding upstream 520117 19895698 ~ 19970294 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other downstream 54576 19316487 ~ 19319733 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 760788 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1712890 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1799887 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1898217 17471187 ~ 17476092 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 239136 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 341019 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 806472 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 849328 20224909 ~ 20256520 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other upstream 982353 20357934 ~ 20369445 (-)

Expression


Co-expression Network