fbxo8 (fbxo8,LOC107670846,LOC107752227)


Basic Information

Item Value
gene id fbxo8
gene name fbxo8,LOC107670846,LOC107752227
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3700579 ~ 3712836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944703.2
ataattaattaataattaataagtgttgattttaaatgtttaaaagtccTTAATTTAGAAAAGAGTGATCTTAGTTAAATTTTCGTTTTGTTACGCTTTATAATAAACGTTTTTAAACCAGAAAGTGGGCGTGGTTATGGGAGGAGGGGGCGTGGCAGAGCAGCTTAAAGCTGATGTGAGTGTCAGAGTGCAGAGTGTCTCAGAGTACAGTTGAGTTTGTGGAGCTTAAACACCGGCGGTTCTGCTGGAAATGCGCTCTTCATTTGACTACAGAGTGTGAAGGACATTTTCGCTCCATAACTGATCAGACCAGCGCTGTTGTTTCGTCGCGGCGGCGGTAGAAGTAATCCATAACAACACACAGttagTGCAGGTCTGCAGATGGGTCAGGGCCTGTGGAGGGTGGCGAGGAAccagcagctgcagcaggagTACAGCGAGCAGTGTTTCCTCCAGCGCAGTGAGCGTCGGCGCAGGATGGCGCCGCTGCTGAGCGAGACGCCGTCGCAGTCGCGCCGCACGCCGCAGTGTCACGCCGACCTCGGGCACCTGCTGCGCGCACGCAAGGCCAAAGAGGAGCAGGGCTTCATCGACCTGGACATGCTGCCCCCAGAGCTCAGCATCACCATCCTCTCCTACCTGAACGCCACCGACCTGTGCCTGGCCTCCTGCGTGTGGCAGGACCTGGGCAACGACGAGTACCTGTGGCAGGGCTTGTGTAAGTCCACTTGGGGTCACTGTTCCATCTACAACAGGCTCCTCCCCCCCGGCTTCTCCTACAGAAAACTCTACATGCAGCTCGATGAAGGAAGTTTGACGTTCAACGCTAACCCTCAGGAGggCATCACTTACCTCATGTCCAAAAGCATTCTCCTGGACCATCCGAAGGAAATCGCCAAGTTCATATTCTACACCAGAATGCTGAATTGGAAGATGCTGCGTATTTATCTCGATGAACGCCGCGACGTGCTGGACGAGCTGGTCACACTACACAACTTCAGTAACCAGTTCCTTCCCAACGCGCTGAGGGATTTCTTCAGACACATTCACGCGCCCGAGGAGCGCGGCGAGTACCTGGAGACGCTCATCACCAAGTTCTCACACCGTTTCTGTGCCTGTAACCCCACGCTGGTGAGGGACGTCGGCCTCACGCCTGACGCCGTGTACGTGCTGTGCTACTCGCTCATCCTGCTCTCCATCGACCTGAGCAGCCCACACGTGAAGAACAAGATGTCCAAGCGCGAGTTCATCCGCAACACGCGCCGCGCCGCACAGAACATCAGCGAGGACTTTGTGGGTCACCTGTATGACAACATCTATCTGATCGGCCATGTGGCTGCCTAGCAGATTATATgcgtacatacacacacacacacacacacatgggcacTGGCCAATAAAACACTCAGCTATGGCACTGATGCGCTTTCTGCTAATCCGAAGGGGTCTTAGGATGGAGAGAATAACACACTGATCCTAACCCTGAGGTATAGAGATGTTCATTAGGATAGTGTAGGGTATGCTAGACagcagcccacacacacacacacacacacacacacaaaaacgtGGGTTGCCTTAAGCAGCCCGAGGCAGAAAAGGGTAGCGACACACTCACAGCTTAAAACTGCAGAGCCATGTAGCCACACGAAGCTAAATGCAGCCGTGTCATTATAAGTCAATGAACGTCCATTTTAATCTCCGAACTTTAAATCTGGCCCGAGTCTGCTCGCTCACGATTATTACATTTTGACTGTTTATGAAGCCACCGTCTGCGAGCGAGATTATTTTTCCACTTGATGACTGTCTGCTCTCTGCATctatttcctcttttctttataGCCGTCGATTCCAAAGcagccacaaaaaaaatctggtttgaTCCAGATGAAACCGAAGGGCCTTcgatctctttttttttgatgatgatgatgatgatgatgatgatgatgaagatacaCCAACAATAatcattgtgtattttttttttttaattaaacagctTGATGTTGTTGCACTTAATCCACTGACAAACTCTCTCAGCTTGAATAACCGCAGCGTGAAGTGATTATTACGGAGATGTTTCGAGATTCCGAATGTAAAGCGGACATGGATATGAAGATTCATGATCACTTAAACCGTGACATGGTGCTGTTAGAGGGTAACGTTGCTGCCTCACGGCTCAAGCGTCcccaggttcgatcctgagctcgggtctGTGTTACTCCTCcagattctctggtttcctcccaacttCCGAAACAGTGTACTGGCTACGTTAAACTGTGCCTaggttgtgaatgtgtgtgtgctggcgtCTCATCCAGGCTCACACCCAgcattcccgggatagactcccaGGATCCACCGCGACCCTGCCCAGGAtgaagcacttactgaagatccCTTTATCCTAAATATAGTTGGAAGTCTGACTCTTTTTGTCTGATGTGGACTTCCGTTCATTTTTAAGCTCATAGCTCATATAAATCTGATGGACTGAGTTCCAGTTCCTGTAATTGCTCAGTCGGTTTTAGCTGTCTAACACCAGCGTGTGTATGCGTAGCTTCCTAATGAGGTGTGGATGCGACGGGAACGCCTCGCCCCCGCTGCCTGTGTAATCTCTCGCTGCTTCCGCTGTGTAACACGAGCGAATCTCTTACACTGCTACTGTTAGGTTGATCAAGAGCACTTTAACCCAAggagatatttttatttgtagtaatgttattctataatattatatccctcctttttttttttttttttttttcttttctaatttggGTTGTATGCACATCTGAAGGAGCTCCACAGTAGTGCCAATAGCAATGCTGAAGTGTGTACACTGACGTAACATCATTCGCATTATATAGTATAAACAGATGAATAATACGACTTGTTTTATTTGCACATCATGTACATATTTAAGTATAGAggtttatatagaaatataattttatttttaaatattttagctaATTTTTCTGATGGTTTTTCTTTCCCTTATTTGATAGGGCGACTTCTCTTTTTGCACTTAAGAAATTTTTGCcacgtctttctctctctctcactcacacacacacacacacacacaaaccactcGCATCATTGATGTCGTCCATCATGCAAATGAATACTAATGATGCAAACAAAAGTCCGGTATATCTGttttattgtgactttttttttccatttacttcCCTGCAATCATTCCACTGTTGTTCTGAGAAAATCTCTGACTATTCAGGAAACAATTCTTCAACATTATCTAATGATTTGgcctaataattattattattattattattattattattatgtgtttaGTAGGCATGTGCCTGTAATCACCTACACTATATTTTTAGACTATTTTAGAACCTGGATGATCTTGGTATCATGGAAATGAGTGCTTTGAATTGTCGTTTGAAATGATCATCACTACTGCTGCGTTTGATTTCTCCAAGCTGAACGTACTGGAGTCCTGAGAGTAAATAACTGTCACATGCACTAGACGTGAAGATGTAATGGCCTTAGTAAGGTCCCAGAGTTcagtcacactttttttttttttttccttcaaatatcatgataatgtaatataataaaattaaaggtAAGCTTATGTTCAtgatcatttgtttttgtttttgtttttttttttttttaaatgtaatactgGCACATGCctattatttctaaaaaaatatatatatattagcttTCCAAGAGGCCTTACAGGacagaataataaaagaatgtgataaataaagttgaatttTCTCCTGACAGCAGAGCTATATTGCAGAATTAAATCCATAACAATGAAACTCTCTTATGTTTgatcagatttatttaatattaagaaaTTAGCAGATAATTGTTTTGAGAAAGGTTTCTGAATGACAACACTGGACTAAAATACTTCTagattgtataaaaaaaataaaatgttgagAAGCA

Function

symbol description
fbxo8 Predicted to act upstream of or within regulation of ARF protein signal transduction. Is expressed in female organism. Orthologous to human FBXO8 (F-box protein 8).

NR:

description
PREDICTED: F-box only protein 8

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K10294 FBXO8; F-box protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944703.2 True 3963 mRNA 0.43 6 3700579 3712836

Neighbor

gene id symbol gene type direction distance location
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding upstream 32087 3644478 ~ 3668492 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding upstream 58831 3572427 ~ 3641748 (+)
gpm6ab gpm6a,gpm6ab,LOC107670876,LOC107737106,LOC107752222,LOC107676686 coding upstream 197459 3434345 ~ 3503120 (+)
LOC113541773 NA coding upstream 324463 3373213 ~ 3376116 (+)
LOC117596854 NA coding upstream 341604 3356422 ~ 3358975 (+)
hand2 hand2 coding downstream 89728 3802564 ~ 3805829 (+)
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding downstream 125890 3838726 ~ 3840862 (+)
scpp1 LOC108262830 coding downstream 770712 4483548 ~ 4487275 (+)
tnip2 tnip2 coding downstream 782796 4495632 ~ 4500384 (+)
prmt9 prmt9 coding downstream 1170160 4882996 ~ 4892379 (+)
G40287 NA non-coding upstream 15374 3683343 ~ 3685205 (+)
LOC117596918 NA non-coding upstream 175458 3515101 ~ 3525121 (+)
LOC117596855 NA non-coding upstream 297473 3400795 ~ 3403106 (+)
G38962 NA non-coding upstream 1269492 2427812 ~ 2431087 (+)
G38948 NA non-coding upstream 1273979 2411201 ~ 2426600 (+)
G40374 NA non-coding downstream 151860 3864696 ~ 3865000 (+)
G40586 NA non-coding downstream 417279 4130115 ~ 4130322 (+)
G40590 NA non-coding downstream 514357 4227193 ~ 4227431 (+)
G40591 NA non-coding downstream 515346 4228182 ~ 4228548 (+)
G40592 NA non-coding downstream 516556 4229392 ~ 4229622 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 1609236 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 1703314 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 2475978 1194219 ~ 1224601 (+)
trmo trmo other upstream 2511985 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 2558645 1102778 ~ 1141934 (+)
LOC113545357 NA other downstream 119031 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 951480 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1550746 5263582 ~ 5357860 (+)
G41047 NA other downstream 1605698 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 2182595 5895431 ~ 6228685 (+)

Expression


Co-expression Network