ap3m1 (LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495)


Basic Information

Item Value
gene id ap3m1
gene name LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13229662 ~ 13236979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944816.2
ataatattgCTGAAACTAGACAGAATtggtaaatactgtatgtttaagtTTGAATATGGACTATCGTGTGTGTTTGATAGAAGTGTTTATGTAAGCTTTTTATTAGCTCTGTGTCTTACAATCATTTGGGAACAGCACTTTTCTAGGCACCTCGCTAAACAAGCCTCGGAAGGCTGTAACTACTGCCATATTGCCACCGAAGACTTTTCCTCTTACTTTACTCTCTCCGAGGCGTTTCGGGAAAagAGCACAACATGATTCACAGCTTGTTCCTGATTAACAGCACTGGCGACATATTCCTGGAAAAACACTGGAAGAGTGTGATAAGCCGCTCTGTCTGCGATTACTTTTTTGAAGCTCGAGAGAAGGCAGGGGAACCGGATAACGTGCCTCCTGTGCTCTGCACGCCTCATCACTACCTCATTAATATCTACCGTGAGAAAATCTTTTTCGTTTCCGTCATCCAGGCAGAAGTACCCCCCCTCTTTGTTATTGAATTTCTTCATCGTGTTGCTGAGACGTTTCAGGATTATTTCGGTGAATGCTCGGAAGTTACTATTAAGGACAATGTTGTAATTGTGTATGAGCTCCTTGAAGAAATGCTGGATAATGGCTTCCCTCTGGCAACGGAGTCCAACATCCTGAAAGAACTTATTAAACCTCCCACCATTTTGCGCTCTATGGTCAACAGCATCACAGGCAGTAGTAATGTTGGTGACACTCTCCCTACTGGACAACTGTCCACTATCCCCTGGAGGAGGGCTGCTGTAAAATACACTAACAACGAAGCCTATTTTGATGTGGTGGAAGAAGTTGATGCCATCCTGGATAAATCCGGCACAACAGTGTTTGCGGAAATCCAGGGAGTGATTGATGCTTGTGTGAAACTCTCAGGAATGCCCGATCTTACACTTTCATTTATGAACCCCAGACTCCTGGACGATGTGAGCTTCCATCCATGTGTCCGCTTCAAGAGATGGGAGTCTGAGAAAGTTCTCTCCTTCATCCCCCCCGACGGAAACTTCCGACTCATGTCTTATCATGTGACTGCACAAAATTTGGTAGCAATCCCGGTATACGTGAGGCAGAATATCAGTTTCTTTGAGACTGGATCCTCCGGGAGGCTGGACATCACAGTGGGTCCTAAGCAGACCATGGGGAAGACTGTTGAGTGTGTGGGAGTCACAATACACATGCCGAAAGTTGTCCTCAGTGCCAATCTCACAGCAACTCAGGGCACGTACACCTACGACCCAGTCACCAAGATTTTGGCGTGGGACATCGGCAAACTGAACCAACAAAAACTGCCAAATTTAAAAGGAAGTCTGAGCTTGCAGTTAGGAGCTCCGAAACCAGAGGAAAATCCCAGCCTGAACATTCAGTTCAAGATTCAGCAGTTAGCTATCTCAGGACTGAAAGTCAATCGACTGGACATGTATGGAGAGAAATACAAACCATTTAAAGGTGTTAAATATATAACCAAAGCTGGAAAGTTCCAGGTCAGAACTTGAAGCTGTCTGTAAACTGTCacaaaacatcataaacatgacagcaaTGTGTTCTTATATGTGACAAATCAAATTTTACAATCACTTCAGAATTACTCTGTATTGCCAATGTGTTACGCTTCGGTGGTGGTTGGGGGGAGAGGGGTTTAAGATTGGGTGGGAATTTGCTTTTGCAAAAGCCTTACATGGATTTCTTTACTTTGAAGAAGAACATTCCTTTTTCATTGTTGTGCTTAATAATAAGAGATTTACAGAGTGGAATAGTTCACATATTCATACCAGAATGAGTTCTTTTACTCTGTCCTGTTTTAACCAGAGAGAAGCTTCCCAAAGTTTCAGTCTGTTGTCAGTGTTTTCACTTTTCTGTCTGAGCGAGCCAATGAAGGAGGATATTTCACTTGATCATACCTGCTTTAGTAATGGTGgatatattttccattttttatctGTGTACATTTCAAGCCAAGCCTTTGCCAAGCAGATAAGAAATATTTAGGTACCCTACCTTTAGCACAATGCACAAATCTTAAGTGgccttttaaaaagaaaaaaaaaaaacctgaggcCTTTCTTAAAATCAGAGCTATGTCTTAAATAGCTGTGCTGTTACTCAAAAACACTACACCCATCACACATCCTGAGTTTTCACTCAGGAGGGAAAGAAGAGCGGGTGAGGTGTATTCATTTAGAACTGTGTTCTTGGTTTATGtgcaaaatatttgtataaattgCTAAGGAACTAGTATTGATAGTTTGCTGCAAATACTAATTgataaaggaacactttgaggTGCTACGTTAGAAGTTACCCGGCTTGCGAACGTGGCAGGTATGTGAGTCACTCAGAGTTTTGCACATTCTGAAGGGACACATCTTttgtaatgtttagaaataaCTAAGTTAATTGATttgaaaatatgtatataaacctAATGCcttgacatttataaacattttgggaaatta

Function

NR:

description
PREDICTED: AP-3 complex subunit mu-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12398 AP3M; AP-3 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944816.2 True 2474 mRNA 0.41 9 13229662 13236979

Neighbor

gene id symbol gene type direction distance location
dusp13a dusp13a,LOC108263393,LOC107666542,LOC107743611,LOC107601810,LOC107552920,LOC107671562 coding upstream 174287 13040207 ~ 13055375 (+)
zgc:153981 LOC108262675,LOC108426808,LOC103035759 coding upstream 190325 13034660 ~ 13039337 (+)
cfap43 cfap43 coding upstream 248284 12957156 ~ 12981378 (+)
adam8a adam8 coding upstream 300608 12920496 ~ 12929054 (+)
msx3 msx3,LOC108263347 coding upstream 318048 12909723 ~ 12911614 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325 coding downstream 58253 13295232 ~ 13310269 (+)
LOC113543512 gsto1,LOC100304822 coding downstream 77616 13314595 ~ 13317625 (+)
calhm3 calhm3,LOC108263123,LOC107578949,LOC102205420,LOC102305682 coding downstream 88914 13325893 ~ 13329493 (+)
calhm1 LOC108263121,LOC108263394 coding downstream 92935 13329914 ~ 13333161 (+)
LOC113543782 LOC108263125 coding downstream 96362 13333341 ~ 13338334 (+)
G45508 NA non-coding upstream 133781 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 177133 13052240 ~ 13052529 (+)
G45453 NA non-coding upstream 198526 12960090 ~ 13031136 (+)
G45459 NA non-coding upstream 212062 13011946 ~ 13017600 (+)
G45376 NA non-coding upstream 359439 12870003 ~ 12870223 (+)
G45592 NA non-coding downstream 74698 13311677 ~ 13312080 (+)
G45594 NA non-coding downstream 76015 13312994 ~ 13313221 (+)
G45640 NA non-coding downstream 138820 13375799 ~ 13375999 (+)
G45712 NA non-coding downstream 284860 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 285927 13522906 ~ 13594825 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 195312 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 224339 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 292360 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 586358 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 593256 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 261069 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 976390 14213369 ~ 14286542 (+)
cgas NA other downstream 1124388 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1735589 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2556427 15793406 ~ 15797204 (+)

Expression


Co-expression Network