pdlim1 (pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525)


Basic Information

Item Value
gene id pdlim1
gene name pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13531660 ~ 13536867 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944855.2
CTTTTACAAAGTTACCGCCCTGAGAGACTGAAGTTAGACCGAAAGTTACACGTTTTGTTTCGCTAAGCTGTAGCTTAGATCTGTCTAAtttgttattaaacatttttaattaagaatGCCAATGCAGATTGTCATGCAGGGTCCAGGACCTTGGGGGTTTAGACTGGTCGGTGGTAAAGATTTTGAACAGCCCCTGACTATTTCACGGGTAACCCCAGGAAGTAAAGCAGCCCAGGCCAACCTCTGTATTGGTGACACGATTGTTGCCATTGATGGGGAGCCAACAGAGGGAATGACTCACTTGGAAGCCCAGAATAAGATCAAGAGTTGTGTCGAAGAAATGGTCCTCTCTATAGACAGATCAGAATCAAAAATGTGGTCTCCCCTTGTCTCTGAAGATGGGAAGACGCATCCATACAAGATGAATCTGGCATCAGAATCGCAGGAGGTGAAACACATAGGTTCTGCTCACAACAGGAGTGCCCTCCCATTCAATTCGCCAGGTTCCAAGGTGGTTACAAGCCACTATAATAATCCAGCAGGCTTGTACTCTTCTGATAACATCAAGGACTTTAACAGCGCTGTTGGTGGTGCCAAGACCACTGTGACATCCAGCGAACCAAGTAATAATCCAGATCTCTCTAAACCTGTCCAGCCAAAACCATCAATTGCTGTTGACTCAGAGGTCTATAAAATGCTGAATGAGAACCAAGAGTCGTGTGAGCCTCCACGCCAGTCTGCATCATTCAAAGTCCTGCAGGAGATCCTTGAGACTGGTGATTCTGACAAACCCTCTGGGTTTAGAAGTGTGAAAGCACCCACTACAAAAATTGCTTCTTCTGTGGGCAGTACTGAGAAACTCTCCATCTGTGACAAATGTGGCTCAGGGATTGTGGGCATGTTTGTCAAACTGCGAGATAAGTTCCGCCACCCTGAGTGCTACGTCTGCACTGACTGCGGCACAAATCTGAAACAGAAAGGACACTTTTTCGTCGATGAAAAGATTTACTGTGAGAAGCATGCACGTGAACGAGTGACGCCTCCTGAGGGTTATGATGTCGTCACTGTCTTCCCAAAATAGATGCTTCTCCAGTGATGCTTCAAAACTGCACATTTCCCTGTTGTGAGGAATTctatacacattataaacaCTTCATGTGGATAGTTTTTCATTGTGTTCTGGCAGAGTTAGCACCAAACAGTTACATCTTTCCAGTTAATACACTAGATTTGTCCATTCGAATATTTGCTTACTCATCGTATCAAGTAGACTATCCTCATGAAGTGCTTCTAATATAAGACATTCCAGTTTCATAGACATCCCATATGCGAGACGGTGAAACATAATTGCATTGGTGCTAGAATTCTGTCCAAGGCCTCGTGAAAATACTATTAAAAAGGACAAGGTGCCACATTGCCTAAATTTTGCACTTAGATATAAAGGAAAGTGTGAGTATGTTTCAGTGGTAAGCTCAGACATTTCTGGCACATttactgtaactataaaggTTTTGACTTTTGGAACTGTCAAAGATTTAGGGACCAATGATTTCATCTCTCTGGAAAAGTGAAAAATCTCAGTTCTTCAGCTTTCTCTGGAAGCTCCATATATGAGCAATAATACCTGAACATTTCATAATCTCTAGTTTGGTTTCTTAAGGACTGTTTATTTCAAGTATTATGTCCTTGCTTCCAATAGCTTTTCTGTATCGGTGTAATAAATATGACTgtatcaaatacattttttttaacgcCAACCTGTTTACCTTCTGCATAACTTGTTTAAACtcacagcacaatgcataaaataaaataatccatggacccaa

Function

symbol description
pdlim1 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be located in cytoskeleton. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including anterior axial hypoblast; digestive system; epidermis; nervous system; and yolk syncytial layer. Orthologous to human PDLIM1 (PDZ and LIM domain 1).

NR:

description
PDZ and LIM domain protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944855.2 True 1829 mRNA 0.42 7 13531660 13536867

Neighbor

gene id symbol gene type direction distance location
sgpl1 sgpl1,LOC107726953,LOC107655444,LOC107601887,LOC107559334 coding downstream 14563 13502714 ~ 13517097 (-)
si:dkey-192p21.6 LOC108263840,LOC108426754,LOC106576822 coding downstream 33699 13465041 ~ 13497961 (-)
ret ret coding downstream 72083 13437136 ~ 13459577 (-)
mcmbp mcmbp,LOC107655439,LOC107743503,LOC107559330 coding downstream 113989 13405268 ~ 13417671 (-)
tial1 tial1 coding downstream 156802 13366125 ~ 13374858 (-)
rel rel coding upstream 8659 13545526 ~ 13554549 (-)
papolg papolg coding upstream 20006 13556873 ~ 13571810 (-)
LOC117596880 NA coding upstream 315626 13852493 ~ 14033717 (-)
vrk2 vrk2 coding upstream 519275 14056142 ~ 14068978 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding upstream 831320 14368187 ~ 14387373 (-)
G45755 NA non-coding downstream 66921 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 218504 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 221420 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 281283 13248942 ~ 13250377 (-)
G45422 NA non-coding downstream 625185 12906274 ~ 12906475 (-)
LOC113543535 NA non-coding upstream 95888 13632755 ~ 13641524 (-)
G46183 NA non-coding upstream 646901 14183768 ~ 14184086 (-)
G46304 LOC108263835 non-coding upstream 752689 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 1076674 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 1077649 14614516 ~ 14614764 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 96174 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 500464 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 892058 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 892337 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 898242 12631213 ~ 12633418 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other upstream 645024 14181891 ~ 14192243 (-)
sdhaf4 sdhaf4 other upstream 1242989 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1876046 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2907829 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 3442264 16979131 ~ 16982729 (-)

Expression


Co-expression Network