smarca5 (smarca5,LOC107703846,LOC107594298,LOC107757072)


Basic Information

Item Value
gene id smarca5
gene name smarca5,LOC107703846,LOC107594298,LOC107757072
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5843566 ~ 5857230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944869.2
caaaaaaaaaaaaagccggtGGGAAGTGACTGACGAAGCGCGTGGCTTTGTTGTTCTCAGCGGtgtatattgtaataaattCGGGTTGAGTGGAAGAGCTGAGTCGGCTATAGGATATAAAGTCGTGTTTGAATCTGTTTTGTACTGAAAGAAGGGAAGATAAAGTGCAGGATGTCTGAGACGGAGGGAAGCGCGGACAGACAGCGGGAAGAAGAGGCTGAAGTTGAGCAGCCCGGGACAACACAGagGCTCTTATTTCTTCAGGACACTTGGAATAACCCCTCCATATCTGTCTCTAAGGATGGTGCTTCAGGTGCTGAAGAAGCAGCGCAGGATGGAGGTGAGCAGTCGTCCTCTCCTCCGGCTGAAAAGGCGAAGGCGGAGCAGTCAGCGGGTTATGAAGAGAAAGTGAAAACAGACCGGACCAACAGATTCGAGTACCTTCTGAAGCAGACAGAGGTGTTCGCTCACTTTATTCAACCTGCTGCCCAGAAGACCCCTACCTCTCCACTGAAGATGAAACCCGGCCGCCCTCGCATTAAAAAGGACGAGAAACAGAACCTGCTATCTGCTGGCGATAACCGTCACCGTCGTACTGAgcaggaggaggatgaggagctGCTCAGTGAGAGCAGTAAAGCTGCCAACGTGTGCACACGCTTTGACGAGTCTCCGTCCTATGTGAAAACGGGCAAACTCCGAGATTATCAGATCCGTGGACTGAACTGGCTGATTTCACTGTATGAGAACGGAATCAACGGGATCCTGGCCGATGAAATGGGTCTCGGAAAGACCCTACAGACCATTTCTCTCCTGGGCTACATGAAACACTACAGGAACATCCCCGGGCCTCACATGGTCCTGGTTCCCAAGTCCACGCTGTATAACTGGATGAACGAGTTTAAGCGCTGGGTTCCCTCGCTTCGAGCTGTCTGCCTCATAGGAGACAGGGACGAGAGGACGGCTTTCATCCGTGATACTCTGTTGCCGGGAGAGTGGGATGTCTGCGTCACTTCCTATGAAATGCTCATCATTGAGAGGGCCGTCTTTAAGAAGTTTAACTGGAGGTATCTGGTTATCGACGAGGCCCATCGTATCAAGAACGAAAAATCAAAGttgTCAGAAATTGTGCGAGAGTTCAAGACCACCAACCGGTTGCTGCTCACAGGAACCCCGCTTCAGAACAACCTGCACGAGCTGTGGGCTTTGCTCAACTTCCTCCTTCCTGACGTCTTCAACTCCTCCGAGGACTTTGATTCCTGGTTTGACACAAATAACTGTCTTGGAGACCAGAAACTGGTTGAGCGTTTACACActGTATTACGTCCTTTTCTGCTGAGGCGTATCAAAGCCGATGTGGAGAAATCTCTGCTTCCTAAAAAAGAAGTCAAGATGTATGTTGGGCTCAGCAAGATGCAGAGAGAATGGTATACTAAAATCCTGATGAAGGACATTGACATCCTGAACTCGGCAGGGAAGATGGATAAGATGCGTCTGCTGAACGTGCTGATGCAGCTCAGGAAGTGTTGTAATCACCCGTATCTGTTTGATGGCGCAGAGCCCGGCCCACCTTACACCACTGACCTCCATCTTGTCGTCAACAGCGGCAAGATGGCCGTCCTTGATAAACTGCTGCCCAAGCTGAAGGAGCAAGGTTCTCGTGTGCTGATCTTTAGCCAGATGACCAGGATGCTGGACATTCTGGAAGACTACTGTATGTGGCGTAACTATGGCTACTGCCGCCTGGATGGACAAACGCCTCACGAGGAGAGACAGGTCTCCATCAATGTCTTTAATGAGCCCAACAGCTCCAAGTTTCTGTTTATGCTGAGCACTAGGGCTGGTGGGTTGGGGATTAACCTGGCTACAGCTGATGTGGTCATTATTTATGACTCTGACTGGAATCCTCAAGTGGACCTGCAGGCCATGGACCGCGCTCACAGAATCGGTCAGAAGAAACAAGTACGCGTGTTCCGTTTCATTACAGATAACACTGTAGAGGAGAGGATTGTGGAACGTGCCGAAATGAAACTACGTCTAGACTCCATCGTCATCCAGCAAGGTAGATTGGTTGATCCTAACATGAACAAGCTGGGCAAAGACGAGATGTTGTCCATCATTCGGCACGGCGCCACTCACGTCTTTGCTTCTAAGGAGAGTGAAATCACTGATGAAGACATTGATGTCATCCTGGAGAGAGGCGAAAAGAAGACCTtggagatgaaggagaagatgtCGAAACTTGGTGAAGGCTCTCTGAGGAATTTCACCATGGACACAGAAAACAGCGTGTACAACTTTGAAGGCGAAGATTACCGAGAGAAGAAAAAGGTCATCACAAACTGGATTGAGCCACCAAAAAGAGAGCGTAAAGCGAACTATGCTGTTGATGCCTACTTCAGGGAGGCCCTGCGTGTTAGTGAGCCTAAAGCACCAAAGGCTCCTCGGCCTCCCAAACAGCCCAACGTTCAAGACTTCCAGTTCTTCCCACCTCGGCTTTTTGAGCTGCTCGAGAAGGAGATCTTGTACTACAGGAAAACTATTGGTTACAAGGTGCCGAGGAATCCTGACCTGCCCAATGCTGCTCAGGTGCAGAAGGAGGAGCAGGCTAAGATTGATGAAGCAGAACCTCTAAATGAAGAAGAgctggaggagaaggagaaccTCCTGTCGCAGGGCTTCACCATTTGGAACAAGCGAGATTTCAACCAGTTCATTAAGGCTAATGAGAAATGGGGAAGAGACGATATTGAGAACATCGCCCGTGAAGTGGAAGGCAAAACACCTGAAGAAGTCATGGAGTATTCCGctgtgttcTGGGAGCGCTGCAATGAGCTGCAGGATATTGAGAAGATCATGGCTCAGATTGAGCGAGGTGAAGCCAGGATTCAGAGGAGGATCAGCATCAAGAAAGCACTGGACTCAAAGattGGCCGTTACAAGGCACCATTCCATCAGCTAAGGATTTCTTACGGGACCAACAAAGGGAAGAACTACACTGAAGAGGAGGATCGTTTCCTCATCTGTATGCTGCACAAGCTGGGCTTCGACAAGGAGAGCGTTTACGACGAGCTGCGCCAGTGTATTCGCAACTCGCCACAGTTCCGCTTCGACTGGTTCCTGAAGTCTCGCACAGCCATGGAGTTACAGAGGAGATGTAACACACTGATTACTCTAATCGAGCGTGAGAACATGGAGCTGGAAGAACGGGAGAAGGCGGAGAAGAAGAAACGGGGACCTCGCAATTCTTCAGCACAGAAACGTAAGCAGGATGGGACCCCAGACGGCCGCGGCCGTAAGAAGAAGCTGAAGTTATAAATCACACTTGAACCCCCACTGACGGATGAGGCGCTTTAGTAGAGCATTTGTGTTACGGGTCCCACTTACGTACTGTATCAGCTTGCGTCACAGTAGCTCGTCCTTTTATAAAAAGGCGTAGTATTGTAAAATAGATCAATCTTTTAGTTATATAATAAACTACGGCTgtgctgttctttctttcttctttctgtttttttttttaaacacttttgtatttgtaatttgtgagctattgaaataaatgtatttatgccTGTTGGTTATGTACTACATTCCACTTGCTTATCAGAATAAATTGtttttct
>XM_026944878.2
caaaaaaaaaaaaagccggtGGGAAGTGACTGACGAAGCGCGTGGCTTTGTTGTTCTCAGCGGtgtatattgtaataaattCGGGTTGAGTGGAAGAGCTGAGTCGGCTATAGGATATAAAGTCGTGTTTGAATCTGTTTTGTACTGAAAGAAGGGAAGATAAAGTGCAGGATGTCTGAGACGGAGGGAAGCGCGGACAGACAGCGGGAAGAAGAGGCTGAAGTTGAGCAGCCCGGGACAACACAGGATGGTGCTTCAGGTGCTGAAGAAGCAGCGCAGGATGGAGGTGAGCAGTCGTCCTCTCCTCCGGCTGAAAAGGCGAAGGCGGAGCAGTCAGCGGGTTATGAAGAGAAAGTGAAAACAGACCGGACCAACAGATTCGAGTACCTTCTGAAGCAGACAGAGGTGTTCGCTCACTTTATTCAACCTGCTGCCCAGAAGACCCCTACCTCTCCACTGAAGATGAAACCCGGCCGCCCTCGCATTAAAAAGGACGAGAAACAGAACCTGCTATCTGCTGGCGATAACCGTCACCGTCGTACTGAgcaggaggaggatgaggagctGCTCAGTGAGAGCAGTAAAGCTGCCAACGTGTGCACACGCTTTGACGAGTCTCCGTCCTATGTGAAAACGGGCAAACTCCGAGATTATCAGATCCGTGGACTGAACTGGCTGATTTCACTGTATGAGAACGGAATCAACGGGATCCTGGCCGATGAAATGGGTCTCGGAAAGACCCTACAGACCATTTCTCTCCTGGGCTACATGAAACACTACAGGAACATCCCCGGGCCTCACATGGTCCTGGTTCCCAAGTCCACGCTGTATAACTGGATGAACGAGTTTAAGCGCTGGGTTCCCTCGCTTCGAGCTGTCTGCCTCATAGGAGACAGGGACGAGAGGACGGCTTTCATCCGTGATACTCTGTTGCCGGGAGAGTGGGATGTCTGCGTCACTTCCTATGAAATGCTCATCATTGAGAGGGCCGTCTTTAAGAAGTTTAACTGGAGGTATCTGGTTATCGACGAGGCCCATCGTATCAAGAACGAAAAATCAAAGttgTCAGAAATTGTGCGAGAGTTCAAGACCACCAACCGGTTGCTGCTCACAGGAACCCCGCTTCAGAACAACCTGCACGAGCTGTGGGCTTTGCTCAACTTCCTCCTTCCTGACGTCTTCAACTCCTCCGAGGACTTTGATTCCTGGTTTGACACAAATAACTGTCTTGGAGACCAGAAACTGGTTGAGCGTTTACACActGTATTACGTCCTTTTCTGCTGAGGCGTATCAAAGCCGATGTGGAGAAATCTCTGCTTCCTAAAAAAGAAGTCAAGATGTATGTTGGGCTCAGCAAGATGCAGAGAGAATGGTATACTAAAATCCTGATGAAGGACATTGACATCCTGAACTCGGCAGGGAAGATGGATAAGATGCGTCTGCTGAACGTGCTGATGCAGCTCAGGAAGTGTTGTAATCACCCGTATCTGTTTGATGGCGCAGAGCCCGGCCCACCTTACACCACTGACCTCCATCTTGTCGTCAACAGCGGCAAGATGGCCGTCCTTGATAAACTGCTGCCCAAGCTGAAGGAGCAAGGTTCTCGTGTGCTGATCTTTAGCCAGATGACCAGGATGCTGGACATTCTGGAAGACTACTGTATGTGGCGTAACTATGGCTACTGCCGCCTGGATGGACAAACGCCTCACGAGGAGAGACAGGTCTCCATCAATGTCTTTAATGAGCCCAACAGCTCCAAGTTTCTGTTTATGCTGAGCACTAGGGCTGGTGGGTTGGGGATTAACCTGGCTACAGCTGATGTGGTCATTATTTATGACTCTGACTGGAATCCTCAAGTGGACCTGCAGGCCATGGACCGCGCTCACAGAATCGGTCAGAAGAAACAAGTACGCGTGTTCCGTTTCATTACAGATAACACTGTAGAGGAGAGGATTGTGGAACGTGCCGAAATGAAACTACGTCTAGACTCCATCGTCATCCAGCAAGGTAGATTGGTTGATCCTAACATGAACAAGCTGGGCAAAGACGAGATGTTGTCCATCATTCGGCACGGCGCCACTCACGTCTTTGCTTCTAAGGAGAGTGAAATCACTGATGAAGACATTGATGTCATCCTGGAGAGAGGCGAAAAGAAGACCTtggagatgaaggagaagatgtCGAAACTTGGTGAAGGCTCTCTGAGGAATTTCACCATGGACACAGAAAACAGCGTGTACAACTTTGAAGGCGAAGATTACCGAGAGAAGAAAAAGGTCATCACAAACTGGATTGAGCCACCAAAAAGAGAGCGTAAAGCGAACTATGCTGTTGATGCCTACTTCAGGGAGGCCCTGCGTGTTAGTGAGCCTAAAGCACCAAAGGCTCCTCGGCCTCCCAAACAGCCCAACGTTCAAGACTTCCAGTTCTTCCCACCTCGGCTTTTTGAGCTGCTCGAGAAGGAGATCTTGTACTACAGGAAAACTATTGGTTACAAGGTGCCGAGGAATCCTGACCTGCCCAATGCTGCTCAGGTGCAGAAGGAGGAGCAGGCTAAGATTGATGAAGCAGAACCTCTAAATGAAGAAGAgctggaggagaaggagaaccTCCTGTCGCAGGGCTTCACCATTTGGAACAAGCGAGATTTCAACCAGTTCATTAAGGCTAATGAGAAATGGGGAAGAGACGATATTGAGAACATCGCCCGTGAAGTGGAAGGCAAAACACCTGAAGAAGTCATGGAGTATTCCGctgtgttcTGGGAGCGCTGCAATGAGCTGCAGGATATTGAGAAGATCATGGCTCAGATTGAGCGAGGTGAAGCCAGGATTCAGAGGAGGATCAGCATCAAGAAAGCACTGGACTCAAAGattGGCCGTTACAAGGCACCATTCCATCAGCTAAGGATTTCTTACGGGACCAACAAAGGGAAGAACTACACTGAAGAGGAGGATCGTTTCCTCATCTGTATGCTGCACAAGCTGGGCTTCGACAAGGAGAGCGTTTACGACGAGCTGCGCCAGTGTATTCGCAACTCGCCACAGTTCCGCTTCGACTGGTTCCTGAAGTCTCGCACAGCCATGGAGTTACAGAGGAGATGTAACACACTGATTACTCTAATCGAGCGTGAGAACATGGAGCTGGAAGAACGGGAGAAGGCGGAGAAGAAGAAACGGGGACCTCGCAATTCTTCAGCACAGAAACGTAAGCAGGATGGGACCCCAGACGGCCGCGGCCGTAAGAAGAAGCTGAAGTTATAAATCACACTTGAACCCCCACTGACGGATGAGGCGCTTTAGTAGAGCATTTGTGTTACGGGTCCCACTTACGTACTGTATCAGCTTGCGTCACAGTAGCTCGTCCTTTTATAAAAAGGCGTAGTATTGTAAAATAGATCAATCTTTTAGTTATATAATAAACTACGGCTgtgctgttctttctttcttctttctgtttttttttttaaacacttttgtatttgtaatttgtgagctattgaaataaatgtatttatgccTGTTGGTTATGTACTACATTCCACTTGCTTATCAGAATAAATTGtttttc

Function

symbol description
smarca5 Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within cardiac ventricle development and retina development in camera-type eye. Predicted to be active in nucleus. Orthologous to human SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5).

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944869.2 True 3626 mRNA 0.49 24 5843566 5857230
XM_026944878.2 False 3571 mRNA 0.49 24 5843566 5857229

Neighbor

gene id symbol gene type direction distance location
LOC113542482 NA coding upstream 92534 5733447 ~ 5751032 (+)
LOC113542496 LOC108263485 coding upstream 113904 5718697 ~ 5729662 (+)
LOC113542501 LOC108263484 coding upstream 127528 5697206 ~ 5716038 (+)
LOC113544150 NA coding upstream 153604 5677180 ~ 5689962 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding upstream 169438 5636867 ~ 5674128 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding downstream 408700 6265930 ~ 6295477 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding downstream 469630 6326860 ~ 6371028 (+)
ucp1 ucp1,LOC107703842 coding downstream 518339 6375569 ~ 6383460 (+)
gprin3 LOC108262861 coding downstream 541664 6398894 ~ 6405603 (+)
zgc:154142 LOC108262754 coding downstream 561032 6418262 ~ 6463985 (+)
G41232 NA non-coding upstream 24119 5818548 ~ 5819447 (+)
G41049 NA non-coding upstream 508001 5333384 ~ 5335565 (+)
G41032 NA non-coding upstream 521175 5270315 ~ 5322391 (+)
G41026 NA non-coding upstream 535448 5258551 ~ 5308118 (+)
G41031 NA non-coding upstream 573371 5264901 ~ 5270195 (+)
G41299 NA non-coding downstream 18918 5876148 ~ 5876422 (+)
LOC117596795 NA non-coding downstream 382137 6239367 ~ 6262431 (+)
G41331 NA non-coding downstream 403375 6260605 ~ 6263303 (+)
G41345 NA non-coding downstream 446667 6303897 ~ 6304105 (+)
G41600 NA non-coding downstream 661829 6519059 ~ 6552115 (+)
znf827 znf827 other upstream 485706 5263582 ~ 5357860 (+)
G41047 NA other upstream 501816 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 1071962 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 2008940 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 3752223 2025488 ~ 2091343 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 38201 5895431 ~ 6228685 (+)
G42075 NA other downstream 1346720 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1763315 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1791968 7649198 ~ 7671410 (+)
G42685 NA other downstream 2608517 8465747 ~ 8466312 (+)

Expression


Co-expression Network