znf503 (znf503,LOC107708443,LOC107747464,LOC103355656,LOC102798683)


Basic Information

Item Value
gene id znf503
gene name znf503,LOC107708443,LOC107747464,LOC103355656,LOC102798683
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18619229 ~ 18622295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944967.2
GGAGAACGTCACATCCCCTTGACCCTCCAATCACCTCGGGGTCCCATTTGATTGGAAGGCGGCAAGGGCTTTAATCTCAGACTAATTCAGTTGCTTTTGAAGTGAAAATTTCGGGCAGTTCTCGGGCTGGGAGGAGTAGCGCGTGGAGCTGCGGGAGGAGGCAGAGCAGAGCGCGCAATGCCTGTGGTGTCACGCGCAGCTCCGGATCGGCGATAGCCTCGCGCTGTGCGTCTGCCTTCCGCCACGAGCGAACGGATTATACGAGTTTGTCTTTATTTTCGTCCGTTTTTTCGAAGAAGATCGCATCGAAGTAGTTATTGATGCATAGGACGAACGAAACGCCAACAGAATAAATGAGAATTGGGTCATGAGCACATCGCCCTCTGCTACTGCTCTAAGAAATAGCGATACCGATCTAGCCTGGGAAAGCTGCAGTTCTCGGAATAACAGCTCAGCGAGCATCAACAAGCCTTTTCTCCATCCCGTCCCTCCAACGGACCCTTTACGGCAAGCCAAGCGACTTCCCATCAAGGTTCTGAAAATGCTGACGGCACGCACGGGACACATTTTGCACCCGGAGTACCTCCAACCTTTACCGTCTACTCCGGTCAGTCCAATCGAGCTAGATGCAAAGAAAAGTCCGCTGGCTCTTCTTGCTCAGACGTGTTCTCAGATCGGTAAACCGGACCCTCCGCCTTCCTCTAAACTCTCCTCGGTTACATCAAACGGATCTAGCGAGAAGGAGTCCAAGTCCGGTCCTTTAAAACTGAGCGACATCGGCGTGGAAGACAAATCGAGCTTCAAGCCCTACTCCAAACCAGCAGACAAGAAGGACTCGTCCTCGGGGGTTTCTAGCGGGGAGAAGTCTGGTTTCCGTGTGCCGAGCGCCACCTGCCAGCCGTTCACTCCCGGCACGGGCAGCCCGAATTCCAGCACTTCTGCCTCCCCGATGCCGTCCGACGCCAAAGGAGAGAGGGACGAAAAGAAAGACGGAGACTGCAATAAAAGCTGCAGCACGGACGGCTCTGGAGCTACCGGCGTCAGCCACAGCAGGATAAGCGTGAGCTGTGGTGGAATTAACGTGGAGGTCAACCAGCACCAGGAGAGCACGTCTGCATCCAAGGCCGCTACGTCGGAATCGTCGTCGGCGGTGTCTTCCGCTTCCTCGGCGGCTGTTCTGGGGTCGGGGCTTGTGGCACCCGTTTCTCCGTACAAACCGGGACAGACAGTTTTCCCTTTACCCCCTGCCGGCATGACATACCCGGGAAGTTTAGCTGGGGCCTACGCGGGCTATCCTCAGCACTTCCTGCCCCACGGCGGAAGTCTGGTGAACGCGCAGCTCGCCAGCTCCCTGGGCGCAAGCAAAGCTGGATCGAGCCCATTAGCCGGGGCTTCTCCACCGTCCATCATGTCTGCCAGCCTTTGTAGAGACCCGTACTGCTTGAGTTATCACTGTGCCAGTCACTTAGCGGGCGCGGCCGGTGCCTCGTGCACGCACGACTCAGCCGCCGCGGCCCTCAAGTCCGGATATCCGCTCATGTACCCGACGCACCCTTTGCACGGCGTGCACTCCACGCCACCGTCTTTCGGCGGACACCCTTTGTACCCGTATGGCTTCATGCTCCCCAACGACCCGTTGCCTCACGTGTGCAACTGGGTGTCGGCAAACGGGCCATGCGACAAGCGCTTCTCGTCCTCAGAGGAACTGCTTAACCACCTGCGGACGCACACAGCCTTCACCGGCGCCGACAAGTTGATCTCGGGTTACCCGAGCTCGTCGTCCCTTGCCAGCGCTGCCGCCGCGGCCATGGCGTGCCACATGCACATGCCACCGTCCGGAGCGCCTGGAAGTCCCGGCACACTCGCACTGAGGAGCCCGCATCACGCGCTCGGACTAAGCAGTCGCTATCACCCGTACTCTAAGAGCCCGTTGCCTACTCCCGGTGCCCCGGTGCCCGTTCCCGCCGCTACCGGCCCTTATTATTCTCCATATGCACTGTACGGCCAGAGACTCACCACAGCGTCAGCTCTCGGCTACCAGTGAAACGGACTCACACACCCGAAAATTTAGAGCTTATAAAGATTCAAATATAAAGACTTTTATATCAACGCACCACTGAAGGACTGGATCCGTGGACtccactgtatttatttatgtcagcTTAAAGCGGGCAATAATACAAAAGGAAAACTATTTGAGCAAACTCAGAAGTGCATTATGTTTAAATCTCAGTAGGTAAAAGTGAAACACATGTTAGAGTACTAATAAAATAGGGGTTCTTCAGTTCAACATTCATTTGAAATTGCTATGATTGTATTGTACGTTCTTATTTAATGTCTCattgaaaaaggaaataatttacatttgcatgtttgtttttttttaaagcccaaATTGTCCGCATAATTTTAAATTGCCGTTATTTTTCAGGCGTATACCATGGAGAGAGAATTggtatttttttgtatgtattctggaaaaaaaataagaaacaattctgttccataactgtgtcCTCAGTATTCTTTAATATGACGAATACAATTTACATGTGTGTCTATCCcgaatgttttattattatttacattttgcacTGCCATTAATCCTATAATATCGTAAATCATGATTAAATATAGTCTATAATTCA

Function

symbol description
znf503 Predicted to enable metal ion binding activity. Acts upstream of or within embryonic camera-type eye morphogenesis and hindbrain development. Located in nucleus. Is expressed in several structures, including external yolk syncytial layer; mesoderm; nervous system; neural tube; and optic cup. Orthologous to human ZNF503 (zinc finger protein 503).

NR:

description
zinc finger protein 503-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944967.2 True 2648 mRNA 0.52 2 18619229 18622295

Neighbor

gene id symbol gene type direction distance location
kcnma1a kcnma1 coding upstream 246740 18227260 ~ 18372489 (+)
anxa11a anxa11,LOC108263209,LOC106613295 coding upstream 446042 18158463 ~ 18173187 (+)
mocos mocos coding upstream 469489 18140689 ~ 18149740 (+)
fignl1 fignl1 coding upstream 560063 18056126 ~ 18059166 (+)
klc1a klc1 coding upstream 572362 18018395 ~ 18046867 (+)
comtd1 LOC108444215 coding downstream 61201 18683496 ~ 18686611 (+)
ifit8 LOC108263543 coding downstream 66182 18688477 ~ 18691778 (+)
LOC113538988 LOC108263544 coding downstream 73425 18695720 ~ 18699679 (+)
tet1 tet1 coding downstream 230407 18852702 ~ 18883431 (+)
eif4e1c if4e,LOC108444323,LOC107690176,LOC107747456,LOC107582514 coding downstream 268926 18891221 ~ 18895398 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding upstream 157033 18460673 ~ 18462196 (+)
G48494 NA non-coding upstream 396682 18222068 ~ 18222547 (+)
G48478 NA non-coding upstream 444730 18174300 ~ 18174499 (+)
LOC113541886 NA non-coding upstream 534430 18081617 ~ 18084799 (+)
G48323 NA non-coding upstream 632658 17986281 ~ 17986571 (+)
G48482 NA non-coding downstream 51016 18673311 ~ 18701906 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding downstream 85737 18708032 ~ 18711295 (+)
G48908 NA non-coding downstream 345111 18967406 ~ 18967777 (+)
G48911 LOC108263518,LOC108262933 non-coding downstream 348503 18970798 ~ 18974710 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding downstream 391896 19014191 ~ 19015574 (+)
dlg5a dlg5 other upstream 397179 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 1642200 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 2151879 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 2310331 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 2381687 16234514 ~ 16237542 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 280143 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 404673 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 591912 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 633769 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 719055 19341350 ~ 19356098 (+)

Expression


Co-expression Network