yipf3 (yipf3,LOC107696384)


Basic Information

Item Value
gene id yipf3
gene name yipf3,LOC107696384
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22601556 ~ 22608030 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945034.2
taggctaggtgtttaggaatggcaactcaaacttacaataaccatatatacaggaatattctgatgcctgtacgcatataaacactATATTGGGAATATGGCTGCAATCCGAttatagaccttaaacggaatATTGATGCGAATGTAAACGTAGCCACAGAGTGTTTACGCTGCCGGTCACGTGACCCTGGTATTTGACGCTCGGGTTCCGGAGCAGTGAATCGACTCATCGCCGGTTGAAGGCTGCTGTTGCTTCTTGCTTCACAGCTGCGATGTGGAAATGTTGCTGAATGTTTTTGGCAGGAACAATCGTCTGAATTCGTGTATTTACCGCTGAAAATATAATGagcgtttgtgtgtttgtatagtTACCTCGTAGTCGCACCGCTAGTGAACTTTCTGTTGTAGTGTCGTTACTTTAACGGCTAAAATGTCGGCTTCGGAAGGAGCCAAAAACACGAATACGGAACCGTGGGGTGGTTTTGATGACAACATTGTGATTCAGGGCAGTGGCTCGGCAGTTAtagacatggagaacatggacgACACGTCTGGCTCCAGCTTTGAGGACATGGGAGAGATGCACCAGCGtatgaaggaggaggaggaggtggcaGCCGAGGCCGCGGCTACTGAGGATGACACTGGAGAAGATGGAGAGTTCCTCGGCATGAAGGGTTTAAAGGGCCAGTTAGGAAGACAAGTCGCCGATGAGGTTTGGAAAGCAGGCAAGCGGCAGGCCTCAAAAGCCTTTAACCTGTATGCTAACATCGACATCCTCCGACCTTACTTTGACGTTGAGCCTATTCAAGTGAGAAACAgATTAATTGAATCCATGATTCCACTCAAAATGATCAATTTTCCACAGAAAATTGCTGGGGAGTTGTATGGACCAATGATGCTGGTGTTCACTCTGGTGGCCATCCTGCTTCATGGCATGAAGACTTCGGGAACTGTTATTAGAGAGGGCACACTGATGGGAACTGCCATTGGGACATGTTTTGGCTACTGGCTTGGAACATCCTCCTTCATCTATTTCTTGGCTTACCTTTGCAATTCTCAGATCACCATGCTCCAGATGTTGTCTTTGCTGGGCTATGGTCTGTTTGGCCACTGCGTGGTCCTTTTCGTCACCTACAATGTCCACTTTCACTCCCTGTTCTATATTCTATGGCTGGTAATCGGAGGACTTTCTACACTTCGGATGGTGGCTGTGCTGATTTCCCGTACTGTGGGTAAAACTCCTCGTCTCATTTTGTGTGGCACACTGGCAGCACTCCACATGCTTTTCCTGCTCTACCTGCATTTCGCCTATCACAAGATTGTTGAAGgtaTCCTGGACACCCTAGAAGGACCCAATGTTCCCCCCATTCAGAGAGTGGCCAGAGATGTCCCTAATGTGGCCACTGTTGTTGTGAATTCCACAGTGAAATCTGTGGCTGCAATCATACACTCGCAGTAATCACTTGTTCTGATGCTTTTCTCTTTGGACAAGGAAACGGGTTTGGGAGTAAATGAACTGGGCACAGGAGAGTAACAAAGGGAGTTCGTATCTAGCACCTCAGCTAGGAGTCAGTCCAGCTATCAGTTAAATACAACACATATGACACGATGACCGACATAAGTTATGGTCATGTGGTGGTATAATTTGATCTTGACCCGAGTAGGCTTAGACAAAAAAGGTTTGCCAAACCATTCCCTATCATCACTGCACATGGGTCTTAACTATAAGTTCCCTGAGATCATCTGCTGTTGAAAACCTTGTTAGGCAACAGGAAAATTTGCTCTAAGTTGCCATTATTGGCATGGGACACACAATTGTTTGTATAAAATGGCAACACTAAAGACTCATTAATGTAAGTAAAGTGCCCTGAACTTTGCCTCATGTGAGTGATGCATCACCACATGCACTTAttcatttaaagtttaaagtagGGGCTAGAACTTTGTAACAGGTGAATTTTATTTCACCTGCAATTTACCAGTTTTATAAACACCATTTCATGTCTACTATTGGGCTTTTTCTAACTGTGTGAATTTGTGAGAAATACCTTAAAAATAACAGAAGCTACTCTTGCAAATATGATTCTTGTTAGGACAACGCtatttattatgatattaaaGCTATTGGGAAATTAGAAGAATCCTGTACCCTGCACCTTCAATAGATAGTaatctttaatttaaatttaattggaTTAAAAATATGGAGTTGTAACTGAAAATTGAGACACTGTTAGACAGTGTTATTTAATTAGTCATTCTAGCTAAAGATTCCTAATATTTCTCTAGTTTACACACATAGTTATCGTTTCTGGCTGATAAACCTTGGTATCATTTATTCTAAAAGAACATGTTTGATTGGGCAGACATCTTTGAGAGAATTCTAAATCCACCAttaattatttctaaataaacctgcttatactgtaaatttaaaatttgcagCAGATATTCTGCAGAATTTCTGCAGATCTTGGAGgtccactgaaaatgaaatctgtaaaactggctgtgggttttttttttccccttggtattattatttgatcaaagaaaaaaaaaatgtttattggtCTAAAAGATTTTTACATATTGTTTGTCAACTTCTTAATTCATTTCCAAAATCCCAACTTTGATTAATACTGCAGATATGAAACATGAGGactaagagttttttttttttttttcaagcagaaaaatataatataattggtCAATTTCCTTATTGTACTTTCTACTTTGGGCAGAAATTAATTTAGTATGAGCAGTTTCTTGATGCAGAAATGCACCGATCATGTATTTATGAATTCctttgtgcaatttttttttatatcagttttCTTTTAACTGTCATGTACTCCTCCTTAGACTACATGGAGGAACTGTGGGTGTGAGATTATGGATATCTATGTGCTCATTATTTTGTCTTTGACGTGGACTTTGTATTTATAGGGTTGCTGTACAGAGAAAATTTAGAATAAaagtaatgtattaaaacaa

Function

symbol description
yipf3 Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF3 (Yip1 domain family member 3).

NR:

description
protein YIPF3

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22941 YIPF3, KLIP1; protein YIPF3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945034.2 True 3003 mRNA 0.40 10 22601556 22608030

Neighbor

gene id symbol gene type direction distance location
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding upstream 13912 22571371 ~ 22587644 (+)
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding upstream 336137 22244109 ~ 22265419 (+)
LOC113537563 LOC108263692,LOC108422693 coding upstream 630596 21967741 ~ 21970960 (+)
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 641157 21954905 ~ 21960399 (+)
hcar1-3 NA coding upstream 683888 21914549 ~ 21917668 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding downstream 449 22608479 ~ 22621693 (+)
dlk2 dlk2 coding downstream 88365 22696395 ~ 22720888 (+)
mea1 mea1 coding downstream 134697 22742727 ~ 22745804 (+)
LOC113540824 syndig1,LOC107717853 coding downstream 262860 22870890 ~ 22890869 (+)
si:zfos-1056e6.1 LOC108263310 coding downstream 316491 22924521 ~ 22927550 (+)
G51161 NA non-coding upstream 65119 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 152047 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 264512 22266697 ~ 22337044 (+)
G50938 NA non-coding upstream 313454 22285438 ~ 22288102 (+)
G50936 NA non-coding upstream 349508 22251835 ~ 22252048 (+)
LOC117596907 NA non-coding downstream 121292 22729322 ~ 22736667 (+)
G51358 NA non-coding downstream 350370 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 462291 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 464926 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 466700 23074730 ~ 23076471 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 48804 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 577745 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1482592 21025733 ~ 21118964 (+)
G49862 NA other upstream 2026077 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 2208955 20382346 ~ 20392601 (+)
G51271 znf318 other downstream 176298 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 303114 22911144 ~ 22913552 (+)
G51562 NA other downstream 846398 23454428 ~ 23455549 (+)
G51749 NA other downstream 1089002 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 1185650 23793680 ~ 23834851 (+)

Expression


Co-expression Network