pank2 (pank2,LOC107690147,LOC107733768,LOC107582531)


Basic Information

Item Value
gene id pank2
gene name pank2,LOC107690147,LOC107733768,LOC107582531
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19283096 ~ 19286041 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945113.2
CCTTCCTGTGACCAATCATATGGCTAATGCTTGTGTTGTAAACACAGATGTGAATTCAGCCGGAGACGCAGTTCGCGAATAATAATGGATAATGTTTAGATAAAAAGTGCAAGGATGTGTCCGATTTTAATGCTCTGGTTGTAATTTTAAAGGCTTTCAGAAAGGCGGGCGCACCTCTGTCATGGAGCTGAATGGTTACCACTGTGACAGTGAGGTCAAAGATGAGGACACAACAGAGACACAGCCGTTCCGCTCCAGGGCCGAAGTACCTTGTAGCTTCGTTGCTACAGCGGACCGGGAGCGCAGCCCTGCCGGCGGAGGCGCTCACCCAGAGCGGCGAGTGTCGAACTCGAGCTCGGGGAGACAGAGGATCGACTCGCTGAAGAAAAACAGGCCGCCTTTCCCATGGTTCGGCATGGATATAGGTGGTACTTTGGTAAAACTGGTTTACTTTGAGCCCAAAGACATCACAGCGGAAGAAGAGCAGGAGGAGGTGGAAAGTCTGAAAAGTATCCGCCATTACCTCACCTCACGCACAGCCTATGGCAGAACTGGCATCCGAGATGTTCACCTGGAACTGCCGGACCTGACACTGTGGGGGCGCAGGGGCAGCCTACACTTCATTCGCTTTCCCACACAAGAGCTTCCAGCTTTCCTGCAGATGGGCCGAGACAAGCACTTCTCCAGCCTGCATACCACTCTCTGTGCCACTGGTGGTGGCGCGTACAAGTTTGAGGATGATTTCCGCACAATGGCAGACTTGCAGCTTCTGAAGCTGGACGAGTTGGACTGTCTGATTAAGGGTGTCCTTTACATTGACTCAGTGGTCTCAAGTGGGCCTCCTGAGTGTTACTACTATGAGAACCCCACAGACACGGAGCACTGTGAACCGAAAGCCTACAATCTGGAGAACCCTTACCCTCTGCTCCTGGTCAACATCGGCTCCGGGGTCAGCATACTGGCCGTCTACTCCAAAGACAACTACAAACGCGTCACTGGTACCAGTTTGGGTGGTGGTACTTTCCTTGGACTGTGTTGCTTGCTCACTGGCTGCTCCACCTTTGAAGAGGCGCTGGAAATGGCTTCAAGGGGGGAAAGCACTCGTGTGGATAAACTGGTCAAAGATATTTATGGGGGTGACTATGAGAGATTTGGCTTGCCAGGATGGGCTGTTGCCTCTAGttttggGAGCATGATGTGCAAAGAAAAGCGAGAGTCTGTCTCAAAAGAGGATTTGGCTAGAGCCACACTCGTCACCATCACAAACAACATAGGTTCAATCACACGCATGTGTGCACTAAATGAGGGCATTGAGAGAGTGGTCTTTGTTGGGAACTTCTTGCGGGTGAACACATTATCCATGAAGTTGCTGGCGTATGCTTTGGACTACTGGAGTAAAGGACAGCTCAAAGCTCTGTTCCTCAGACAtgagGGCTACTTTGGTGCTGTTGGAGCGCTGTTGGAACTGTCAAATTCGTCTTGATCATTGCTATCACCTCAAGACTACTACCAAAATTCTCAGTAACTCTGGGGGTTCACCACAGACGCCTTCACTGTCTGGCTATTATCCCATGAGAAGAAGTAAtaatacatgttttattattaatggacATTAATAG

Function

symbol description
pank2 Predicted to enable pantothenate kinase activity. Acts upstream of or within nervous system development and vasculature development. Predicted to be active in cytosol and nucleus. Is expressed in axial blood vessel; caudal vein plexus; central nervous system; and epidermis. Used to study pantothenate kinase-associated neurodegeneration. Human ortholog(s) of this gene implicated in pantothenate kinase-associated neurodegeneration. Orthologous to several human genes including PANK2 (pantothenate kinase 2).

NR:

description
pantothenate kinase 3-like

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945113.2 True 1619 mRNA 0.50 7 19283096 19286041

Neighbor

gene id symbol gene type direction distance location
loxl3b loxl3b,LOC108263239,LOC108441751,LOC107690148,LOC107708481,LOC107678544 coding downstream 1267 19261810 ~ 19281829 (-)
alms1 alms1 coding downstream 47431 19222426 ~ 19235665 (-)
zgc:123321 yipf7 coding downstream 63493 19217614 ~ 19219603 (-)
wdr32 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687,LOC107582526 coding downstream 68935 19203112 ~ 19214161 (-)
pomk pomk coding downstream 71067 19210279 ~ 19212029 (-)
mavs NA coding upstream 1067 19287108 ~ 19294701 (-)
LOC113540998 LOC108262906 coding upstream 15164 19301205 ~ 19302542 (-)
emx1 emx1,LOC108263581,LOC108441775,LOC103045183,LOC107567848,LOC107678523,LOC107733702,LOC107718448 coding upstream 71574 19357615 ~ 19362980 (-)
noto LOC108263580 coding upstream 88268 19374309 ~ 19375581 (-)
eif2ak3 eif2ak3,LOC107683275 coding upstream 383364 19669405 ~ 19700122 (-)
G49184 NA non-coding downstream 31233 19251593 ~ 19251863 (-)
G49108 NA non-coding downstream 92481 19190327 ~ 19190615 (-)
G49053 NA non-coding downstream 230345 19052527 ~ 19052751 (-)
G48975 NA non-coding downstream 313300 18969591 ~ 18969796 (-)
G48970 NA non-coding downstream 325637 18957157 ~ 18957459 (-)
G49215 NA non-coding upstream 114623 19400664 ~ 19400863 (-)
G49232 NA non-coding upstream 141705 19427746 ~ 19428725 (-)
G49481 NA non-coding upstream 402551 19688592 ~ 19688877 (-)
G49484 NA non-coding upstream 428124 19714165 ~ 19715420 (-)
G49584 LOC108263592 non-coding upstream 609657 19895698 ~ 19970294 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 669575 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1621677 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1708674 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1807004 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 2300367 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 30446 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 328676 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 430559 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 896012 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 938868 20224909 ~ 20256520 (-)

Expression


Co-expression Network