fbxw4 (fbxw4,LOC107707737,LOC107716323)


Basic Information

Item Value
gene id fbxw4
gene name fbxw4,LOC107707737,LOC107716323
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14910899 ~ 14936204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945446.2
gtgaacaaCACAAACCACGTGACCTGCTGTCATACTGGAATGGCTCCCACCACTCACTGTGTTATTACGCCCTGAGAAAATGGGATTCTCCATACGCCTGTCTAAAACAGACAAATTTATCGGCTGTAAAGACGTTAATAAACGTCTGAGTAAATCCGGCGTGATAGTGGTGACTGACTGGAAGAGCCCAACATGTTATTCTTTCAGTTACCCGAGGATGTTCTTTACCTAATCTTGTCGTACCTGGACTACAAATCGCTATGTCGCCTCTCTCAAGTTTGCAAGAGAAGCTATCACTTCACTCTGCGCGACGTCGTGTGGAGGAGGATAGCGAAACACTTTATCAACACTGGAATGACACGGGAAGGAACAGACCTATATCCTACCATTGCACTGAAGGACAGAGTGAAGATTTCCCAAAACTGGAGTCATGGTGTTTGTCGTAACAATGTCCTTCTCAAGTGGAAGCTTAACTTGTTGCCGTGGCTACAGCTGGATGGTGATTTGCTGTATCTCTCGCAGGCAGCAGACATTGGAGCTTACGATCTCAGGGGGGCTGAGAGAGGGAGGTTTCAACATAATAGGGTGGACGTTTTTTCAGGACACCAAGAAGACGTGTGTCGATTCACATTGACAGATGCACATCTCATCAGCGCTGGAGGGGATGGGAAGATCATCGTCCATTACAAAAACCGTGATTATTCTGTGGAGTATTATGGCCATAATCAGGAGGTGAACTGTATTGACTGCAGGGGTGAATTGATAATTAGTGGCTCTAGAGACAAGACTGCTAAGgTGTGGACATTAAATCCAGACCAGTTGGGCAAATGTCTTCATACCATCCCTACTTATGACAGAGTGTGGTCAGTGGCAATCAGTCCCTCTCTATGCACCTTCGTGACCGGAACAGCATGCTGTGAAAACTTTGCTCCTCTTCGGATATGGGACACAGAAAGGTGTGACCTGGTGACGTGTCTTGGCACAAAGTTTCGCAGAGGCGCAGGTGTGTTGGATATTGTGTATGAGTCTCCCTTCCAGCTCCTCACCTGTGGATATGACACCTTCATCCGTTACTGGGATCTGCGTGTCTGCTCCAGGAAGAGTGTGATGGAGTGGGAGGAGCCTCATGACAATGCACTTTACTGTATGAAGACCGATAAGAATTATATGATCGCCAGTGGTTCCTCCTACTATGGAGTGGTGCGTCTGTGGGACAAACGGCAAACCCGCTGTttgcagATGTTCCAGCTCACCTCCTCCACCAGTAGCCCAGTGTACAGCCTGTGCTTCAATGCCACACACCTGTATGCCGCCGTCGACTCAGCCCTCTACTCACTGGACTTTAGAACCTCAGGGCCCAGGCCCAAGAGATAAAACAGCTCACTcacaacacaatcacacacacacacacacagttacatgtGCCTTGGCTTTTAAGTCCACATTACACAACTTCACCACCTTTTCCCTCCAGCTCTGACATCGAGCCTTTGACCTTTTACCCTTCCAAAACCTCAGCTTAGAACTTCAGGAACCCCATTAAAATATCTGTACCCAGTGTGGCCTTGGATTGGTGCCACAGATAGTAGCAGATAGTTGTCATTTCTTCACTAATCTGTGTCGCTGGCTGTTGAAGGAGCAGAGGGAGCAGGGTTCATGACCTTCTGTGACCTGAGCTTTAACGGATTTAACACATTGCCAGCGACCTGTGGgattataaaacaaacactGCTCAGAGCTGCCCGAACGCCCCATGGGTATTTATGCTGaagcatatacagtacaataacggttttttttctgctgtgcttgagctgttcattttttcctcaaaaaaattaagttaattCAGTTGACTTGGCTTTGTGCTTTTTGTATTTCTTCTGGTCACAGTTAAAAGACGTTGTGAAGGTGTTGCTTTTATTCGGCAATTGTTCTGTATAGATGCCACTTTAGGCAAATAAAGATTTTATACTGTAAACACA

Function

symbol description
fbxw4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in split hand-foot malformation 3. Orthologous to human FBXW4 (F-box and WD repeat domain containing 4).

NR:

description
F-box/WD repeat-containing protein 4

GO: NA

KEGG:

id description
K10262 FBXW4, SHFM3; F-box and WD-40 domain protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945446.2 True 1985 mRNA 0.46 9 14910899 14936204

Neighbor

gene id symbol gene type direction distance location
fgf8a fgf8a,fgf8,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding upstream 6186 14898822 ~ 14904713 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding upstream 39800 14857929 ~ 14871099 (+)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107588666 coding upstream 237900 14658756 ~ 14672999 (+)
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding upstream 298929 14595202 ~ 14611970 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding upstream 559664 14346597 ~ 14351235 (+)
wbp1la wbp1l coding downstream 10629 14946833 ~ 14961193 (+)
cnnm2a cnnm2,cnnm2a,LOC107585325,LOC107716327,LOC107673921,LOC107588659 coding downstream 41521 14977725 ~ 14994070 (+)
polr1c polr1c,rpac1 coding downstream 88720 15024924 ~ 15029815 (+)
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding downstream 97859 15034063 ~ 15058779 (+)
prom2 LOC108263179 coding downstream 123258 15059462 ~ 15078057 (+)
LOC113541837 NA non-coding upstream 284409 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 522588 14388029 ~ 14388311 (+)
G46217 NA non-coding upstream 622612 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 727253 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 727706 14182991 ~ 14183193 (+)
G46638 NA non-coding downstream 29702 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 77919 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 143609 15079813 ~ 15084310 (+)
G46833 NA non-coding downstream 482825 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 536997 15473201 ~ 15473870 (+)
cgas NA other upstream 542799 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 624357 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1409849 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1876549 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1905576 12982406 ~ 13005323 (+)
borcs7 borcs7 other downstream 36364 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 857202 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1134510 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1188423 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1298310 16234514 ~ 16237542 (+)

Expression


Co-expression Network