polr1c (polr1c,rpac1)


Basic Information

Item Value
gene id polr1c
gene name polr1c,rpac1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15024924 ~ 15029815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945712.2
TTTTGAACACGGAAGTCTACAGTAGGAGGTGGGGCTGGAGGAGGAAAGCGGGCAAAATGGCGGTGCCTATGAGCAACGTGGATGAGATCCGTGACAGAGTGATTTTGGGCGAATTTGGCGTAAGAAATGTTCATTCTACAAATTTTCCTGGTAATTATCCTGGTTATGATGACTCATGGGACCTCAAGAAGTTCAAAAAGAATTTCAGGCTCGATGTTGTTCATATGGATGAGAACACGCTGGAGTTTGATATGGTGGGAATAGACGCTGCCATTGCCAACGCTTTCAGGCGGATATTACTAGCTGAGGTCCCAACTATGGCTGttgaaaaggttttcatttacaACAATACATCTATAATTCAAGATGAGATCCTAGCACATAGGCTTGGCTTGGTACCCATCAAAGCTGATCCTCGTCTTTTTGAGTACAGAAATGCTGGTGATGAGGAAGGCACAGAAATTGACACAATTCAGCTTCAGTTGAAGATCAAATGCACAAGGAATCCCAGGGCATCTAAAGATGCCTCTGACCCCAAGGAACTCTACCTCAATCACATGGtgtattcAAGGGACATGAAGTGGGAACCTATTGGAAATCAGGCTGATGTGTTTGCTGATGCTAACATTGGTCCTGTGCATGGAGACATCCTCTTGGCACAGCTTCGGCCAGGACAAGAGCTGGATATAGTTATGCACTGCGTTAAAGGAATAGGTAAGGACCATGCAAAGTTTTCCCCAGTGGCCACTGCTAGTTATAGGCTACTTCCTGAGATCACATTACTGCAGACCATTGAAGGAGAAAAAGCTGAGAGATTAAAGCGCTGCTTCTCACCTGGAGTTATTGAATTGGAGGATGTTGATGGAAAGCAAGTGGCTAAGGTGGTCAACAGTCGTCTGGATACGTGCAGCAGAGAAGTGCTTAGGCATGACGACCTAAAGAACTTGGTCAAACTTGGAAGAGTGCGGGACCATttcatatTCTCAGTGGAGTCTACTGGAATTTTACCACCTGATGTCTTGGTCAGTGAGGCAATTAATGTACTCATTGCAAAGTGCCAGAAATTTCTGACTGAGCTTGACTCAGTGACTGAAATGGAATAGCCAGAAGGATGTTGGACCACATGTACTGAAGGCAACATTAACAGGACCTCACGACCTTGAAAGTGTTGTAGGATTGGATAGCTGAAGCAGTGCATGATTAGGGAGTGTTTTCTTCCCTAATTATAAAAGCCTTGAGTCCTACAGGAAGCCTGGATGACATTAGATCCTTATCAACTAAGATTATAGTGTTAAGCTAAATGGACATGGCTACAAGAGCTAGTGTTATATTCTCATTCTTAAAACATCTGCTTTGCTCAACGTAGGCATTGCTTGGCTGGTCCTGATGAATGACTGTGAGCTTAAGCTTTATTTTTGGCACATGCCCATGTCTAGACAAAGGCATCAATGGTCTGGTCAAGCCCAGTGTTCATATTTCTCCATAAATTTTGTTTGACGTGAAACATTGTACATTGTTTGTATTAAATTTATTGACAAAATGTCA

Function

symbol description
polr1c Predicted to enable DNA binding activity and protein dimerization activity. Predicted to contribute to RNA polymerase I activity and RNA polymerase III activity. Acts upstream of or within cartilage development; embryonic viscerocranium morphogenesis; and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex and RNA polymerase III complex. Is expressed in several structures, including head; immature eye; midbrain; midbrain hindbrain boundary; and segmental plate. Used to study Treacher Collins syndrome. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 3 and hypomyelinating leukodystrophy 11. Orthologous to human POLR1C (RNA polymerase I and III subunit C).

NR:

description
DNA-directed RNA polymerases I and III subunit RPAC1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03027 RPC40, POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945712.2 True 1545 mRNA 0.43 9 15024924 15029815

Neighbor

gene id symbol gene type direction distance location
cnnm2a cnnm2,cnnm2a,LOC107585325,LOC107716327,LOC107673921,LOC107588659 coding upstream 30854 14977725 ~ 14994070 (+)
wbp1la wbp1l coding upstream 63731 14946833 ~ 14961193 (+)
fbxw4 fbxw4,LOC107707737,LOC107716323 coding upstream 88720 14910899 ~ 14936204 (+)
fgf8a fgf8a,fgf8,LOC107673879,LOC107716294,LOC107696243,LOC108442712,LOC107585369 coding upstream 120211 14898822 ~ 14904713 (+)
slc2a15a slc2a15a,LOC108262874,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370 coding upstream 153825 14857929 ~ 14871099 (+)
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding downstream 4248 15034063 ~ 15058779 (+)
prom2 LOC108263179 coding downstream 29647 15059462 ~ 15078057 (+)
nsmce4a nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317 coding downstream 55381 15085196 ~ 15090877 (+)
tacc2 LOC108263494 coding downstream 62015 15091830 ~ 15156743 (+)
ly6pge si:ch73-28h20.1,LOC107673896,LOC107585320 coding downstream 127942 15157757 ~ 15160085 (+)
G46713 NA non-coding upstream 9743 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 12935 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 398434 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 636613 14388029 ~ 14388311 (+)
G46217 NA non-coding upstream 736637 14286650 ~ 14288287 (+)
G46765 hps6 non-coding downstream 49998 15079813 ~ 15084310 (+)
G46833 NA non-coding downstream 389214 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 443386 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 681322 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 863766 15893581 ~ 15896079 (+)
borcs7 borcs7 other upstream 50856 14972568 ~ 14974068 (+)
cgas NA other upstream 656824 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 738382 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1523874 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1990574 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 763591 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1040899 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1094812 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1204699 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 1255307 16285122 ~ 16308898 (+)

Expression


Co-expression Network