hadh (hadh,LOC107594428)


Basic Information

Item Value
gene id hadh
gene name hadh,LOC107594428
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7150285 ~ 7155500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945753.2
GAGACGTGACCACGTGACCAGGCTGACTTTTCCCCCGGTTTAGAGGAGAGTCGCTGTCATACAGTCATGGCGTTCTTCACTCACCACATCACCCGAGCTCTGAGCTCTTCTACCGTCCGAAACGCCGCCATTAAACATGTTACTGTTATCGGAGGAGGATTAATGGGCTCGGGAATCGCGCAGGTCGCGGCGGCGACTGGACATTCAGTAGTGCTGGTGGACACGTCCGAGGACATCCTGAAGAAATCCACCAAGGGTATTGAGGGCAGCCTGAAGAGAGTTGTGAAGAAGAAGTTTGCAGACAAACCCGAGGCCGGAGAGGAGTTTGTCCAGAAGGTGTTGAAGAACATTTCCACGAGCACAGACGCTGCGTCAGTGGTGCAGAGCACTGATTTGGTGGTGGAGGCCATCGTGGAGAACCTCAGAGTGAAACAGAGTCTCTTCTCTACTCTGGATAAAGTGGCACCAGAACACACCATCTTTGCCAGCAACACATCCTCTCTTCCTATTGCGGATATCGCCGTCTCTACAGCTCGCTTAGACCGGTTGGGGCTCCATTTCTTCAACCCCGTCCCTATGATGAAGCTTGTGGAGGTCGTCCAGGCTCCAGGAACAAGCCAAGAAACATTTAACGCACTCCTCGATTTCAGCAAAGCATTAGGAAAGCATCCAGTGTCATGCAAAGACACTCCAGGCTTTATTGTCAACCGGCTGCTCGTGCCTTACCTAATGGAGGCTGTGCGACTACATGAACGAGGTCACGGTTCCAAAGAGGACATCGACGTAGCCATGAAGCTCGGAGCCGGTTATCCCATGGGTCCTTTTGAGCTTTTGGACTACGTGGGATTGGACACGTCCAAATTTATCATTGACGgtTGGTATCAGATGGAGCCGGAAAACCCATTGTTTTCTCCAAGTCCGCTTCTCAACAAGCTAGTGTCCGAGGGCAAGCTGGGCAAGAAAACCGGAGAGGGTTTCTACAAGTACAAATAAGCCGAAGTGGGATGAACCTGGACTCTTCCTGGTCAGAGAACAAAAATCATTAACGCATGCAGAATGTCCAGAGAGTTGGAATCGGACTAACAGATCATTAAACAGCAATTGTgcaacagttttaaaaaaagaaagaaaagaaatagaaCAAACACTAGTGCCTTGCTGTAATGACATGTTCAGAACAGATTATTATAATTTCTGATCTTGTCAGCTTTGTATGTCAgtgctaaaattaaaaaagtaatttttttaaagagtgaaGTCTTCAAATGTGCTGTACTGACtggtttgaaaatgtaaaaatgtcacttttttagTAATTATAGATGGCGGCTTGTGTATCTTTTATACATTACACATCCATTTAAATCAGCAAGCATGCAGAAACACGCCAGCTATGCAAAGACTTGTGTCATGTGGAAGAAATAAAATGCCAGTGAGCTCAA

Function

symbol description
hadh Predicted to enable 3-hydroxyacyl-CoA dehydrogenase activity and NAD+ binding activity. Predicted to act upstream of or within fatty acid metabolic process. Is expressed in liver. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 4. Orthologous to human HADH (hydroxyacyl-CoA dehydrogenase).

NR:

description
PREDICTED: hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0070403 NAD+ binding molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945753.2 True 1442 mRNA 0.47 9 7150285 7155500

Neighbor

gene id symbol gene type direction distance location
LOC113544242 LOC108262960,LOC108429574,LOC103032979,LOC107594430 coding upstream 1160 7142438 ~ 7149125 (+)
sgms2a sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470 coding upstream 9375 7126787 ~ 7140910 (+)
tbck tbck,LOC107757006,LOC107675790,LOC107594431,LOC107729351,LOC107684277 coding upstream 232630 6844872 ~ 6917655 (+)
dkk2 dkk2 coding upstream 354777 6779406 ~ 6795508 (+)
papss1 papss1 coding upstream 402221 6718851 ~ 6748064 (+)
LOC113541438 mcub,LOC108262756 coding downstream 136221 7291721 ~ 7315462 (+)
LOC113542004 LOC108263504,LOC108263505,LOC108263506 coding downstream 187786 7343286 ~ 7346567 (+)
LOC113541239 NA coding downstream 198568 7354068 ~ 7356693 (+)
LOC117596353 LOC108263508 coding downstream 201234 7356734 ~ 7358561 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding downstream 228572 7384072 ~ 7393247 (+)
G41951 NA non-coding upstream 133360 7016704 ~ 7016925 (+)
G41857 NA non-coding upstream 181446 6951392 ~ 6968839 (+)
G41752 pkd2 non-coding upstream 447479 6662282 ~ 6702806 (+)
G41654 NA non-coding upstream 548122 6601912 ~ 6602163 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding upstream 551318 6598703 ~ 6598967 (+)
G42093 NA non-coding downstream 192659 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding downstream 205700 7361200 ~ 7364931 (+)
G42208 NA non-coding downstream 266591 7422091 ~ 7422296 (+)
LOC117596850 NA non-coding downstream 317870 7473370 ~ 7475040 (+)
G42295 NA non-coding downstream 485435 7640935 ~ 7644922 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 921600 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1792425 5263582 ~ 5357860 (+)
G41047 NA other upstream 1808535 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2378681 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 3315659 3831867 ~ 3834626 (+)
G42075 NA other downstream 48450 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 465045 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 493698 7649198 ~ 7671410 (+)
G42685 NA other downstream 1310247 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 1314124 8469624 ~ 8469881 (+)

Expression


Co-expression Network