znf330 (znf330)


Basic Information

Item Value
gene id znf330
gene name znf330
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6253523 ~ 6267711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945875.2
ATTTGAGACAATATTTTGCTACTTGCTCTGGCCGGAACTCATATTAGTAGCGTTAGTTTCCAGGACGGAGCGATATCGAGGGCGGACCTGTAGATCAGCTGCGAGCGGAACTTCCGGTGTGAGCTCAGCCAGCAAGCCGTGCGGAGAGACAcTGTGTACTAGAGCACTGACTCACATCCACAATGCCCAAGAAGAAGACGGGAGCTCGCAAGAAGGCTGAGAGCCGGAAGGAGCGAGAGAAACAGAACCGAGCCAACAGAGAGCATGTCGATGTCGCAAAGCATCCGTGCAACTCGGCCATGGACTGTGATAAGTGTCTGAGACGACAGAAGAACAGAGCATTTTGTTACTTCTGTGCGTCGGTGCAGAAGCTCCCCATGTGCGCTCAGTGTGGTAAAACGAAGTGCATGAAGTCCTCAGACTGTGTGATAAAACACCCTGGTATCCACAGCACAGGCATGGGCATGGTGGGAGCAATATGTGACTTCTGCGAGGCCTGGGTGTGCCATGGAAGGAAGTGTCTGAGCACACACGCCTGTTCCTGTCCACTGTCAGAGGCAGACTGCATCGAATGTGACCGCAGTGTGTGGGAGCATGGAGGTCGCATCTTCCGCTGCTCTTTCTGTCACAACTTCCTGTGCGAGGACGATCAGTTTGAGCATCAGGCCAGCTGCCAGGTTCTGGAGGCAGAGACTTTTAAATGTGTTTCATGCAATCGACTTGGCCAGCACTCATGTCTCCGATGTAAGGCCTGCTTTTGTGATGAGCACGCTCGAAGCAAAGTGTTTAAGCAAGAGAAAGGCAAGGCGCCTCCGTGTCCCAAGTGTGGCCACCAAACGCAGGAGACTAAAGACCTCAGCAtgtccaCTCGGACTCATAAGTTTGGCCGGCAGAGCGGCGCTGATGACGACAGCTACTGTTACGGAGCGTCGGGTTACGATTCCTACTGGAAAAGCACCGCCTCCGGAGGAGCTGCAGACCAGGAAGACGACTACATTGGAGACGATGAAGATTACGAGGACGAGGATGACGACGAcgaggaagatgaggaggaagacgaggaagaagatgaagatgaggcTGAGGCTGAAGCAGTGGATACACTTAACAACCTTAGTCTCGGTGTGAGCTCAGCCAGTGAAGACAAATGAAGACTAATTAGATCAAGTTGGATTAATAGATTCACAGCTGTTTCAATGTTTATGACAAAGTTCTATTATTAAAGATTACCTTTAAAATTTG
>XM_034302452.1
GATTTAATAACCTCTGAGTGGAAATTTTCCAGGACGGAGCGATATCGAGGGCGGACCTGTAGATCAGCTGCGAGCGGAACTTCCGGTGTGAGCTCAGCCAGCAAGCCGTGCGGAGAGACAcTGTGTACTAGAGCACTGACTCACATCCACAATGCCCAAGAAGAAGACGGGAGCTCGCAAGAAGGCTGAGAGCCGGAAGGAGCGAGAGAAACAGAACCGAGCCAACAGAGAGCATGTCGATGTCGCAAAGCATCCGTGCAACTCGGCCATGGACTGTGATAAGTGTCTGAGACGACAGAAGAACAGAGCATTTTGTTACTTCTGTGCGTCGGTGCAGAAGCTCCCCATGTGCGCTCAGTGTGGTAAAACGAAGTGCATGAAGTCCTCAGACTGTGTGATAAAACACCCTGGTATCCACAGCACAGGCATGGGCATGGTGGGAGCAATATGTGACTTCTGCGAGGCCTGGGTGTGCCATGGAAGGAAGTGTCTGAGCACACACGCCTGTTCCTGTCCACTGTCAGAGGCAGACTGCATCGAATGTGACCGCAGTGTGTGGGAGCATGGAGGTCGCATCTTCCGCTGCTCTTTCTGTCACAACTTCCTGTGCGAGGACGATCAGTTTGAGCATCAGGCCAGCTGCCAGGTTCTGGAGGCAGAGACTTTTAAATGTGTTTCATGCAATCGACTTGGCCAGCACTCATGTCTCCGATGTAAGGCCTGCTTTTGTGATGAGCACGCTCGAAGCAAAGTGTTTAAGCAAGAGAAAGGCAAGGCGCCTCCGTGTCCCAAGTGTGGCCACCAAACGCAGGAGACTAAAGACCTCAGCAtgtccaCTCGGACTCATAAGTTTGGCCGGCAGAGCGGCGCTGATGACGACAGCTACTGTTACGGAGCGTCGGGTTACGATTCCTACTGGAAAAGCACCGCCTCCGGAGGAGCTGCAGACCAGGAAGACGACTACATTGGAGACGATGAAGATTACGAGGACGAGGATGACGACGAcgaggaagatgaggaggaagacgaggaagaagatgaagatgaggcTGAGGCTGAAGCAGTGGATACACTTAACAACCTTAGTCTCGGTGTGAGCTCAGCCAGTGAAGACAAATGAAGACTAATTAGATCAAGTTGGATTAATAGATTCACAGCTGTTTCAATGTTTATGACAAAGTTCTATTATTAAAGATTACCTTTAAAATTTG

Function

symbol description
znf330 Predicted to enable zinc ion binding activity. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human ZNF330 (zinc finger protein 330).

NR:

description
PREDICTED: zinc finger protein 330

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945875.2 True 1242 mRNA 0.51 10 6253523 6263244
XM_034302452.1 False 1211 mRNA 0.51 11 6253523 6267711

Neighbor

gene id symbol gene type direction distance location
il15 NA coding downstream 10384 6229644 ~ 6243139 (-)
usp38 usp38 coding downstream 412753 5825410 ~ 5840770 (-)
hhip hhip,LOC107654904 coding downstream 721043 5498440 ~ 5532480 (-)
LOC113541269 NA coding downstream 768911 5470957 ~ 5484612 (-)
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding downstream 796343 5445363 ~ 5457180 (-)
elmod2 elmod2,LOC107594343 coding upstream 116889 6384600 ~ 6392522 (-)
herc3 herc3,LOC107684306,LOC107583224 coding upstream 282135 6549846 ~ 6583135 (-)
LOC113542150 LOC108263070 coding upstream 317074 6584785 ~ 6602144 (-)
herc5.1 NA coding upstream 336863 6604574 ~ 6620882 (-)
LOC113541261 LOC108263069 coding upstream 355758 6623469 ~ 6641622 (-)
G41300 NA non-coding downstream 377132 5876101 ~ 5876391 (-)
G41174 NA non-coding downstream 652380 5599984 ~ 5601143 (-)
G41114 NA non-coding downstream 972300 5277951 ~ 5281223 (-)
LOC117596884 NA non-coding downstream 988734 5261191 ~ 5264789 (-)
G40992 NA non-coding downstream 1442098 4809868 ~ 4811425 (-)
G41491 NA non-coding upstream 27521 6295232 ~ 6302088 (-)
G41563 NA non-coding upstream 103944 6371655 ~ 6371866 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 267993 6535704 ~ 6538550 (-)
G41768 NA non-coding upstream 409419 6677130 ~ 6680273 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding upstream 526868 6794579 ~ 6797620 (-)
gab1 gab1 other downstream 434010 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1025556 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 1347284 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 1644073 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3218970 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 893763 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 1171193 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1866930 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 2202275 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 2202647 8470358 ~ 8470429 (-)

Expression


Co-expression Network