LOC117596357


Basic Information

Item Value
gene id LOC117596357
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7716040 ~ 7735909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301226.1
CATACCACTACTCATTTGTCTACTTTTCTGTTGACTTCACAAAgGGACTTTTTCCTTCAAATTGTTGTGATTTCATATTACTGTGGTGCAATGTCTGCAAAGGCAAAGAAGACAGTTACTGATCAGTCAGTACAGATTGTTTTAATTGGCGCTACTGGCTCTGGTAAGAGCTCTTCTGgaaacacaatattaggcaaaaAAGAGTTCAAATCAGAGGCATCTGCAAAATCTGTGACCTGCAGCTGTGAAACTGCTACAGGGACAATCAATGGCTGTCAGGTTAAAGTAGTGGATACTCCAGGCTGGGACTGCACGGAACTCACTGAACCTGAGATCATGTCCCAAATAAAACAGGCTCTACAATGTCTTAATGGACCTTACTCCTTTCTCCTGGTCATACGTGTTGGCTCTATGGAATCTGAAGAAGAAATTAGTAAAATCTATGGACTTAaaagggtgcttggaccctCCTTTCTGGATCATACCACAATCCTGTTTTCACGCAGTGATGACCTGGAGGGGAAAGCTCTTAAGGACTTTATTAAGGAAGGAGGTAAAGAGTTCCGTGATCTGTTAAAGCAGTGTGGTGACAGACACCACTGCTGGAACAACAGAGATAACAGAGCTGATGAGGCAGTGGAAGAACTGCTAAAGGATttgaaaaagacagagacaatAAATTCACATTCAGTGAAGACTTTCcaagacaaaataaacaataaggaaaaaaaaccttctgcTTTTACTTCTCATGGTGACAAGCAAGAAATTGCACTGACTAACAGAAAGAGGTCAAGAGATGCAGTAGACCTAGGAACACATATGTCTGAAAATCAAatcagagttttattccttGGAATGAACAGGGTAGGAAAGACTTCAAGTATCAATACCCTTCTTGAAAAATGTGTACAAAGTGAAATCGGAGGAGATGCAGTTTATACACACCCTAGGTCTGGACTGAGTCTGAAGCTGATAGAATCTCCTGGCTTTGATGATAATCTGGAACAAATCCAGGAGGCCATCTCCAAATCTGTGTCTGACTGCCTTCCTGGACCTCATGTCATTATTATAGTGCTGAGCGTGGAGCGCTTCACTCCAGCCACAAAGACAGCCATGAAACGTGTACAAGACTGCCTTGGACAAAATGCCAGAAAAAGCACAATGATTCTTTTCACTGGAGAGGATAATTTGGAGGGCAAACCCATTGACCTCTTCATTCAGGAAAATCaggatctcagtgactttgtgcAAATACATGAGAACCGCTTTCATGCACTCAACAACAGAGACATCAGCAATGAGACCCAAGTGAATGAACTGCTGAAGAAGATTAATGACATGtatgaacaaaataataaagaattttaCACGTACATGCAAGATTGTCGAGACTCCAATTACTCAAAAggaataAAGTCTATAATaggcagcagcaacagcaatataaaagaatttccaactGTCCTGCAGAATGCTGCTACCTTGTTTAGCAAGACTACTGGTCTCTTTTTGAAGAAGAATACTCAGGCTTCACCCGGGGATGACTgGCGTTTTGACTTGCATCAGCCACTATATGTTTGTCAAACGTGCCAGCATCAGTGGACCCCTGACTTGAAGGACCTCCTTAGGAGTGGATATTGGCCAGCCTCTGTCACCAGTTCCACACTTTATACACTGGACCTCCTGAGCTCCTTTCAGGAACTCAAGGTCATCTCTCCGGGATTCTCTAGACAAGCCTTCGCAAAGCTGCTGGAGCATCGCACTAAGATTGGAGGAAGATGGACAGCAGCGAGGGAGACATCAAGGAGGGCTTCCAAATTGGATGAAGAGACGATGGAGATTGCAGTGTGTCGCCATGGATTCCTTCTGAAAGCTCTTAATGTGTACAGGGAGGAGATATTTGCCTACCCTCTGTATCTTCAGAAGGAGCTCATGCCAGCCAAGGCGCAATTCTTTGCAATGGATGTGGCTTGCAAATATTGGCCATACTTGGAGAAAGCTGCTAGTGTCCTTCCTGCTCTTCAGGATCTGACCACAATGAAACCTTTCCTCAGTGTGATGCATGCTCAAGCCCATGCTACTAATGTGACGCCTCACATCAAGCAGAAGAAGAAATGCATGAGGACCAGGAGCTACCAGTTGCGTGCCTGTTTTACAATGAAATCAGAAGACAATGTTGTGTCGTATAAACCGGGTCCGCTCCTGAGGACTGCTGACCTCGACGCTGCGGCCGACCCCTCTGACGTGGAGCTGGGCACTGGGGATCATCGGGGGAGAGGAGGATCGTTCACAGGATCAGGCTCTGTGGAGGAATCAGAAACAAGAGGGACAGGCGCAGTCGGATATCCCTTGCGGAGAGCCACACCTTCTGCCCGGGTTGGAATTTGGGCGTTTCACTTCTCCAAGCATCAGCGTGGACTTTCTGATGGCGCACCGCCCGTTGCAGGTGGTGATGAGCTGCTTCCCAGACCCTCTACCTCTCCTGGAACCAATGGTCAACTGCTGGTACCTCTGATGGTTCCCCAGTCCATGGGAAAAGAGGGGGTTGGAAGCCGAGTACACATTGAAATGGGGTTAGGCCCATGGCAGGTTGACGGAGGGAGTTCTGTGTGTATTTGGCCCAAGCGAGGAACCGACTCCAGGAGGTCTGGTGGCTGTGGCATTTTCGGGACCTGGTGGAGCTGGTTCCGTGGCTGCTGCCTTGGCTATTTCCTCGTCCAGGGACCAGTGTATGGGACTCACCAATACCTTTGGGGGCAAGATGGGTTCTGGTTCATCAGGGGCATGAAGACGGTTTTGGTGGTCAGTGAGGACAAGGAAGGGATGCTGAGCCCCCTCCAACCAGTGCCTCCACTCTTCCAGTGCCAACTTGATGGCCAGCAATTCACTGTTCCTGATGTCAGAGTTCTGCTCTGCTGGGGACTTGATAGCTTGGACCTTCCCCTTATCCATCCAGACGCCTCTGGCAATAATCTGATAACCACGGAAGGTAGTCGTGGGTTGGTGGAATGTGCATTTCTCTGCCTTAAGGTAGAGCTGATGGTCCCGGAGTCTCTGGAGGACCTTCGACAAGTGCTGGAGATAGGGGGCGTTGACAAGACCATAGGGCATAACTCGGTACTCGTAGTGGCCAGTGGGGGTAATGAACgcagtcttccactcatccccctcTCGTATCCGGATGAGGTTGTATGCACTGCGAAGGTCCAACTTGGTGAATATCCGGGCACCCCGGAGTTGTTCCAATGCTGCTGGGACAAGGGAAAGTGGTGTGGTGCAATGTCTGCAAAGGCAAAGAAGACAGTTACTGATCAGTCAGTACAGATTGTTTTAATTGGCGCTACTGGCTCTGGTAAGAGTTCTTCTGGAAACACAGTATTGggaaaaaaactgttcaaaTCAGAGGCATCTGCAAAATCTGTGACCTGCAGCTGTGAAGCTGCTACAGGGACAATCAATGGCTGTCAGGTTAAAGTAGTGGATACTCCAGGCTGGGACTGCACTGAACTCACTGAACCTGAGATCATGTCCCAAATAAAACAGGCTCTACAATGTCTTAATGGACCTTACTCCTTTCTCCTGGTCATACGTGTTGGCTCTATGGAATCTGAAGAAGAAATTAGTAAAATCTATGGACTTAaaagggtgcttggaccctCCTTTCTGGATCATACCACAATCCTGTTTTCACGCCGTGATGACCTGGAGGGGAAAGCTCTTAAGGACTTTATTAAGGAAGGAGGTAAAGAATTTCGTGATCTGTTAAAGCAGTGTGGTGACAGATACCACTGCTGGAACAATAGAGATAACAGATCTGATGAGGCAGTGGAAGAACTGCTAAAGGAtgtgaaaaagacagaaatgacaAACCCAAGTTCCCAAGACAAAATGAAACTCTTCTGCTTTTTCCTCTTATGGTGAGCAGCAAGAAAATGCAGTGACTAATAGATAGAGATCGGGATGTCTGAAAATCAAATCAGAGTTTTATTTCTTGGAAGGACAGAGTGGGAAAGACCTCAAGCATCAATACACTTCTTGAGAAATGTGTACAAAGTGAAATCGGAGGAGATGCAGTTTATACACACCTTAGCTTTGGACTGAGTCTGAAGCTGATAGAATCTTCTGATTTTGATGATAATCCGGAACAAATCCGGGAGGCCCTCTCCAAATCTGTGTCTGACTGCTTTCCTTGACCTCATGTCATTATTATAGTGCTGAGAGTGGAGCTCTTCACTCCAGCAACAAAGACAGCCATGAAACTTGCACAAAGTTGTCTTGgacaaaatgacagaaaacacacaatgaTTCTTTTCACTGGAGAGGATAATTTGGAGGGCAAATCCACTGAAATCTTCATTCAAGAGAATCATCATCTCGAAGAATTAGTGAAAATACATAAGAATGGATGTCATGTACTCAATAACAGAGACACCAGCAATGAAATCCAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301226.1 True 4455 mRNA 0.46 13 7716040 7735909

Neighbor

gene id symbol gene type direction distance location
LOC113543264 NA coding upstream 3494 7704449 ~ 7712546 (+)
htra3a LOC108263851 coding upstream 21513 7680769 ~ 7694527 (+)
LOC113543305 LOC108262750 coding upstream 38181 7675236 ~ 7677859 (+)
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 295111 7413508 ~ 7420929 (+)
LOC113543274 LOC108263610 coding upstream 307924 7396425 ~ 7408116 (+)
gpr78a NA coding downstream 13727 7749636 ~ 7755159 (+)
cpz LOC108263841,LOC108434808 coding downstream 21701 7757610 ~ 7771338 (+)
lrpap1 lrpap1,LOC107749950,LOC107551171,LOC107714242,LOC107556528,LOC107674255 coding downstream 333912 8069821 ~ 8080290 (+)
paip2b paip2b,LOC108263850,LOC107551309,LOC107674237,LOC103039606,LOC105904045 coding downstream 705876 8441785 ~ 8445916 (+)
dok1a LOC108262454 coding downstream 712748 8448657 ~ 8452951 (+)
G42295 NA non-coding upstream 71118 7640935 ~ 7644922 (+)
LOC117596850 NA non-coding upstream 241000 7473370 ~ 7475040 (+)
G42208 NA non-coding upstream 293744 7422091 ~ 7422296 (+)
G42093 NA non-coding upstream 322256 7348159 ~ 7393784 (+)
G42442 NA non-coding downstream 130766 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 173515 7909424 ~ 7909698 (+)
G42522 NA non-coding downstream 439576 8175485 ~ 8176073 (+)
G42531 NA non-coding downstream 454121 8190030 ~ 8190247 (+)
G42498 NA non-coding downstream 460963 8196872 ~ 8197242 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 44630 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 85900 7620545 ~ 7630140 (+)
G42075 NA other upstream 495017 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1487355 5895431 ~ 6228685 (+)
G41047 NA other upstream 2374290 5318534 ~ 5341750 (+)
G42685 NA other downstream 729838 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 733715 8469624 ~ 8469881 (+)
sprn sprn other downstream 2816350 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2858665 10594574 ~ 10608704 (+)
dntt dntt other downstream 3363684 11099593 ~ 11207862 (+)

Expression


Co-expression Network