LOC117596360


Basic Information

Item Value
gene id LOC117596360
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8053494 ~ 8069324 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301237.1
ctcaatCATTAgttattatcagtaataatgTAGTAAATATGTTGAAAAGGAGCTGATAGATGAATCTAAGCATTCATATGTACTTAGTCAGCCACTTTGAATAATAACAGCAACGGAATTCCGACAATACACAGATATGACAGCGAGCATTTGGGATAATCCAAGCAGAACCCTCCATTAACATTAAGAAAACTTTCCCAGATGGAGAGACACATTAACTCTGTGTTATATGATGACGGCGATGAAAAGCTGACGTGCTCGgtgatttcacacacaacagggTCAGGGGCTTCGAGGGGCCGCAGGATCCCCAGGACTGAGAGGAGAACCAGGAACCACAAACCGATCCAGGACTCTCCATGGTTATCTGAGATCCCTAAGAAGTTCTGCAGCAGTTACAGGACCAAAAGCTCAAGCCAGAAGAAGCAAGCCTCTAATCTGTCAATGGGAGATGGGAGATTTAAACAGAATGGCTGGTTTCTTCCAACACCAGAGAAGCCTTTCCTGGAGGACATGCTGTCTGATAATCCCCGGTATCTCAGCAATACCCAGCTGAAGCCTTTAGTGTACTGGGAGGCAGCTGCTGCTACACTGCCTGAATATCAAGGACCATGGACTGAAGACGTCAAGGTGATGACCAATGAGCCCAATCAACCAGCTGCCATGGCCTGGGCTGGGCTTCTGTGTTTCCCCTCTGCAGCATATATAAACCCCGGTTCTCCAGTCACTCATCACCAGATCGTTCCGGCTTCCAGTGTGGTTCACGTCTTCCCCAGTCTGCTCGCCTGCATTCCACTAGGCCCAGCCCTACTTTGTCTTTCCTGTGGCTCACTGACAGAGCCTTTGACTCTCACGCTGCTGACCCAAGCTCGAATCATGGCCTCAAAGGACGTGCTGGATCGTGTTCCTATCCTCTCCAATCCTCAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301237.1 True 930 mRNA 0.48 5 8053494 8069324

Neighbor

gene id symbol gene type direction distance location
adra2c adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202 coding downstream 143520 7907228 ~ 7909974 (-)
hmx1 LOC108262852 coding downstream 223948 7826634 ~ 7829546 (-)
hmx4 LOC108262851 coding downstream 228018 7823130 ~ 7825476 (-)
zgc:153642 NA coding downstream 337593 7702652 ~ 7715901 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding downstream 407419 7630169 ~ 7646075 (-)
dok7 dok7 coding upstream 13727 8083051 ~ 8123270 (-)
htt htt,LOC107679870 coding upstream 151275 8220599 ~ 8270117 (-)
trnam-cau_1 NA coding upstream 397660 8466984 ~ 8467055 (-)
trnam-cau_2 NA coding upstream 398712 8468036 ~ 8468107 (-)
trnam-cau_3 NA coding upstream 399747 8469071 ~ 8469142 (-)
LOC113544822 NA non-coding downstream 73731 7977141 ~ 7979763 (-)
G42426 NA non-coding downstream 232633 7820650 ~ 7820861 (-)
G42401 NA non-coding downstream 359001 7693214 ~ 7694493 (-)
G42400 NA non-coding downstream 362467 7690711 ~ 7691027 (-)
G42397 htra3a,LOC108263851,LOC108434764,LOC107674193,LOC107752916,LOC107556529 non-coding downstream 365805 7687297 ~ 7687689 (-)
G42642 NA non-coding upstream 120411 8189735 ~ 8190276 (-)
G42650 NA non-coding upstream 134873 8204197 ~ 8204405 (-)
G42665 NA non-coding upstream 229856 8299180 ~ 8299444 (-)
G42671 NA non-coding upstream 311016 8380340 ~ 8380715 (-)
G42894 NA non-coding upstream 423744 8493068 ~ 8493304 (-)
maml3 maml3 other downstream 463831 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 848795 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 2233981 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2825527 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 3147255 4893902 ~ 4906239 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 65317 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 400662 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 401034 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 413979 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 685590 8754914 ~ 8783798 (-)

Expression


Co-expression Network