prkcha (prkch,LOC107707065,LOC107675581,LOC107757130)


Basic Information

Item Value
gene id prkcha
gene name prkch,LOC107707065,LOC107675581,LOC107757130
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33329005 ~ 33336795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301269.1
CTTACTTAAAGTGTGATGGATCCTGTGCTctttctatgtgtgtgttacaggggtGTTTTTGGAAAACAGGGATACCAGTGTCAAGTGTGTACTTGCGTCGTCCACAAACGGTGCCATCAGCTTGTCGTCACTGTGTGTCCACGCATGAAGAAACCTGCCAAAGAACagacgGTGAATCAGGGTTTCAGCATTAACGTTCCCCACAGGTTCGATGTGCATAATTATAAGGTTCCTACGTTCTGTGATCACTGTGGATCTTTACTGTGGGGCCTCATGAAGCAGGGACTGCACTGTAGCAtctGTAAGATGAACGTTCATATCCGCTGTAAGGGCAACGTCGCACCGAACTGTGGCGTGAACAACGTGGAGCTTGCTAACAAATTAGCGGAGATGGGACTTCAGCCGGGAGGGACGATAAAGCGCAACacactgaaccCATCTGCCCTAGAATCCTCCTCTCATCGTGTCAGTGTGAAGAAAGGTGTGTCTCCACAAGAGAATAAAGGTCGAACCTTGCACATCGAGGACTTTACATTCCTACAGGTTCTTGGCAAAGGCAGCTTCGGcaaggtgatgcTGGCCCGCCTGAACGACACCGATTGTGTATTCGCCGTGAAGGTTTTGAAGAAGGACGTGATTCTGCAAGATGATGATGTTGAGTGCACGCTGACGGAGAAACGGGTGCTGACGCTCGCACACTCACACCCCTACCTCACACACCTGTACTGCTGCTTCCAGAACCTGGAACGCCTGTTCTTCGTGATGGAGTTTGTGAACGGCGGCGATCTCATGTTCCACATTCAGAAGTCGAGGAAGTTTGAGGAGAACCGAGCTCGATTTTACGCAGCCGAGATCACCTCTGCGCTCATCTTCCTCCACGGCAAGGGCATCATAtacagggaTCTGAAGCTGGATAACGTGCTGTTGGATCGGGATGGTCACTGTAAGCTGGCGGATTTTGGGATGTGTAAAGAGGGGATGTTTGAAGGAGCCGCTACTGGAACCTTCTGTGGAACTCCAGATTACATCGCTCCCGAGatcctGCAGGAGATGCTGTACGGGCCGTCGGTTGATTGGTGGGCTCTGGGCGTGCTCCTTTACGAGATGCTctcaggccacgccccctttgAGGCAGAGAATGAGGATGATTTGTTCGAGTGCATTCTGAATGAGGAAATCGTTTACGCGTCGTGGTTGAGCGCCGAAGCCGTGGACGTCCTTAAagctCTCCTGACGAAGAATCCGACTCGTCGCTTGGGCTGCGTGGCGGCGAGCGGTGGAGAAAACGCCGTCATGACGCACGTGTTCTTCAGCACCATCGACTGGGACAAACTGAACCGGCGAGAGATCGAGCCTCCGTTTAAACCCCAAATCAAAACCGGTGAGGACGTGAACAATTTCGACCCCGACTTCACGAACGAAGACGCAATTCTCACTCCCATCGAGGAAGCTGTGATCCCGCAGATCAACCAGGACGAGTTCCAAGATTTCTCGTTCACCTCGGAGGAGATGCTGGAGTACTGCGTGTagtaaagaaaaggaaaaaaaaaacagtaaaagaaaaacaaagtgatGCCGCAGGAGGAAGACGACGACGTCGGTTGAGTTGGTTGAATCGTGACATCATACTAATGAATATTTATTGAACTGGCGAAAGCTAAGCTGTGTTGGGAGACATCATTGTGAACCGTGACTGTTTTGTCCAAAGTTAGCAAACGGTACGATTTTACCAAGAAGAACGTGGGACTCGTCAGAGGCGAGATGTGATGGAGATGTGATGGAGATGTGATGGAGATGTGATGGAGATGTGATGGCatcagattttatatatttttttctgcagcaAGTCAGAAGTTTTTCCTGGACACTTTTTTTAACAATCGTAGCTGATTTATTGCAGCAAGCCTAAAAAATGGATGCATTAACATCGTACACAAAGGACAATGACATCATATTCCTTAAACCGCGACATTTTattgaacaaaaacaaagtatTCAAACTCTTACCAAAGTTAGTGAAGACTATCGTGACTATCGCTTTCGTACTAAACTCTGgaggtgaatttttttaaatgaatgagagatgagaatatttttttaagtcattGCGTCAGTGGAAATGATTAGTATTACAAGCATTTTATTGTAGCTAAAGTTAGCTTTTATTGTATGAGAGAAAATATGATGGAAAGGATCAAATTCCAGTTATTTCTCAGCaccaaagcaaaaaaaa

Function

symbol description
prkch Enables enzyme binding activity. Involved in several processes, including positive regulation of B cell receptor signaling pathway; positive regulation of NF-kappaB transcription factor activity; and positive regulation of glial cell proliferation. Located in cytoplasm and plasma membrane. Implicated in cerebral infarction.

NR:

description
protein kinase C eta type isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K13419 pknK; serine/threonine-protein kinase PknK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301269.1 True 2233 mRNA 0.47 11 33329005 33336795

Neighbor

gene id symbol gene type direction distance location
hif1aa hif1a coding downstream 7342 33306312 ~ 33321663 (-)
LOC113542112 NA coding downstream 35662 33286801 ~ 33293343 (-)
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding downstream 224762 33095656 ~ 33104243 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding downstream 460650 32865245 ~ 32868355 (-)
mtres1 c3h6orf203 coding downstream 564661 32759671 ~ 32764344 (-)
dhrs7 dhrs7 coding upstream 20235 33357030 ~ 33361865 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding upstream 48319 33385114 ~ 33387819 (-)
six4a NA coding upstream 52698 33389493 ~ 33403724 (-)
tdrd9 tdrd9,LOC104966444 coding upstream 131228 33468023 ~ 33484082 (-)
kif15 kif15 coding upstream 148218 33485013 ~ 33505325 (-)
G57292 NA non-coding downstream 23487 33303570 ~ 33305518 (-)
G57290 NA non-coding downstream 30692 33296819 ~ 33298313 (-)
G57275 syt14 non-coding downstream 71213 33257229 ~ 33257792 (-)
G57267 NA non-coding downstream 93293 33234666 ~ 33235712 (-)
G57215 NA non-coding downstream 260320 33067534 ~ 33068685 (-)
G57300 NA non-coding upstream 26809 33363604 ~ 33364547 (-)
G57302 ppm1a,LOC106571506 non-coding upstream 28262 33365057 ~ 33410771 (-)
G57224 NA non-coding upstream 33065 33369860 ~ 33375501 (-)
G57232 NA non-coding upstream 33980 33370775 ~ 33406126 (-)
G57223 NA non-coding upstream 73753 33410548 ~ 33411453 (-)
G57210 NA other downstream 229433 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 600264 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 667393 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 939861 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 974505 32346755 ~ 32354500 (-)
slc38a6 slc38a6 other upstream 608 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 86869 33423664 ~ 33442815 (-)
G57322 NA other upstream 118427 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 143553 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 193132 33529927 ~ 33529997 (-)

Expression


Co-expression Network