LOC113545523 (cyp1b)


Basic Information

Item Value
gene id LOC113545523
gene name cyp1b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10731531 ~ 10735897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301338.1
ACCATACAACCAATTCACTCAGCTCTGGGCTGCATTATTGGAGCTACGAACTGCGCGTCTGAAGGGACTGAGCGTGCGCCGTGCCTAAATAAATCTACTGATGTCTGCAAaccCTAGAATGGAGTTGCCAGGGATTATAACGGACTTCCTCCAGCTGTCAAAGGAGAATATTCTGCTGCTTTGGCTTGCAGTCTTGGTCGCCGTGCACTTGATGACCAGTTTGGTGCGCCACTGGAGCGCGCGGACTTTACCGGGCCCGTTTCCGTGGCCGATCGTCGGTAATGCGGCGCAGATCGGCAGCTACCCGCACATCTACTTCACGCGCATGGCGCGGCACTACGGCGATGTGTTTCAGATCAGGCTTGGCAACCGGCCCGTGGTGGTGCTTAACGGCGACGCTATCCGACAGGCGCTCGTGCATAAGGGTGTGGATTTCGCCGGGAGACCCGATTTCGCCTCGTTCCGCTTCGTCTCGGGTGGTCGGAGCATGGCTTTCGGCAATTACAGCGAATGGTGGAAGGTGCACCGTCGGGTGGCGCAGGCCACCGTGCGCAAGTTCACTACGAGTAACCCGGACACCAAGAACGCGATCGAGAGCCACGTCGTGAGTGAAGTCAAAGAGCTGATCTCGCTGTTTATGCGCGAAACGCGCACGCATGGCTACTTTCAGCCCCACCACTACCTTGTGGTGTCCACGGCGAACATTATAAGCGCCTTGTGCTTCGGGAAACGCTATTCGCACGACGACGCCGAGTTTCAGCAGGTGGTGGGGCGTAACGACAAGTTCACGAAGACAGTGGGCGCCGGCAGCATCGTGGACGTTATGCCTTGGCTCCAGTTGTTTCCCAACCCCATCAAAACACTGTTCGATCAGTTCAAGGAACTCAACACAGAGTTCTACGAATTCATCCTGGCCAAGGTTGTGGAGCACCGGAAGACCATGGAGCCGAGCATCGTCCGGGACATGACGGACGCGCTCATCATGACGCTGGACCGCGGTATGACTGGGGCACCCGGGGTCTTACTGGATGAGAAGTATGTGCCCCCAACCATCGGGGACATCTTCGGCGCGAGCCAAGACACCACCTCCACCGCGCTGCAGTGGATTCTCCTGCTGCTCGTCAGGTATCCAGATATTCAGAACAGACTTCAGGAGGAAGTGGACAAAGTAGTGGGCAGGAACCGTCTACCTTCCCTCCAAGACCAACCACATCTCCCATATGTGATGGCCTTCATCTATGAGATGATGCGGTTCAGCAGTTTTATCCCAGTGACAATCCCCCACAGCACAACCACAGACACCTCCATTAATGGATACCCCATTCCCAAAGGCACTGTGGTTTTCATCAACCAGTGGTCCCTGAACCATGACCCCCAAAAGTGGGATCATCCTGAGATCTTCAACCCACTGCGCTTCCTGGATGAGGATGGGGAACTAAATAAAGATGTGACTGGCAATGTCCTGATCTTCTCCATGGGAAAGAGGCGATGTATTGGAGAGGAACTGTCCAAAATGCAGCTCTTCCTCTTCACAACACTCTTGACACATCAGTGTCACTTTGAAGTGGAGAAACAACCCACTTTCGACTGCATATATGGGCTAACGCTGAAGCCCAACCCATTCCACGTAGCAGTAACCCTGCGTGACTGACTGCACTGGGTGGAGAAAGTGGGCTGACCACATCTTCATGAGCTGGATGTGAATGAAGAGTGTGAATGAACTCTGAACAGTGGCTCAGCTGAAAACTCACGACCAGTATCcaacaaaaatggttaaaaactctacagattaaattaacattttaaccaGTGGTGTAggtttaatttcagtttttgcGGGAACACACTGCTAATAGCACCTAACCCTTTGTTTGAAGATGTCTAACTGTGTAACAGGGTTCAAAATCTCCATTAGGGGTGATCAACCCATCCAGCAAGACATTGAAGAGGCCACTCCCATCATAATATagctatacacacactaacaggtCAGTTTTTAAACATCCTATATTAAAATTTTGGTTAAAATGCAAGAAATGCGTTCAAAGTTAAatacactgaattaaaaaaaatatatacactcactatccactttattgggcaaaaaaaaggaagtgtaataaaaaaaaaaaaagtgattttttttccccctcatcttccactgtccagtttgggtgagcctgtacCTATGATAGTCTCAGAGGCCTGTTCTTggcagacaggagtggaacccaatgtggtcttctgctgttgtagcccatccacctcaaggtgcAATGTTtagtgcatgctgagatgcttttctgctcactgtagtagtaaagagtgattacatgagttactgtatccttcctggcagcacAACCCAATCTGGTCATgctcttctgatctctctcatcagcaagttgtttcagcctgcagaccctccactccaagaattaaaaaaaaacaccattctgtgtaaaccccagagactgttgtg

Function

NR:

description
cytochrome P4501B

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07410 CYP1B1; cytochrome P450 family 1 subfamily B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301338.1 True 2482 mRNA 0.50 3 10731531 10735897

Neighbor

gene id symbol gene type direction distance location
cdc42ep3 cdc42ep3 coding downstream 72290 10650453 ~ 10659241 (-)
opn3 opn3,LOC107676370 coding downstream 115908 10607859 ~ 10615623 (-)
pbld LOC108261389,LOC108263388 coding downstream 138291 10587876 ~ 10593240 (-)
LOC113541130 NA coding downstream 162703 10567357 ~ 10568828 (-)
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding downstream 168943 10557601 ~ 10562588 (-)
polr1b polr1b coding upstream 49844 10785741 ~ 10797095 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 109134 10845031 ~ 10849713 (-)
dennd10 fam45a,LOC106576813,LOC106604714,LOC107711433 coding upstream 120241 10856138 ~ 10862110 (-)
march5 march5,LOC107719203 coding upstream 158454 10894351 ~ 10927228 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276 coding upstream 246697 10982594 ~ 11010366 (-)
G44105 NA non-coding downstream 7863 10673346 ~ 10723668 (-)
G44103 NA non-coding downstream 75687 10653714 ~ 10655844 (-)
G43987 NA non-coding downstream 415083 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 426449 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 465943 10265356 ~ 10265588 (-)
G44173 NA non-coding upstream 80775 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 186412 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 217608 10953505 ~ 10956492 (-)
G44274 NA non-coding upstream 238922 10974819 ~ 10978423 (-)
G44275 NA non-coding upstream 242749 10978646 ~ 10980295 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 570008 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 722970 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1502647 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1877737 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1947733 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 972717 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1275034 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1408943 12144840 ~ 12152522 (-)
nin nin other upstream 1699212 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1788739 12524636 ~ 12534215 (-)

Expression


Co-expression Network