LOC113541130


Basic Information

Item Value
gene id LOC113541130
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10567357 ~ 10568828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301541.1
ATGGAGGCTACAGAGCAAGCACTAATATGTCCCATCTGTGAGGATGTCTTTACAGTACCCATACGTCTACCCTGTGGGCACAACTTCTGTCAGGCCTGCATTCATATTGTTTGGAACTTGGATGATGAAGACTCAGAGGCAGTGCCACGATTCTGTCCTGAATGCCAGATCTTCCTTCCACCTGACCTGAAACTTGAAATCAACACAGATCTAGAGCAAAAGCACAGGGAGCGGCTGAGAGGACACACACTTATAGAACTGACCGAAGATCTGCTTTCCTATAAGTGTCAGGAGCATGGCGAGGAGAAGAAGCTGTTTTGCCAGGATGACCAGGCTGCtgtgtgctctctctgtgtggtgTTTGGGACACATAAGAGTCACCGGATCATCCAGCTGCAAGAAGCCTGCTTGAATTTCAAAAAAGCACTGGAGGAAAGAGATGCAGAGCTGCTGCAGAACAGACACTTGGCTGAGTGTGCTTTACAGGACCTGCAGCAACTGGTTTCAGAGGCATCTgcTTCTGCTAAAGCCTACAGAGTCAGAATAGCAGAAATATACAGCCAAATGAAAGCCTTGATTGTAAAGGATCAACAGCTGATGATGGATATTATAGAAATGGAAGAACTTTACACCAACAAGTGGTTGGCATCCAAGATAGAGTGTTTGGAGCAGCAAATAAAAGACATGAATTCTTCATTAAGTGAGAGCAAATCTGTTCTCCAAGAAAATGATCAGCTAAAACTCCTCGAGGTACCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301541.1 True 759 mRNA 0.45 4 10567357 10568828

Neighbor

gene id symbol gene type direction distance location
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding downstream 4769 10557601 ~ 10562588 (-)
chchd1 chchd1 coding downstream 50400 10513951 ~ 10516957 (-)
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding downstream 55510 10492837 ~ 10511847 (-)
zswim8 zswim8,LOC107713895,LOC107743573 coding downstream 78550 10449319 ~ 10488807 (-)
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding downstream 119630 10331733 ~ 10447727 (-)
pbld LOC108261389,LOC108263388 coding upstream 19048 10587876 ~ 10593240 (-)
opn3 opn3,LOC107676370 coding upstream 39031 10607859 ~ 10615623 (-)
cdc42ep3 cdc42ep3 coding upstream 81625 10650453 ~ 10659241 (-)
LOC113545523 cyp1b coding upstream 162703 10731531 ~ 10735897 (-)
polr1b polr1b coding upstream 216913 10785741 ~ 10797095 (-)
G43987 NA non-coding downstream 250909 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 262275 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 301769 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 313419 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 324475 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 84886 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 104518 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 247844 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 353481 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 384677 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 405834 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 558796 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1338473 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1713563 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1783559 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1139786 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1442103 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1576012 12144840 ~ 12152522 (-)
nin nin other upstream 1866281 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1955808 12524636 ~ 12534215 (-)

Expression


Co-expression Network