calhm1 (LOC108263121,LOC108263394)


Basic Information

Item Value
gene id calhm1
gene name LOC108263121,LOC108263394
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13329914 ~ 13333161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301642.1
GTTTGGGACGAAGCCCAGGTGTGCGCTCCTGCGTGCGCAAAGGCGACTCTTCACTTCTGCGCGTAAAGACAATCAGCTCACCTGTTCTGTTTCCAAGTGAAATTTTCTCAACATGGATAAGTTTCGGATGATGTTCCAGTTCTTACAAGCTAACCAGGAGTCTTTTATGAACGGTATATGTGGGATCATGGCCCTGGCGAGCGCACAGCTTTACTCCACCTTTGAGTTCACCTGTCCGTGTCTGCCGGAGTATAATTACGCGTACGGGATCGGCATCCTGATCGTTCCTCCATTATGGTTCTTCATGCTGGGCTACGTGCTGAATAATAACATCTCGGTGCTGACTGAGGAGTGGAAGAGACCCACAGGTCAGCGGCAGAAGGAGCCCTCAGTGCTGCGCTACATGCTGTGCTCCATGACCCAGCGCGCGCTCATCGCTCCCTCCGTGTGGATCGCCGTCACGCTCATGGACGGCAAGAGCTTCCTATGCGCCTACAGCGCCAAGATCGACCTGAGCCACTTCCTCAACCGGAGCCACGTGCTGATGCCTGATAAAGACATGGAGAGGCTGCTGGCGACAATTCCCTGCAAGAATATCTTCGAGGCGCATGATGTCATCAACAGGGAGGCAGCATCCAGGTATATTCGGGTTATGTCGCAGgccTGTGGATGGGCATTTTTGATGCTGACAACTTTTGTGGCCTTTCTGATAAGAGCAATCAGACCTTGTTTCACTCAAGCCATCTTCCTGAAAACCAAATACTGGTCCCATTACATCGATACAGAACGTAGGCTCTTCGACGAGACGTGCAAAGAACATGCCAAAAGTTTTGCCAAGGTCTGCATTCAACAATATTTTGAGAGCATCAGTGGTGAAATGGTGTTTCACAAACTGCAAGTGAAGGAAAAGGATGGAAAAGAGAAAGCCAATGATGAAGAAAAGCCCATCAGTGAAGAAGAGAAGCTCCTAGGCATCCGTGAAAGGGAGGACATGAACAGAGTTCTGTGGAACTGGCATACCTGTAAACCTGCACTTAGCATTCATAAATATGGAAAAGATGAAAACACTAATGACAATTCAAATACTTCTGTACACACTAATGGTTATCACAGGCCGAAGTCCATGAATGAATGTGCGGCGTATTATTCCAAGGTCTGA

Function

NR:

description
PREDICTED: calcium homeostasis modulator protein 1-like isoform X1

GO: NA

KEGG:

id description
K19738 CALHM1; calcium homeostasis modulator protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301642.1 True 1159 mRNA 0.49 3 13329914 13333161

Neighbor

gene id symbol gene type direction distance location
calhm3 calhm3,LOC108263123,LOC107578949,LOC102205420,LOC102305682 coding upstream 421 13325893 ~ 13329493 (+)
LOC113543512 gsto1,LOC100304822 coding upstream 12289 13314595 ~ 13317625 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325 coding upstream 19645 13295232 ~ 13310269 (+)
ap3m1 LOC108263184,LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC107666495 coding upstream 92935 13229662 ~ 13236979 (+)
dusp13a dusp13a,LOC108263393,LOC107666542,LOC107743611,LOC107601810,LOC107552920,LOC107671562 coding upstream 274539 13040207 ~ 13055375 (+)
LOC113543782 LOC108263125 coding downstream 180 13333341 ~ 13338334 (+)
si:dkey-51a16.9 LOC108263124,LOC108426796,LOC107559326,LOC107655434 coding downstream 6097 13339258 ~ 13346106 (+)
atoh7 atoh7 coding downstream 20408 13353569 ~ 13356432 (+)
pkd2l1 LOC108263119 coding downstream 25915 13359076 ~ 13366067 (+)
bag3 bag3 coding downstream 43563 13376724 ~ 13383343 (+)
G45594 NA non-coding upstream 16693 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 17834 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 234033 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 277385 13052240 ~ 13052529 (+)
G45459 NA non-coding upstream 312314 13011946 ~ 13017600 (+)
G45640 NA non-coding downstream 42638 13375799 ~ 13375999 (+)
G45712 NA non-coding downstream 188678 13521839 ~ 13599015 (+)
G45713 NA non-coding downstream 189745 13522906 ~ 13594825 (+)
LOC113545747 NA non-coding downstream 310959 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 556118 13889279 ~ 13889849 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 295564 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 324591 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 392612 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 686610 12639317 ~ 12643304 (+)
trnay-gua NA other upstream 693508 12636320 ~ 12636406 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other downstream 164887 13498048 ~ 13501050 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 880208 14213369 ~ 14286542 (+)
cgas NA other downstream 1028206 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1639407 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2460245 15793406 ~ 15797204 (+)

Expression


Co-expression Network