ppm1ba (ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482)



Basic Information


Item Value
gene id ppm1ba
gene name ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20986889 ~ 20996378 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034301821.1
ATGACAGCAACTGAGAGTCATGGGGCGAACTTCCTAGACAAGCCCAAGACGGAGAAGCACAATGCGCACGGTGAGGGCAATGGTCTGCACTACGGCCTGAGCAGCATGCAAGGATGGCGTGTGGAAATGGAAGATGCACATACAGCCACTGTGGGTTTACCACATGGCCTTGACGACTGGTCCTTTTTTGCTGTATATGATGGGCATGCAGGCTCACGTGTGGCCAACTACTGCTCCAAGCATCTGCTAGAGCACATTGTGGCGGCGGCGCCAGCCGGCGAGCTAGGCCGCAGTGTGGAGGCGGTGAAGAGCGGCGTGCGTGCTGGCTTCCTGCGCATCGACGAGCACATGCGTGGCTTCGCAGACCCGCGCAATGGCCTTGACCGCAGCGGCTCCACAGCGGTAGCTGTACTGCTTTCACCTGAGCATATGTACTTCATCAATTGCGGTGACTCACGCGCACTGCTTTGTCGCGATGCGCGTGTTCGCTTCTCCACACTCGACCATAAGCCATGTGACCCACGTGAGAAGGAGCGCATCCAGAACGCCGGTGGCTCTGTCATGATCCAGCGTGTGAATGGCTCTCTGGCCGTGTCTCGTGCTCTGGGAGATTATGACTACAAGTGCGTGGAGGGCAAGGGCCCCACCGAGCAGCTGGTTTCCCCTGAGCCTGAGGTGTTTGAAATTCCCCGTGTGCCAGAGGAGGACGAGTTTGTGGTGCTGGCCTGTGATGGTATATGGGACGTGATGAGTAATGAGGAGCTGTGTGCCTTTGTGCGTGCCAGGCTGGAGGTGTCTGATGACTTGGAAAAAGTGTGCAATGAGGTGGTGGACACGTGCCTGCACAAGGGAAGTCGAGATAATATGagtgttgtgttagtgtgtttgccAAATGCACCCAAAGTATCAGAAGAGGCAGTGAAGAGAGATGCTGAGTTGGATAAGTTCCTTGAATCTCGTGTGGAAGAACTCATTGAGAAAGCAGGGGAAGAGGGAATTCCTGATCTGGTACATATCATGAGAAACCTTGCCACAGAGAATATCCCCAACCTCCCACCAGGGGGAGGCCTCGCCAGCAAGCACAGTGTTATTGAGGCTGTGTATAACCGGCTTAACCCCCAAAGAGAAGACGATGGGAATGGTGCAGACCTGGAGGACCCCTGGTAGCTGCCCACCCCGAGGGCTTATGGCCTTAAAGGATCCCTCTGTTCACGAGACACCCTTCATACTTTTGTTCCacttttttataaaatttacaGATTGATTTGGGTCATCAGTAATAATTTGAAGTACAGGGGCAAACAGTCTGCCCAAAAGgattacaaactttttttttttttttt

Function


symbol description
ppm1b Enables protein serine/threonine phosphatase activity. Involved in several processes, including negative regulation of interferon-beta production; negative regulation of intracellular signal transduction; and peptidyl-threonine dephosphorylation. Located in cytosol and nucleolus.

NR:

description
protein phosphatase 1B isoform X4

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034301821.1 True 1343 mRNA 0.53 6 20986889 20996378

Neighbor


gene id symbol gene type direction distance location
abcg8 abcg8,LOC107666472 coding upstream 101177 20877886 ~ 20885712 (+)
cep170aa cep170 coding upstream 131187 20802370 ~ 20855702 (+)
akt3a akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding upstream 241562 20648884 ~ 20745327 (+)
adss2 adss,LOC107666526,LOC101478205,LOC102202649,LOC100691320 coding upstream 384841 20573244 ~ 20602048 (+)
dctn1b dctn1,LOC108263710 coding upstream 434295 20522100 ~ 20552594 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding downstream 5991 21002369 ~ 21010590 (+)
trnae-cuc_10 NA coding downstream 9072 21005450 ~ 21005519 (+)
six3a six3,LOC107733790,LOC107585256 coding downstream 184557 21180935 ~ 21183818 (+)
socs5b LOC108263298,LOC108422458,LOC107727375 coding downstream 484321 21480699 ~ 21501499 (+)
prop1 LOC108263276 coding downstream 521408 21517786 ~ 21522535 (+)
G50140 NA non-coding upstream 35898 20950570 ~ 20950991 (+)
G49857 NA non-coding upstream 270592 20619938 ~ 20716297 (+)
G49864 NA non-coding upstream 397659 20585604 ~ 20589230 (+)
G49863 NA non-coding upstream 401389 20580801 ~ 20585500 (+)
G49853 NA non-coding upstream 462840 20523816 ~ 20524049 (+)
G50284 NA non-coding downstream 183228 21179606 ~ 21179811 (+)
G50297 NA non-coding downstream 201899 21198277 ~ 21198508 (+)
G50310 six2,six2a,LOC107666385,LOC107602488,LOC107602487 non-coding downstream 210016 21206394 ~ 21210115 (+)
G50311 NA non-coding downstream 214459 21210837 ~ 21213946 (+)
G50384 NA non-coding downstream 316826 21313204 ~ 21350033 (+)
G49862 NA other upstream 411410 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 594288 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 1630791 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 1724801 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 1769613 19214207 ~ 19217276 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 29355 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 1023944 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 1488932 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 1787950 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 1914766 22911144 ~ 22913552 (+)

Expression



Co-expression Network