ints12 (ints12)


Basic Information

Item Value
gene id ints12
gene name ints12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1065387 ~ 1069815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301860.1
AAACGAAGAGCCAATCACAGGCGAGCAGAGTGTGAGTATGGGtgggaaacaaacaaaaacgcCTCGttgagaggaagagaaagagacaacaAGCTGATGTTTTATCTGAGTCATGGCTGGAACTGTGAGTTTGGAGCTGGACCCTGTTTTCCTGAAGGGTTTGGGGTACCTCCACTCCAAGAGCAAAGACTCCGCCGAGAAGCTGAAGGCTCTGCTGGACGAGTCTCTGTCCAGAGGAAGTGATTCAGCGTATCGTACCTCTCTGAAGGAAGCCGCCGAGCTTTCCAAAGCGTCGGTACCCAAACTGATCAAACAGGACTCCAAATCAACGTCCGgctcatcttcatcatcatcgtcgtcatcttcgtcatcgtcgtcatcttcttcatcatcatcatcgtccaGCGGTAAATCCAGCAGCTCGGAGAAAAGCAAGAAGGAAGTTGAGAAAAGACCTGCTGAGAAGGTGAGGTCGGAGTGCGGAGATGCAGGTGATCCGCCCAAAAAGCCGCGTCTGGATAAAGCGGAAAATCGTTCGTCCCCCATCGCCTTCCAGACTAAAGACATTCCCATGGGAGACTTCAGCTACAGCGACGAGACCAACGCTGATGACTTCGCCATGGAGATGGGATTAGTGTGTGTCGTGTGCAGACAGATGACGGTGACTTCAGGGAATCAGCTGGTGGAGTGTCAGGAGTGTCACAACCTGTACCATCAGGAGTGCCACAAACCCCAGGTGACGGATAAAGACGTGAACGACCCGAGGTTGGTGTGGTACTGCGCACGCTGCACGCGCCAGATGAAGCGCATGGCTCAGAAGACGCAGAAGCCTCCTCAGAAGGCGAGTCCGACCGTAACGTCAGTCACGCCGGTGGTTAAAGACCCGCTGGTGAAGAAGGCGGAGCTGAAACCCAAACCAGACACGACCGGATCTTTTCAGGCCTTTAAGAGGACAGAGGTCAAGgCGTCCTCTGCGGCGCTGGTGAACTCGGCGAGCAGCGCGTCGTCTCTCCCCTCGGGCAGCGCTCTCACTGGCTGGGCCGCCTTCACCAAAACCTCCGCTTCAGCGTCATCCGGACCCAAACCCGGCCTCGCTAAGCCCCTCCCCTCCTCCACCAGTTCAAAGCCCATTGGTCTGTTTGCGTTGGGCACCAAAGCACAGACAGGAAGCGGAAACGGGAACAACGGCGGTAACGGGAACACGGCGGCCCAGCTGAAGCCGCCGCCCCCTCTCACGCTGGGGAAACCCGCTCTGAGCCGTTCCGGCAGCGGGGAGAACCCGGGAAAGTCCGGCTCGTCCTCACCCGGGGCGAGCGGCTCCAGCGGCGCCGGGGGCAACGGGGCAGCGGGCGGATCCAACGGGGGGGGCAACGGGGGCAACAGCAGCGGCGCGAGCggcagcaacagcaacaacgcCAACAGTCAGAAAGCATCAGCTGACGGCAAAGCACCGACATCACAGGAGTCTCAGCTCAACGCCATGAAGCGCCTGCAGATGGTGAAGAAGAAAGCAGCGCAGAGGAAGctgaagaaataaacacacagcaccCAGAGAGAGGCAGGGGGAGAGaggcaggggagaga

Function

symbol description
ints12 Predicted to enable metal ion binding activity. Predicted to be involved in snRNA 3'-end processing. Predicted to act upstream of or within snRNA processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS12 (integrator complex subunit 12).

NR:

description
PREDICTED: integrator complex subunit 12

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13149 INTS12; integrator complex subunit 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301860.1 True 1584 mRNA 0.58 7 1065387 1069815

Neighbor

gene id symbol gene type direction distance location
ppa2 ppa2,LOC108414713 coding downstream 127938 925951 ~ 937449 (-)
cxxc4 cxxc4 coding downstream 194034 838511 ~ 871353 (-)
cdkn2a/b LOC108263810 coding downstream 309580 746338 ~ 755807 (-)
anp32b anp32b coding upstream 76314 1146129 ~ 1153350 (-)
snapc3 snapc3 coding upstream 740335 1810150 ~ 1820845 (-)
si:ch211-113e8.11 LOC108263804 coding upstream 823771 1893586 ~ 1895099 (-)
ccdc149b ccdc149b,LOC108263252,LOC107550975,LOC105908379 coding upstream 877560 1947375 ~ 1964907 (-)
aip aip,LOC106609959 coding upstream 931634 2001449 ~ 2007253 (-)
G39348 NA non-coding downstream 18634 1046243 ~ 1046753 (-)
G39323 NA non-coding downstream 72132 992958 ~ 993255 (-)
G39313 NA non-coding downstream 111280 953899 ~ 954107 (-)
G39312 tet2,LOC108414712 non-coding downstream 139861 921127 ~ 925526 (-)
G39306 NA non-coding downstream 157553 903998 ~ 907834 (-)
G39346 NA non-coding upstream 14624 1084439 ~ 1085453 (-)
G39359 NA non-coding upstream 81331 1151146 ~ 1194477 (-)
G39356 NA non-coding upstream 92835 1162650 ~ 1165350 (-)
G39390 trmo non-coding upstream 101088 1170903 ~ 1171514 (-)
G39412 NA non-coding upstream 147472 1217287 ~ 1634965 (-)
LOC113524614 NA other downstream 58337 1004477 ~ 1007050 (-)
G38400 NA other downstream 749859 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 797572 221729 ~ 267815 (-)
cntln cntln,LOC108263774 other upstream 200630 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 802118 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 899948 1969763 ~ 1979549 (-)
G39720 NA other upstream 1103543 2173358 ~ 2173751 (-)
tenm3 tenm3,LOC108434131 other upstream 1150332 2220147 ~ 2984203 (-)

Expression


Co-expression Network