tdrd9 (tdrd9,LOC104966444)


Basic Information

Item Value
gene id tdrd9
gene name tdrd9,LOC104966444
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33468023 ~ 33484082 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302071.1
TTGGTGACGTCACGGCGAGCGCGAGGAGCCGGAGTGAGGCAGAGAGAGCGGCGTTGCtagcctgtttgtttgtttgtttgtttgtttgtttggaggCAGAATAAAGGGAGTTTATTCGGTTCTGTGGACCTGAGCCCGTGTAGCTGTGTGCTGCAGGTGTGTCGCTATGAAGCAGGCGGTGACGGCGGAGCAGATCGCGCAGTGGTTCACTCTGGGAGCGCAGTTCGCTAATGTCCGAATCACTGAGGAGCCcaaaaatacagataaaacaCACCCGCACGGAGAGGAGCATGAGGACCAGAGTCCCGGTTACAGAAGCCCGGAGAAGGACGGATCGGACGGAGGAGTCGCGAGAAAGAGGAAGTCCGACCTCCTCGCCGGCGCCGGGGTCGCTCCTGTTCCTCTCGCCAGCTTTGAGTATCCAGCACTCcccatcaccaagaacaggcaggagctgatcTCGCTGATCGAGAGTAACTCTGTGGTGATAATCCGAGGAGCGACGGGAAGCGGGAAGACCACGCAGCTCCCCCAGTTCATTCTGGATTACTACACGGAGAAGAGCGCCCCCTGCAGCGTGGTGGTCACGCAGCCGCGCAAGATCGGAGCCAGCAGCATCGCACGCTGGGTCGCCCAACAGCGCAGGTGTACGCTCGGCAGCCTGGTGGGgtatcaggtggggtTGGAGAAGATGGCCACAGAACACACTCGGCTGATCTACATGACCACAGGAGTGCTGCTGCGGAAACTGGTGGCAGCCAAGAGCCTCATCGAGTTCACACACATCTTTATAGAcgaggtgcaTGAGCGGACGGAGGAGCTGGACTTCCTCCTGCTGATGGTCAGGAAACTGCTGCACTCCAACTCACGCTTTGTTAAGGTGATCCTGATGTCAGCTACAATTAACTGTGCGGAGTTTGCGGAATACTTCGGTACTCCGATCAGGAACCGGATAAACCCGGCGTACGTGTTTGAGGTGGAGGGAGCGCCGTACACGGTCGAGGAGTTTTACCTGGATGACCTCAAAACCATCCTGCCCttcagagtggacGTGCCCCTCCCTGATGACCCGTACATTACAGTGGAGATGTATAATGTTGCAGTGAGCCTCATCCAGAGCTTTGATGAGATGGAGACTAAAGAACAAAGtcgTTTGGAGCAGGATGGCGGTACGTCTCTCCCGGAGAGAGGCAGTGTTTTGGTGTTCCTGCCCGGACTCGCTGAGATTCAGTACATGCAGGAAGCTCTCGCTAAACTCGTCCGCAAAAGgTTGCAGGTGTACCCTCTCCACTCCACTGTGACGCTGGAGGAGCAGAACGGGGTGTTTTTAGTACCTGCACCTGGGTATAGGAAGATCATCCTTTCCACCAACATTGCAGAGAGTTCAGTCACAGTGCCTGATGTCAAATAtgtGATCGACTTCTGCTTGGTGCGTCACCTGGTATGTGACAAAGAGACGAACTACCAGTCTCTCCGTCTCACCTGGGCATCCAAGACCAACTGTAACCAGCGGCGAGgtcgaGCGGGTCGCGTGTCTAAAGGATTTTGTTATCGCTTGGTCACTAGATCTTTCTGGAACAGTGAGATTCCAGAGTACACCATTCCCGAGATGCTGCGTTCTCCTTTAGCCAATACCCTGTTAAACGTGAAGTTGTTGGATATGGGCGATCCGCGCTCTCTGCTCTCCACGGCGCTCACACCCCCAAACCTGGACGACATCGAGAGAACCATCCTGCAGCTCAAAGAGaTGGGCGCTCTCTCGGTGTGTAGCAGCAGTAGGAAGCGGTTTGATGGCGATTTAACGTTTCTGGGTCGGGTTCTCGCTCACCTCCCCGTGGATCTGCACTTCGGGAAGCTCATCGTCCTCGGACACGTCTTCGGCTGCCTGGAGGAGTGTATCATCACCGctgccGCTCTCTCTCTGAAGAGTTTTTTTGCAATGCCGTCCCTGCAGCAGCTTCCAGGTTACCGGAGTAAGCTGTCATTCGCTCAGGGAGTGCCCAGCGACCCCATTGCCTTTGTTCATGCCTTCAAGGCCTGGTACACCTCCAGAGCCAAAGGAGAGTTTAGACGCCcaaaggatgaGCTGGAGTGGGGCAAAGAGAACTGCATTCAGATCAAACGGATACGAGAGgtgGCTGAGTTGTTTGAGGATCTGAAGAATCGAGTGTCGCAGTTCAACATGCACATCAGAGAAACTTCCTCTCCCTCAGACTAcaccagcaaacacacacagaaattcatactgcagGTGGCGATCGCAGGCGCGTTTTATCCGAACTACTTCCTCCAGGGAACTGTGGACGAGGAGCTCGCCTCCAAGGAACTCTCCGGAAATGACCCCAGGACCACTGTACTGgtGCGTAATCTCCCTCCATTTGCATTCCTCTACTATAAACAGCTCCAGTCTCTCTTCAGACAGTGTGGTCAGGTCAAATCCATCTCCTTTGACTACTCCAGggccTATGTAGAGTTCTACCGCTCGTCACTGAGAGGTTCAGGCGTTCTCCCAGaggtctctctgtctctcctcctcgcTCAGCAAAGACTTCCTCTCTATCTCCACGTTTATCCTGCTGAAGAGGTGGAGACTCGGGCAGGGGGGCAGAGTGTCTCACATCTCAGATACgcacgggTGAATGTGGATTTTCAGAATCAGTGTGTGAGCCCTGTCGGAGTTCTGAGCAGCTCCATCGAGCCGGAGAAACTTCCGTCTAACCGTGTCTTCATCGTCAATATCACCGAGgtcatCGAAGTGGGGCATTTTTGGGGTTTCCAGGCTGACGAGGCGAGTCTGGAGAAACAGAGGAGGCTGACGGCGGCCATTAATGCGCGGGAGCTCCGCCCACTTCCTGTGTCACTTTATCCAAACCTTCTGTGTCTCGCCCctttctctgacacacacaccgaacCGGGCAACTACTACAGAGCCAAAATACTGCACGTCATGGGGAGTAATGtggaggtgtTCTTTGTGGACTTCGGAAACACTTCCAAGGTGCCGTGTAACTCTCTGAGGGAACTTCCTGCTGATCTGCAAGCTCTGCCCTTTCAGgctcAGGAGTTCAGCGTGGCGTGTTTGGCTCCATCGGCACAGTCGGTGATTCTGGGCAACCACTGGAGCAGTCGAGCTCGGAACCGCTTCATCACGCTCGTGCACGGCCGCTCGCTCATCGTCACGCTCTACTCCATCCTGTACGGCGTTATGCGCGTCCATCTCCACGTCTCCATGGAAACGGGGGACGTCAGCGCGGCAGACTTGCTCGTGCAAGAAGGCCACGCTCGACCCGCACCCGAGAGCTTCGAAAGCAAGcaGTCCCATGAGGTTCTGATGGCTCTGTATCAGGACCTGAAGGAGGGAACGTTCACTCCAAGCTCCACCAGTAGCTCCTGGAAAAACCGTAAAGAGGAAGAGAAGCGGCTCATCGACAGTCTGCTGCTGTCCTTCTCTAAATCCAGCCACAGCGCCCCCAAGTGCAAGGTTCCAGTTCACGGCCCTTCCTCTCCTCACAAGGTCACATTCCACAGCATGAACGGCGCCCCACActtcagGTCAGTTGCTATTGACAGAAACAGCATTAACTCTGTGCTGGTGAACGATCATCCACACGACCATCACGACAGGATGCTGGTGGCcgggtctgtctctctcagtgcctcaggtgtgagTATTTTGCTAAAAGAGACGACCCTGATGCCTCAGATCCATGGCCTTCCTGCCATCATCACCATGCTCTTCACCCCCATCATGGAGCTACGCACTGATGAGGAGCGGACCTGCTTCACTGGAGCTCTGTGTGGTTTGGGCTCCAACTCCGACTCCCATGAGGCCGTTCTGCCGGAGCACGACATTGAGATGGCCTTCGATGTGAAGTTTGATGTTGATGACATTGCAGAGatAAACGCACTGAGAGAAGCGATGAACCGGTTGGTGTGTGAGGGTCCGAACGGTCTCCTCCATCTCGGCCCGGAGAGAATCAGCTCGCTGCAGGACGATGCTCGAGATCGACTCCTCAGgctgtTCTGTAAAGCTCCCCCCAGAGAGGACCGCACACCTGTTTACTACGACAAACCCAAAAAATGGAACCAGgtcgACCCCTCCCAGCAGATGGAGGTTGTGCAGAAGGGTGACAGCAGAATTAAAGGTGTTTTGTTTCAGCTGCACCCTATAACTCTGCTGAACATGTGAGAGTtttgtgttataataatgtttgtttCCTGATTTTACTGCAGAATAACTGACTAGCAGTGACtagatttatataattttctCTGATTATGTTGGACTGCAGTTGTTGCTCCTGTCCACTAGGTGGCACTAGTGTTTATGTTGGTCAATAAATAATGGAGTTTGTTACGCA
>XM_034302075.1
TTGGTGACGTCACGGCGAGCGCGAGGAGCCGGAGTGAGGCAGAGAGAGCGGCGTTGCtagcctgtttgtttgtttgtttgtttgtttgtttggaggCAGAATAAAGGGAGTTTATTCGGTTCTGTGGACCTGAGCCCGTGTAGCTGTGTGCTGCAGGTGTGTCGCTATGAAGCAGGCGGTGACGGCGGAGCAGATCGCGCAGTGGTTCACTCTGGGAGCGCAGTTCGCTAATGTCCGAATCACTGAGGAGCCcaaaaatacagataaaacaCACCCGCACGGAGAGGAGCATGAGGACCAGAGTCCCGGTTACAGAAGCCCGGAGAAGGACGGATCGGACGGAGGAGTCGCGAGAAAGAGGAAGTCCGACCTCCTCGCCGGCGCCGGGGTCGCTCCTGTTCCTCTCGCCAGCTTTGAGTATCCAGCACTCcccatcaccaagaacaggcaggagctgatcTCGCTGATCGAGAGTAACTCTGTGGTGATAATCCGAGGAGCGACGGGAAGCGGGAAGACCACGCAGCTCCCCCAGTTCATTCTGGATTACTACACGGAGAAGAGCGCCCCCTGCAGCGTGGTGGTCACGCAGCCGCGCAAGATCGGAGCCAGCAGCATCGCACGCTGGGTCGCCCAACAGCGCAGGTGTACGCTCGGCAGCCTGGTGGGgtatcaggtggggtTGGAGAAGATGGCCACAGAACACACTCGGCTGATCTACATGACCACAGGAGTGCTGCTGCGGAAACTGGTGGCAGCCAAGAGCCTCATCGAGTTCACACACATCTTTATAGAcgaggtgcaTGAGCGGACGGAGGAGCTGGACTTCCTCCTGCTGATGGTCAGGAAACTGCTGCACTCCAACTCACGCTTTGTTAAGGTGATCCTGATGTCAGCTACAATTAACTGTGCGGAGTTTGCGGAATACTTCGGTACTCCGATCAGGAACCGGATAAACCCGGCGTACGTGTTTGAGGTGGAGGGAGCGCCGTACACGGTCGAGGAGTTTTACCTGGATGACCTCAAAACCATCCTGCCCttcagagtggacGTGCCCCTCCCTGATGACCCGTACATTACAGTGGAGATGTATAATGTTGCAGTGAGCCTCATCCAGAGCTTTGATGAGATGGAGACTAAAGAACAAAGtcgTTTGGAGCAGGATGGCGGTACGTCTCTCCCGGAGAGAGGCAGTGTTTTGGTGTTCCTGCCCGGACTCGCTGAGATTCAGTACATGCAGGAAGCTCTCGCTAAACTCGTCCGCAAAAGgTTGCAGGTGTACCCTCTCCACTCCACTGTGACGCTGGAGGAGCAGAACGGGGTGTTTTTAGTACCTGCACCTGGGTATAGGAAGATCATCCTTTCCACCAACATTGCAGAGAGTTCAGTCACAGTGCCTGATGTCAAATAtgtGATCGACTTCTGCTTGGTGCGTCACCTGGTATGTGACAAAGAGACGAACTACCAGTCTCTCCGTCTCACCTGGGCATCCAAGACCAACTGTAACCAGCGGCGAGgtcgaGCGGGTCGCGTGTCTAAAGGATTTTGTTATCGCTTGGTCACTAGATCTTTCTGGAACAGTGAGATTCCAGAGTACACCATTCCCGAGATGCTGCGTTCTCCTTTAGCCAATACCCTGTTAAACGTGAAGTTGTTGGATATGGGCGATCCGCGCTCTCTGCTCTCCACGGCGCTCACACCCCCAAACCTGGACGACATCGAGAGAACCATCCTGCAGCTCAAAGAGaTGGGCGCTCTCTCGGTGTGTAGCAGCAGTAGGAAGCGGTTTGATGGCGATTTAACGTTTCTGGGTCGGGTTCTCGCTCACCTCCCCGTGGATCTGCACTTCGGGAAGCTCATCGTCCTCGGACACGTCTTCGGCTGCCTGGAGGAGTGTATCATCACCGctgccGCTCTCTCTCTGAAGAGTTTTTTTGCAATGCCGTCCCTGCAGCAGCTTCCAGGTTACCGGAGTAAGCTGTCATTCGCTCAGGGAGTGCCCAGCGACCCCATTGCCTTTGTTCATGCCTTCAAGGCCTGGTACACCTCCAGAGCCAAAGGAGAGTTTAGACGCCcaaaggatgaGCTGGAGTGGGGCAAAGAGAACTGCATTCAGATCAAACGGATACGAGAGgtgGCTGAGTTGTTTGAGGATCTGAAGAATCGAGTGTCGCAGTTCAACATGCACATCAGAGAAACTTCCTCTCCCTCAGACTAcaccagcaaacacacacagaaattcatactgcagGTGGCGATCGCAGGCGCGTTTTATCCGAACTACTTCCTCCAGGGAACTGTGGACGAGGAGCTCGCCTCCAAGGAACTCTCCGGAAATGACCCCAGGACCACTGTACTGgtGCGTAATCTCCCTCCATTTGCATTCCTCTACTATAAACAGCTCCAGTCTCTCTTCAGACAGTGTGGTCAGGTCAAATCCATCTCCTTTGACTACTCCAGggccTATGTAGAGTTCTACCGCTCGTCACTGAGAGGTTCAGGCGTTCTCCCAGaggtctctctgtctctcctcctcgcTCAGCAAAGACTTCCTCTCTATCTCCACGTTTATCCTGCTGAAGAGGTGGAGACTCGGGCAGGGGGGCAGAGTGTCTCACATCTCAGATACgcacgggTGAATGTGGATTTTCAGAATCAGTGTGTGAGCCCTGTCGGAGTTCTGAGCAGCTCCATCGAGCCGGAGAAACTTCCGTCTAACCGTGTCTTCATCGTCAATATCACCGAGgtcatCGAAGTGGGGCATTTTTGGGGTTTCCAGGCTGACGAGGCGAGTCTGGAGAAACAGAGGAGGCTGACGGCGGCCATTAATGCGCGGGAGCTCCGCCCACTTCCTGTGTCACTTTATCCAAACCTTCTGTGTCTCGCCCctttctctgacacacacaccgaacCGGGCAACTACTACAGAGCCAAAATACTGCACGTCATGGGGAGTAATGtggaggtgtTCTTTGTGGACTTCGGAAACACTTCCAAGGTGCCGTGTAACTCTCTGAGGGAACTTCCTGCTGATCTGCAAGCTCTGCCCTTTCAGgctcAGGAGTTCAGCGTGGCGTGTTTGGCTCCATCGGCACAGTCGGTGATTCTGGGCAACCACTGGAGCAGTCGAGCTCGGAACCGCTTCATCACGCTCGTGCACGGCCGCTCGCTCATCGTCACGCTCTACTCCATCCTGTACGGCGTTATGCGCGTCCATCTCCACGTCTCCATGGAAACGGGGGACGTCAGCGCGGCAGACTTGCTCGTGCAAGAAGGCCACGCTCGACCCGCACCCGAGAGCTTCGAAAGCAAGcaGTCCCATGAGGTTCTGATGGCTCTGTATCAGGACCTGAAGGAGGGAACGTTCACTCCAAGCTCCACCAGTAGCTCCTGGAAAAACCGTAAAGAGGAAGAGAAGCGGCTCATCGACAGTCTGCTGCTGTCCTTCTCTAAATCCAGCCACAGCGCCCCCAAGTGCAAGGTTCCAGTTCACGGCCCTTCCTCTCCTCACAAGGTCACATTCCACAGCATGAACGGCGCCCCACActtcagAAACAGCATTAACTCTGTGCTGGTGAACGATCATCCACACGACCATCACGACAGGATGCTGGTGGCcgggtctgtctctctcagtgcctcaggtgtgagTATTTTGCTAAAAGAGACGACCCTGATGCCTCAGATCCATGGCCTTCCTGCCATCATCACCATGCTCTTCACCCCCATCATGGAGCTACGCACTGATGAGGAGCGGACCTGCTTCACTGGAGCTCTGTGTGGTTTGGGCTCCAACTCCGACTCCCATGAGGCCGTTCTGCCGGAGCACGACATTGAGATGGCCTTCGATGTGAAGTTTGATGTTGATGACATTGCAGAGatAAACGCACTGAGAGAAGCGATGAACCGGTTGGTGTGTGAGGGTCCGAACGGTCTCCTCCATCTCGGCCCGGAGAGAATCAGCTCGCTGCAGGACGATGCTCGAGATCGACTCCTCAGgctgtTCTGTAAAGCTCCCCCCAGAGAGGACCGCACACCTGTTTACTACGACAAACCCAAAAAATGGAACCAGgtcgACCCCTCCCAGCAGATGGAGGTTGTGCAGAAGGGTGACAGCAGAATTAAAGGTGTTTTGTTTCAGCTGCACCCTATAACTCTGCTGAACATGTGAGAGTtttgtgttataataatgtttgtttCCTGATTTTACTGCAGAATAACTGACTAGCAGTGACtagatttatataattttctCTGATTATGTTGGACTGCAGTTGTTGCTCCTGTCCACTAGGTGGCACTAGTGTTTATGTTGGTCAATAAATAATGGAGTTTGTTACGCA

Function

symbol description
tdrd9 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in several processes, including gamete generation; negative regulation of transposition; and piRNA metabolic process. Predicted to act upstream of or within cell differentiation; gene silencing by RNA; and meiotic cell cycle. Predicted to be located in nucleus and piP-body. Human ortholog(s) of this gene implicated in spermatogenic failure 30. Orthologous to human TDRD9 (tudor domain containing 9).

NR:

description
putative ATP-dependent RNA helicase TDRD9 isoform X1

GO:

id name namespace
GO:0009566 fertilization biological_process
GO:0030154 cell differentiation biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007283 spermatogenesis biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0071547 piP-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18408 TDRD9; ATP-dependent RNA helicase TDRD9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302071.1 True 4361 mRNA 0.54 35 33468023 33484082
XM_034302075.1 False 4343 mRNA 0.54 35 33468023 33484082

Neighbor

gene id symbol gene type direction distance location
six4a NA coding downstream 64299 33389493 ~ 33403724 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding downstream 80204 33385114 ~ 33387819 (-)
dhrs7 dhrs7 coding downstream 106158 33357030 ~ 33361865 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding downstream 131228 33329005 ~ 33336795 (-)
hif1aa hif1a coding downstream 146360 33306312 ~ 33321663 (-)
kif15 kif15 coding upstream 931 33485013 ~ 33505325 (-)
tacc3 tacc3,LOC108440911 coding upstream 23012 33507094 ~ 33516686 (-)
LOC113541868 NA coding upstream 103811 33587893 ~ 33592807 (-)
si:dkey-157l19.2 LOC108262993 coding upstream 126375 33610457 ~ 33644218 (-)
lgmn lgmn,LOC100304954 coding upstream 161676 33645758 ~ 33656870 (-)
G57220 NA non-coding downstream 716 33465699 ~ 33467307 (-)
G57317 NA non-coding downstream 45549 33421824 ~ 33422474 (-)
G57223 NA non-coding downstream 56570 33410548 ~ 33411453 (-)
G57302 ppm1a,LOC106571506 non-coding downstream 57252 33365057 ~ 33410771 (-)
G57232 NA non-coding downstream 61897 33370775 ~ 33406126 (-)
G57335 NA non-coding upstream 51396 33535478 ~ 33535975 (-)
G57354 NA non-coding upstream 87328 33571410 ~ 33572419 (-)
G57356 NA non-coding upstream 91204 33575286 ~ 33576847 (-)
G57368 NA non-coding upstream 172912 33656994 ~ 33660021 (-)
G57379 NA non-coding upstream 217138 33701220 ~ 33762528 (-)
G57322 NA other downstream 5681 33455222 ~ 33462342 (-)
lrrc9 LOC108262921 other downstream 25208 33423664 ~ 33442815 (-)
slc38a6 slc38a6 other downstream 123187 33337403 ~ 33344836 (-)
G57210 NA other downstream 368451 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 739282 32715827 ~ 32728741 (-)
trnag-gcc_5 NA other upstream 45845 33529927 ~ 33529997 (-)
LOC113542143 LOC108263078 other upstream 78696 33562778 ~ 33570236 (-)

Expression


Co-expression Network