ccdc85a (ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962)


Basic Information

Item Value
gene id ccdc85a
gene name ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14181891 ~ 14192243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302135.1
gagagagagagagactgggctTGTGCACCGGTTTGTGTGATGCTGATGCTTGGATGTGTGATGCTGTAGTGGTCAGTATCGGTCCTCCATGGCGGGTTTAGCTCTCATACTCACTGCTGAGATGGAGACATGACCGGAGAAACAAGAGGAAAGCACCACGATCTCTTCCTTAGAGAAGGGCTTTAGCCAGCTTGAGGAGGAGCAGACGGAGGACGAGTTCTTCCCGGCACTCTCAGGTTGCAGCTGCAGGTTTAAACGGAGCGCGTGCACAGCGCTGCTAGTCTCACTATGAGAGTCTCCTGATTCGGATCCAAGCAAATTTCTGCAGAGCGTCTGCGCCGGGCGGCTTGCGTCTTGTATCCACAGTTCGGCGGTAGCGGGGCGCTTTCTGTGCGCCACTGAGTTGGTGAAGGTGATGGAGAAGCCGGCACAAGCCCAGCTGCAGTCAGGTGCAGCCAAGAGCACGGAGAGCTGCACCGAGGATTTGTCCAAAGTCACGGATCAGGAGCTCATGAAGTGGAGTAAAGACGAGCTGGTGCGGCGGCTGCGCAGAGCCGAGGCCGAAAAGATGAGCGCCATAGTGGAGCACGGAAACCTGATCCGAGAGGTGAACCGCAGGCTCCAGCAGCACCTGAACGAGATCCGGGGACTGAAGGAGGTGAATCAGAAACTGCAAGAGGATAACCAGGAGTTGCGTGACCTTTGCTGCTTCTTGGACGATGATCGGCAGAAGGGGAAGAAAGTGTCAAGGGAGTGGCAGCGCCTCGGCCGCTACAGTGCAGGCATTATGCGTAAGGAGGTGACCCTGTACCTGCAGAAActgaaggagctggagcagAGGCAGGAGGAGGTGCTGAAAGAAAACCTAGAGCTGAGGGAGCTGTGTCTCATGCTGGATGAGGAAAAAGGCTCTGGAGGCACAGGAGGCTTGCTGAGCACTGGAGGTCCAGCAGGCTGTAGGAACTCTATCGACAGCCAGAGCAGCCTGTCACATGCCAGTGTGCCCGGGCCAGGGCTGCTGAGGGACGTTGGGGATGGGAGTAGTACTTCCAGTGCAGGCAGCACTGACAGTCCTGATCATCTGACACACAAGCAGCAGCTGCTGGCTGGTCCAGCTGGAGGCAGTCTTGAGCATGTCCACAAACCCCGGGCAGGGGAGGAGATGCCAGTTCCAGAGCAACTCAACCGCAGAAGGAGCACAAGTCCAGAGTATGCTGCCCACACCTTTCCTCAAGTGTGCCGGCCTCGCTGCGGGTCCTTCTCTAGCCCCGATCACAAGGGCTTGCGAGGTCTCAGCCCCGAAAAGCTTGGCAAAAGAGGCAGTCCAGAGCAGTTTCCAAAGCACTTGCCAGTGTCTTCTCAGCCTCCTGGTAGCCCTGACCTCTTTCAGAAGCACAGGACAAGCATCGGAAGCCTTTGTGGCAGTCCAGAGCCTAAGCAGATAATGTCAGGGACTCCCGAACATCTGCAGAAGGGTCGTGTGATTGCAGGAAGCCCTGAGATGCTAAGGCACCAGTACAGTGGCAGTCCAGATCATGGCAAGTTTGGCAGCCCTGGGCGGGATGTGGCACAAAGGAGGTCAGGAGCAGAAGAGCTGTCCCCACATCACCGGAGCATCTACAGTGGTATGAATGCTCTGCTATCTGCTGGCTGCTGCACCACCTCCTGTAGAAGTGTCAAGCTTTGGGACAGGTAAGACTCAGTCATAAATCTGATAAATGAT
>XR_004577668.1
gagagagagagagactgggctTGTGCACCGGTTTGTGTGATGCTGATGCTTGGATGTGTGATGCTGTAGTGGTCAGTATCGGTCCTCCATGGCGGGTTTAGCTCTCATACTCACTGCTGAGATGGAGACATGACCGGAGAAACAAGAGGAAAGCACCACGATCTCTTCCTTAGAGAAGGGCTTTAGCCAGCTTGAGGAGGAGCAGACGGAGGACGAGTTCTTCCCGGCACTCTCAGGTTGCAGCTGCAGGTTTAAACGGAGCGCGTGCACAGCGCTGCTAGTCTCACTATGAGAGTCTCCTGATTCGGATCCAAGCAAATTTCTGCAGAGCGTCTGCGCCGGGCGGCTTGCGTCTTGTATCCACAGTTCGGCGGTAGCGGGGCGCTTTCTGTGCGCCACTGAGTTGGTGAAGGTGATGGAGAAGCCGGCACAAGCCCAGCTGCAGTCAGGTGCAGCCAAGAGCACGGAGAGCTGCACCGAGGATTTGTCCAAAGTCACGGATCAGGAGCTCATGAAGTGGAGTAAAGACGAGCTGGTGCGGCGGCTGCGCAGAGCCGAGGCCGAAAAGATGAGCGCCATAGTGGAGCACGGAAACCTGATCCGAGAGGTGAACCGCAGGCTCCAGCAGCACCTGAACGAGATCCGGGGACTGAAGGAGGTGAATCAGAAACTGCAAGAGGATAACCAGGAGTTGCGTGACCTTTGCTGCTTCTTGGACGATGATCGGCAGAAGGGGAAGAAAGTGTCAAGGGAGTGGCAGCGCCTCGGCCGCTACAGTGCAGGCATTATGCGTAAGGAGGTGACCCTGTACCTGCAGAAActgaaggagctggagcagAGGCAGGAGGAGGTGCTGAAAGAAAACCTAGAGCTGAGGGAGCTGTGTCTCATGCTGGATGAGGAAAAAGGCTCTGGAGGCACAGGAGGCTTGCTGAGCACTGGAGGTCCAGCAGGCTGTAGGAACTCTATCGACAGCCAGAGCAGCCTGTCACATGCCAGTGTGCCCGGGCCAGGGCTGCTGAGGGACGTTGGGGATGGGAGTAGTACTTCCAGTGCAGGCAGCACTGACAGTCCTGATCATCTGACACACAAGCAGCAGCTGCTGGCTGGTCCAGCTGGAGGCAGTCTTGAGCATGTCCACAAACCCCGGGCAGGGGAGGAGATGCCAGTTCCAGAGCAACTCAACCGCAGAAGGAGCACAAGTCCAGAGTATGCTGCCCACACCTTTCCTCAAGTGTGCCGGCCTCGCTGCGGGTCCTTCTCTAGCCCCGATCACAAGGGCTTGCGAGGTCTCAGCCCCGAAAAGCTTGGCAAAAGAGGCAGTCCAGAGCAGTTTCCAAAGCACTTGCCAGTGTCTTCTCAGCCTCCTGGTAGCCCTGACCTCTTTCAGAAGCACAGGACAAGCATCGGAAGCCTTTGTGGCAGTCCAGAGCCTAAGCAGATAATGTCAGGGACTCCCGAACATCTGCAGAAGGGTCGTGTGATTGCAGGAAGCCCTGAGATGCTAAGGCACCAGTACAGTGGCAGTCCAGATCATGGCAAGTTTGGCAGCCCTGGGCGGGATGTGGCACAAAGGAGGTCAGGAGCAGAAGAGCTGTCCCCACATCACCGGAGCATCTACAGTGGTATGAATGGTGGGTCTGACTGGAGCCTGCTGTAGCACCCACACATGGAGGCCCGTTTCAGTACACTACATGGTCACCATGGAGGGAATCAGTTTCAAAATATAATGCCCTATAGCCAGGCGCTATGTCATCTTATACATTATGCAATGGTCTGCATTTAGTTTTTGCATTTAGGTTTTGCTCACTCAGCTCACACGGGGGCCTTGAGGAGGTAGAGCAGGGCTGGTAAAGGCCGGTGGTGTCCAGTCATGGTTCTCAAGGGCCATGATTTGAACAGGCTTTAGCTGCTACCTGTGCTATTATTTCTTGGAAGCCTTTTATGCACTGGAGCTCAACAGAGGGAACTGTAAGCAATTACACACCATAAAGTACAGAGGCACAACAAAAACCTGAGGACAATACAACCCAGCAGGACCAGGAGTGGACACCACTGTTTTTGCCATATGTTTCCAGCTCTGCTATCTGCTGGCTGCTGCACCACCTCCTGTAGAAGTGTCAAGCTTTGGGACAGCTTTGATGCCTCCTGAC

Function

symbol description
ccdc85a Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302135.1 False 1723 mRNA 0.56 3 14182019 14192243
XR_004577668.1 True 2153 misc_RNA 0.55 4 14181891 14192243

Neighbor

gene id symbol gene type direction distance location
vrk2 vrk2 coding downstream 112913 14056142 ~ 14068978 (-)
LOC117596880 NA coding downstream 148174 13852493 ~ 14033717 (-)
papolg papolg coding downstream 610081 13556873 ~ 13571810 (-)
rel rel coding downstream 627342 13545526 ~ 13554549 (-)
pdlim1 pdlim1,LOC107726967,LOC107655446,LOC107601889,LOC107666525 coding downstream 645024 13531660 ~ 13536867 (-)
ddx43 ddx43,LOC107693529,LOC107588708 coding upstream 175944 14368187 ~ 14387373 (-)
kcnq5a kcnq5,LOC107718835 coding upstream 196744 14388987 ~ 14514886 (-)
LOC113537600 rims1 coding upstream 328695 14520938 ~ 14595086 (-)
ogfrl1 ogfrl1 coding upstream 438652 14630895 ~ 14642737 (-)
smap1 smap1 coding upstream 480838 14673081 ~ 14778488 (-)
LOC113543535 NA non-coding downstream 540367 13632755 ~ 13641524 (-)
G45755 NA non-coding downstream 717152 13464496 ~ 13464739 (-)
G45622 NA non-coding downstream 868735 13312950 ~ 13313156 (-)
G45616 NA non-coding downstream 871651 13308094 ~ 13310240 (-)
G45586 NA non-coding downstream 931514 13248942 ~ 13250377 (-)
G46304 LOC108263835 non-coding upstream 97313 14289556 ~ 14291633 (-)
G46590 NA non-coding upstream 421298 14613541 ~ 14613818 (-)
G46591 NA non-coding upstream 422273 14614516 ~ 14614764 (-)
G46576 NA non-coding upstream 425410 14617653 ~ 14625970 (-)
G46680 NA non-coding upstream 744853 14937096 ~ 14937309 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 746405 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 1150695 13005486 ~ 13031196 (-)
trnak-cuu_1 NA other downstream 1542289 12639530 ~ 12639602 (-)
trnae-cuc_8 NA other downstream 1542568 12639252 ~ 12639323 (-)
LOC113539135 NA other downstream 1548473 12631213 ~ 12633418 (-)
sdhaf4 sdhaf4 other upstream 587613 14779856 ~ 14784753 (-)
c3h10orf53 NA other upstream 1220670 15412913 ~ 15416483 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 2252453 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 2786888 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 3278944 17471187 ~ 17476092 (-)

Expression


Co-expression Network