cxxc4 (cxxc4)


Basic Information

Item Value
gene id cxxc4
gene name cxxc4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 838511 ~ 871353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302560.1
tttaaattttttaaatctaatctgTGTCTCAGAGCGGGAGGATGGCGCTTCTGTCCTGAGCTCTTCTccttcatctgtccatcatgAGCCGCTAACAGGAGACCggacttctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacggatccCGGTAGTGCGCAGTGGAATAATCGCAGTGGAATAATCGCAGGATGCTAACGCATTAGTCTCGGAGGAGTTTTGGCGTTGAAGAAGGACGGACCCCATCGCCGCTTGACGTCTCTGCTACAGCGCTGATCACAGCGAGCGGCCATGTCGAACATAAACAGTGCGCTCTGCATCGAGAGCGGCGCTAACGCAGACGTGTCTCTGTTACAAAAGGACGCCCTTCAGGAAGCCGGATTAAACCAGCTGTTGGATTACAACGCAGAAATCGAACGTTACCGCTCTTTCGCAAACTTTTACAAAACCAATGGCGCGTTTCCTCAGAGTGCCAAGATCGCCCGCATCACCACGCCCATCTTTCCCAGCGCGCGGATTGGTGTTTCGCCGTGGAACTGTGACAACGCCGTGCTCTGGGGGCGCAAGTCGGCGCCGATCCACCCGAACAGAACCAGGAGCGAGTCGTCTCAGCGGCCCGGGAAACCCGAGACTCTGCAGATGGCGAACGGTAACTTCCTGTCCACGTTATCGCCGGAGCACTGCAGGCCGTTAGCGGGGGACTGTGTTAACAAGCTGAAGTGCGGCGGCGCTGCTGAAGCGGAGATAATGAACCCGGCGTTCTCCGCCCTCCCTGCTCTGGGGGGAATCTCTTTACCCCCCGGGGTCATCGTCATGACGGCACTGCACTCTCCCGCCTCCGCATCCGCCGTCACAGACAGCGCGTTTCAGATCGCCAACCTGGCAGACTGCCAgcagcataataataatcacagtaATCACATTTCCTCTCCTGCGTCCGGAGGAAACGCCGCCAAGAAAAAGAGGAAGCGCTGCGGCGTGTGCGCCCCCTGCAGGCGGCTCATTAACTGCGGCGTGTGTAGCAGCTGCCGAAACCGCAAGACCGGACACCAGATCTGCAAATTCCGCAAATGCGAGGAACTGAAGAAGAAACCGGGATCATCACTCGAGAGGACGCCGGTGAGCAGCGGAGAGGCGTTTCGATGGTTCTTCTAGTCCCAAAGAAACACACCGTCATGCCACATTATTCAATAACTGACtcaaaaaaatggatttaaaggCTCCAGAACCTGGAAGTGAAACCAAACCTCGCTGGAGGAACGACAGAAACCACAGAAacgagacagacggagagagagagagagagagagagagagagagaggtggacgAGAGAAGGGTTAACGctgtaatttgtttatttcttgtgtAATTATCACCATTTTCTGTGTCTCTGCGTGTTCGGTGTCGTGGCTGATCGAGCTACAGACGCTAACTTATAGACAATCAGCACCCGGAATAAACCATTCAAACGGAATATACCATTCACCTGGAATATACCATTCTCACGGAGGACGGCGTGATCACGCTGAATGTCTCGCAGCTGTGAGTCGAGGTGACTGAAGGACAAGCGACAACAGGAGGACATCTATGAAGCTGGAATAAACCATTCCTGAGGAGACGGGGGGATCAGAtacaatctgtctgtctgttcatctgtctgtctctccttctatCTGTCTGCTCTGCCTCTTTATGTATGTAGCTAGAACAATCCATTCcaggagagaaggaaaggagctgatgctctctctctctctctctctctcacctctctctcactttctctctttgaGACCAAACCATTTCTCAACAGAGGGGAGGATCGGATATTTTACGGATATTCTATCTATCCATCATTCCATTTacttatctgtctctctgtccatctctctgtgtgcaCATCcctcctccatccctccatccatccctccatccatccatccctccatgaTTGGAACAAACCATTTCTGATCAGAGGTGGAGGATGATCATTTATGATCTACTTACAGTGTCCCACGATTGTCATGTGACCTTATCGaatgagtgtaatgatgtcATCGATGTGATGATGACATCACGCACAGATTGGAACAGTCGCCTCGACAAACCGCTGCCGAACGATACGGACGGAGGAAATGCGATCGTACGCCAGACCTGCAGCAATAATCGGGAAATTCTTCAGAGTTTCAGTTGATTTATGCGCCGGGACGAGAGACGCAGCCAATCACGGTTctgtacttttcctttaatttgccGCTGTTCGGACGTTACGCAGGGCATATTGTCTTGCTAACAACGtgttgtaatttttaatttgtgatGTGAAACGTCTTGATTTATGGAAAAACACTGGATCCTCGATTGTTTCGGATGAAATGTTTTCATAACGTTTCAATTTCTgttacagaaacacagaaaggctgtgcatttattattcatttctcTGTCCAGAGATCTTTGCTACGAAATCTTAGTTACGAAGTTAGTTAGCAGCTAAAGTTGCATCCATTCTGGGCTGAAGTCTCTCACATGGGCTactgaaatcaaataaaaataaaattaataatcttTCATAATTATGATCGGAGCATCTTAGCTgaactaactaaataactagCTAAGTTATAGCTCGATAACACAAGGTATtgaatatagctagctagctagtgttacaCTGGAGTAGCTAAACATGGGTAACTAATCACCTAGCTAGCTtgcaaatactgtataataaataaaaacaactggaCAGAAAACTTTATAATAACAACGCACAGCCTGTCTGGACTTCTGTAGGTTGGACGcacaagtaaataaattaaggtTAAATTTCCAAACTGCTAAATTTAGCAAAGATCTCCTAGCTATGTGCACCAGATGAACTGAAgcgagaaaaagaaaattaaaattcctctcagaaattcTTCCAGATAATCTCAttatagctagctggctaatgttagcaCTTATTATTATGACCATTTATCATGATGAATTAAAatttcctctcagaaatcctgtcggATTACTCCATGtttgctagctggctaaagtTAGCGGTAAAaatgatgaatattaatgagtgatttaaaatgttaagaCTTTGCTGTAACTGACCTTCAGTTCGTCTGGTGTAACAGATCAGATCTGTGTAATGTGAAGCCCAGAAACTGAAATTATGGTGTTAAACACGTGAGCGATGTTACTCACTAGCGCTGATGCTAGCGCTAACGCCCTGCTGTtgcatgtgtatctgtgttttggGTTTAAAGATTACTGAGAGTTTGTATATCGTCGTTGTGATGCTTTTATGTGttcaaatgaaaggaaaaaaaagaccaa
>XM_034302561.1
ACATCCAAATCGGTTCGTCGCAGTTTTTACGATATTGTCGAAGTAACCCCGTTACCATGGGAACGACAATTCGGCTGCATCGCGTTCACAATTTTCAGTTACACACGCAAATGAAAACACTTACAAGAGTCAAGTGTCAGCGAtgagcgaaaaaaaaaacattcgtaTGACGAAAACTCTAAACAACGTTGTTTTGCGAAATCAACCAACTTCACTTTCTgcgttttttcttcttttctttaaaattcgGTCGTAATCACATGATCTCCAGCTACATGCCACTGCTGACagtaagaaacaaaataaacacaacaaaaataacttCGTCCATCAAATACAGTAAAGAAGTTTCTGAAAAATGCTCGTCAGTATCTTTTGTTGTCACGTTTTAGCTTGTGTTTGGAGTAAGCGTGCGCCATTTTCACATATTTGAAGTGCGCAGTGGAATAATCGCAGTGGAATAATCGCAGGATGCTAACGCATTAGTCTCGGAGGAGTTTTGGCGTTGAAGAAGGACGGACCCCATCGCCGCTTGACGTCTCTGCTACAGCGCTGATCACAGCGAGCGGCCATGTCGAACATAAACAGTGCGCTCTGCATCGAGAGCGGCGCTAACGCAGACGTGTCTCTGTTACAAAAGGACGCCCTTCAGGAAGCCGGATTAAACCAGCTGTTGGATTACAACGCAGAAATCGAACGTTACCGCTCTTTCGCAAACTTTTACAAAACCAATGGCGCGTTTCCTCAGAGTGCCAAGATCGCCCGCATCACCACGCCCATCTTTCCCAGCGCGCGGATTGGTGTTTCGCCGTGGAACTGTGACAACGCCGTGCTCTGGGGGCGCAAGTCGGCGCCGATCCACCCGAACAGAACCAGGAGCGAGTCGTCTCAGCGGCCCGGGAAACCCGAGACTCTGCAGATGGCGAACGGTAACTTCCTGTCCACGTTATCGCCGGAGCACTGCAGGCCGTTAGCGGGGGACTGTGTTAACAAGCTGAAGTGCGGCGGCGCTGCTGAAGCGGAGATAATGAACCCGGCGTTCTCCGCCCTCCCTGCTCTGGGGGGAATCTCTTTACCCCCCGGGGTCATCGTCATGACGGCACTGCACTCTCCCGCCTCCGCATCCGCCGTCACAGACAGCGCGTTTCAGATCGCCAACCTGGCAGACTGCCAgcagcataataataatcacagtaATCACATTTCCTCTCCTGCGTCCGGAGGAAACGCCGCCAAGAAAAAGAGGAAGCGCTGCGGCGTGTGCGCCCCCTGCAGGCGGCTCATTAACTGCGGCGTGTGTAGCAGCTGCCGAAACCGCAAGACCGGACACCAGATCTGCAAATTCCGCAAATGCGAGGAACTGAAGAAGAAACCGGGATCATCACTCGAGAGGACGCCGGTGAGCAGCGGAGAGGCGTTTCGATGGTTCTTCTAGTCCCAAAGAAACACACCGTCATGCCACATTATTCAATAACTGACtcaaaaaaatggatttaaaggCTCCAGAACCTGGAAGTGAAACCAAACCTCGCTGGAGGAACGACAGAAACCACAGAAacgagacagacggagagagagagagagagagagagagagagagaggtggacgAGAGAAGGGTTAACGctgtaatttgtttatttcttgtgtAATTATCACCATTTTCTGTGTCTCTGCGTGTTCGGTGTCGTGGCTGATCGAGCTACAGACGCTAACTTATAGACAATCAGCACCCGGAATAAACCATTCAAACGGAATATACCATTCACCTGGAATATACCATTCTCACGGAGGACGGCGTGATCACGCTGAATGTCTCGCAGCTGTGAGTCGAGGTGACTGAAGGACAAGCGACAACAGGAGGACATCTATGAAGCTGGAATAAACCATTCCTGAGGAGACGGGGGGATCAGAtacaatctgtctgtctgttcatctgtctgtctctccttctatCTGTCTGCTCTGCCTCTTTATGTATGTAGCTAGAACAATCCATTCcaggagagaaggaaaggagctgatgctctctctctctctctctctctcacctctctctcactttctctctttgaGACCAAACCATTTCTCAACAGAGGGGAGGATCGGATATTTTACGGATATTCTATCTATCCATCATTCCATTTacttatctgtctctctgtccatctctctgtgtgcaCATCcctcctccatccctccatccatccctccatccatccatccctccatgaTTGGAACAAACCATTTCTGATCAGAGGTGGAGGATGATCATTTATGATCTACTTACAGTGTCCCACGATTGTCATGTGACCTTATCGaatgagtgtaatgatgtcATCGATGTGATGATGACATCACGCACAGATTGGAACAGTCGCCTCGACAAACCGCTGCCGAACGATACGGACGGAGGAAATGCGATCGTACGCCAGACCTGCAGCAATAATCGGGAAATTCTTCAGAGTTTCAGTTGATTTATGCGCCGGGACGAGAGACGCAGCCAATCACGGTTctgtacttttcctttaatttgccGCTGTTCGGACGTTACGCAGGGCATATTGTCTTGCTAACAACGtgttgtaatttttaatttgtgatGTGAAACGTCTTGATTTATGGAAAAACACTGGATCCTCGATTGTTTCGGATGAAATGTTTTCATAACGTTTCAATTTCTgttacagaaacacagaaaggctgtgcatttattattcatttctcTGTCCAGAGATCTTTGCTACGAAATCTTAGTTACGAAGTTAGTTAGCAGCTAAAGTTGCATCCATTCTGGGCTGAAGTCTCTCACATGGGCTactgaaatcaaataaaaataaaattaataatcttTCATAATTATGATCGGAGCATCTTAGCTgaactaactaaataactagCTAAGTTATAGCTCGATAACACAAGGTATtgaatatagctagctagctagtgttacaCTGGAGTAGCTAAACATGGGTAACTAATCACCTAGCTAGCTtgcaaatactgtataataaataaaaacaactggaCAGAAAACTTTATAATAACAACGCACAGCCTGTCTGGACTTCTGTAGGTTGGACGcacaagtaaataaattaaggtTAAATTTCCAAACTGCTAAATTTAGCAAAGATCTCCTAGCTATGTGCACCAGATGAACTGAAgcgagaaaaagaaaattaaaattcctctcagaaattcTTCCAGATAATCTCAttatagctagctggctaatgttagcaCTTATTATTATGACCATTTATCATGATGAATTAAAatttcctctcagaaatcctgtcggATTACTCCATGtttgctagctggctaaagtTAGCGGTAAAaatgatgaatattaatgagtgatttaaaatgttaagaCTTTGCTGTAACTGACCTTCAGTTCGTCTGGTGTAACAGATCAGATCTGTGTAATGTGAAGCCCAGAAACTGAAATTATGGTGTTAAACACGTGAGCGATGTTACTCACTAGCGCTGATGCTAGCGCTAACGCCCTGCTGTtgcatgtgtatctgtgttttggGTTTAAAGATTACTGAGAGTTTGTATATCGTCGTTGTGATGCTTTTATGTGttcaaatgaaaggaaaaaaaagaccaa

Function

symbol description
cxxc4 Predicted to enable methyl-CpG binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CXXC4 (CXXC finger protein 4).

NR:

description
CXXC-type zinc finger protein 4

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03344 IDAX; Dvl-binding protein IDAX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302560.1 False 3379 mRNA 0.46 3 838511 871353
XM_034302561.1 True 3623 mRNA 0.45 3 838511 868038

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding downstream 82704 746338 ~ 755807 (-)
ppa2 ppa2,LOC108414713 coding upstream 54598 925951 ~ 937449 (-)
ints12 ints12 coding upstream 194034 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 274776 1146129 ~ 1153350 (-)
snapc3 snapc3 coding upstream 938797 1810150 ~ 1820845 (-)
si:ch211-113e8.11 LOC108263804 coding upstream 1022233 1893586 ~ 1895099 (-)
G38494 LOC108263789 non-coding downstream 93513 722152 ~ 744998 (-)
G38496 NA non-coding downstream 109695 723474 ~ 728816 (-)
G38480 NA non-coding downstream 129406 708051 ~ 709105 (-)
G38476 NA non-coding downstream 132175 705979 ~ 706336 (-)
G38467 NA non-coding downstream 141508 691147 ~ 697003 (-)
G39303 NA non-coding upstream 30595 901948 ~ 907408 (-)
G39304 NA non-coding upstream 30767 902120 ~ 905871 (-)
G39306 NA non-coding upstream 32645 903998 ~ 907834 (-)
G39312 tet2,LOC108414712 non-coding upstream 49774 921127 ~ 925526 (-)
G39313 NA non-coding upstream 82546 953899 ~ 954107 (-)
G38400 NA other downstream 522983 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 570696 221729 ~ 267815 (-)
LOC113524614 NA other upstream 133124 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 399092 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1000580 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1098410 1969763 ~ 1979549 (-)
G39720 NA other upstream 1302005 2173358 ~ 2173751 (-)

Expression


Co-expression Network