foxe1 (foxe1)


Basic Information

Item Value
gene id foxe1
gene name foxe1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1249073 ~ 1257956 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034302578.1
gatgggttcctctccaggttccttcctcatatcatctcagggagtcaCTCTGCCACCTCTGGCTTTTACAATCTATATCCTGAAtCATTTCAGATCATCAAACACGTGTGTGTTTAAAGCTGATAAGAATTGTCCGTTTGTATGGAGATATAATGGTCTGGAACTGCGCGTCACCTGATGGGGTGGATGGtggagggggcgtggccaagCGCTGCTCAGGTGTTTTAGTGTGCAGGTAAGCTCAGGTTTGTCACTCACTACAGCTCGCTCACTCGCCTCTCAAACACTAAGCCTCACAAAAATGTTGTTTACATTAGCGCTGAGGTCGGACGGAACCTGGATCTGACAGACGAACGCAAACTTTgccggcttttttttttttaaacagagattAACACAAGGGGAATTTCTCTGCAGTAAGTTTGTCAGCATGGCGGTGATTTGCTTATCACTTATTAAATTATTCGCTGCTTGTGGATGCCACTTCTGATCTGCAAAGGAGTGAAACTGAACATTTGCCAAGCAAAACTGCCACATTAGATGCCAGCAGACACACCTTGACGTGAGTCAGAAGGCTGCAGAGACAttcagagagagaacaagatgCCTGTGGTTAAGGCGGAGGACGAGGCTCCGGCGCAGACGGCCGTGGAGACGCTGGACTCTCAGAATGCCGATGCCCCTAAAGGCCGACGCAGGAAAAGGCCTCTGCAGAGGGGAAAACCTCCCTACAGCTACATCGCTCTCATCTCCATGGCCATCGCCAGCTCCCCTGATCGCAAGCTCACTCTCGGGGGCATCTACAAGTTCATCACGGACCGCTTCCCTTTTTATCGGGACAATTCCAAAAAATGGCAGAACTCTATCCGGCACAATCTGACGCTCAACGACTGCTTCGTCAAAATCCCCCGAGAACCGGGGAGGCCTGGGAAGGGCAACTACTGGGCGCTGGACCCCAATGCAGAGGACATGTTCGAGAGCGGAAGCTTCCTGCGACGCCGCAAACGCTTTAAACGCTGCGATTTCGCCACCTACGCTACCTCCTCGTCATCGTACCATCACGACTCGCCCATTTTCTCTCCCGTCCAGATCGCCTCCTCCGTCTACGGCTCGGTGTACCCAACGTACGCGCCGCAGATCTCCCCCCCGTACTATCCGCCCTCCACCACCGGGTTCGGCTCGACCCAGTCTCGCGTGTTCAGCATCAACACCATAATCGGGTCTGGCGGTTTGGCGCACAGCCCACCGGAGACGCCGCCGGCGCAGCCGCCGTGCCGCAACTTCAACCAAGACGGAGCAGGATCGTGCTCACTGAACTCCAACCACATCACCTTCTCGTACCCCAACGCCGGGAATCATGGGTACGGCCAGGCCGCTCAGGGCATGTTCACGCACAACAGCACGCAGAACTACATCCCCTCTGGGCGACTAGGGGTCACGGGGTCATCCCCCATCACCGCGGATGTAGCGAACGATCCATACATCCATAACGGCAGTGGAACAGGCGGCTACATGAGACCTGTAACGTATCCGTCCTGCATGGACAGGTTTGTTTCTGCCATTTAAAAAACTGTGAAGGtgctaaaaacaaacatgaataaaaaactgCTGCCTGTGACCAGACTGCACGCGGTTACAAAGCTATTTAAAGACTCTTACGCTCGAATGTTTTAAAATCATCTGTTCCTGAGTCTCGGAAATGAATTCTATTTGCTgcacatgtggaaaaaatggcAGTATCTCAGgtcacctttttattttttcttccctctctctctccctgtctcgcGTCTGAAGAGGAACGGCGTTTGAACAGACAGAATTCACCTCACGGACTCGGAAAAGACCGAACTTTTtatcatatttacacacaaaaaaaacgcaCGTTGATTAGGTTAATGAGATATTTACTGTTTTTCCATTATcgtgtgtgaaatgtgttctggtgtgtttctgtaaaaatgattgtgtttatttagGCTTTATGTTAAAGAATTAAATTTCACCATTGGTGTATTATTTCGCGCTCTATTGCATTTCTTTTTGtgcagatattaaaaataaaacacttggtatgctgagaaaagagaaaaacttaATTTGAGGAAAGTTGTTTATTATGTGGtcgctttttttcctttttatttttccttgcaCAATTTCAATTAAATTCTTATTGTTGAAGTTTATTAGACCTGCATTATAACTTTGTGGCTTATTGACTAATTAtctaaaaaatttaattcactTCATAAACCTTAGCTGTAGAACACCGGCAATACCGTAACACATTTTATCTGGA

Function

symbol description
foxe1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and growth plate cartilage chondrocyte proliferation. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; endocrine system; head; notochord; and pharynx. Human ortholog(s) of this gene implicated in Bamforth-Lazarus syndrome and thyroid gland papillary carcinoma. Orthologous to human FOXE1 (forkhead box E1).

NR:

description
PREDICTED: forkhead box protein E1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003419 growth plate cartilage chondrocyte proliferation biological_process
GO:0060021 roof of mouth development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09398 FOXE; forkhead box protein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034302578.1 True 2302 mRNA 0.48 2 1249073 1257956

Neighbor

gene id symbol gene type direction distance location
spag5 spag5 coding upstream 57827 1179478 ~ 1191246 (+)
LOC113524617 NA coding upstream 72229 1171885 ~ 1176844 (+)
hemgn NA coding upstream 83704 1162619 ~ 1165369 (+)
uso1 uso1 coding upstream 154152 1072737 ~ 1094921 (+)
arhgef38 arhgef38 coding upstream 187199 1038675 ~ 1061874 (+)
bnc2 bnc2,LOC107595060 coding downstream 136241 1394197 ~ 1583922 (+)
psip1a psip1,LOC108262878,LOC108439950,LOC106610301 coding downstream 526584 1784540 ~ 1806551 (+)
dnajb14 dnajb14 coding downstream 564300 1822256 ~ 1847413 (+)
LOC117596857 pla2g12a,LOC108263807 coding downstream 590269 1848225 ~ 1853432 (+)
LOC113524724 LOC104953273 coding downstream 598565 1856521 ~ 1860800 (+)
G38596 NA non-coding upstream 89745 1158426 ~ 1159328 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding upstream 95747 1119294 ~ 1153326 (+)
G38593 NA non-coding upstream 112047 1136664 ~ 1137026 (+)
G38585 NA non-coding upstream 179756 1068247 ~ 1069317 (+)
G38582 NA non-coding upstream 199644 1046243 ~ 1049429 (+)
G38623 NA non-coding downstream 12241 1270197 ~ 1271301 (+)
G38607 NA non-coding downstream 36587 1294543 ~ 1390044 (+)
G38637 NA non-coding downstream 76028 1333984 ~ 1335871 (+)
G38676 NA non-coding downstream 204506 1462462 ~ 1464437 (+)
G38681 NA non-coding downstream 220601 1478557 ~ 1479139 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 24472 1194219 ~ 1224601 (+)
trmo trmo other upstream 60479 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 107139 1102778 ~ 1141934 (+)
G38577 NA other upstream 183742 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 504074 722127 ~ 744999 (+)
cdk2ap2 cdk2ap2 other downstream 725691 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 767532 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 2573911 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 3406360 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 4005626 5263582 ~ 5357860 (+)

Expression


Co-expression Network